Wall clock time and date at job start Sat Apr 11 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47024 * 110.99689 * 2 1 4 4 C 1.53093 * 109.25649 * 182.39138 * 3 2 1 5 5 O 1.43019 * 109.26085 * 303.15463 * 4 3 2 6 6 C 1.43009 * 113.74000 * 58.66712 * 5 4 3 7 7 H 1.09003 * 109.50737 * 61.31338 * 6 5 4 8 8 C 1.50703 * 109.50783 * 181.39623 * 6 5 4 9 9 O 1.21279 * 120.00097 * 5.00490 * 8 6 5 10 10 N 1.34771 * 120.00069 * 185.00026 * 8 6 5 11 11 C 1.46501 * 120.00163 * 180.02562 * 10 8 6 12 12 C 1.50701 * 109.47227 * 180.02562 * 11 10 8 13 13 C 1.30993 * 120.00095 * 127.09597 * 12 11 10 14 14 C 1.50705 * 120.00276 * 7.83583 * 13 12 11 15 15 N 1.46899 * 109.47121 * 127.04989 * 14 13 12 16 16 C 1.46900 * 110.99495 * 180.02562 * 15 14 13 17 17 C 1.50705 * 109.46684 * 179.97438 * 16 15 14 18 18 O 1.21286 * 120.00243 * 359.97438 * 17 16 15 19 19 N 1.34783 * 119.99904 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99723 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00320 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99702 * 179.97438 * 20 19 17 23 23 N 1.31418 * 120.00120 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00014 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47267 * 89.99927 * 24 22 20 26 26 H 1.48499 * 109.47305 * 209.99881 * 24 22 20 27 27 H 1.48501 * 109.47158 * 330.00014 * 24 22 20 28 28 C 1.47014 * 111.00242 * 123.63276 * 2 1 3 29 29 H 1.09003 * 109.46868 * 63.95267 * 1 2 3 30 30 H 1.09004 * 109.46827 * 183.95190 * 1 2 3 31 31 H 1.08997 * 109.47169 * 303.95428 * 1 2 3 32 32 H 1.08995 * 109.50372 * 62.46001 * 3 2 1 33 33 H 1.08994 * 109.50676 * 302.32254 * 3 2 1 34 34 H 1.09000 * 109.51320 * 183.21657 * 4 3 2 35 35 H 1.09009 * 109.50898 * 63.08540 * 4 3 2 36 36 H 0.97006 * 120.00055 * 0.02562 * 10 8 6 37 37 H 1.08994 * 109.47226 * 59.99884 * 11 10 8 38 38 H 1.08999 * 109.46767 * 300.00083 * 11 10 8 39 39 H 1.08003 * 119.99996 * 307.36659 * 12 11 10 40 40 H 1.08002 * 120.00604 * 187.84114 * 13 12 11 41 41 H 1.08997 * 109.47025 * 247.05263 * 14 13 12 42 42 H 1.09000 * 109.46789 * 7.04915 * 14 13 12 43 43 H 1.00900 * 110.99941 * 56.05158 * 15 14 13 44 44 H 1.09003 * 109.47591 * 299.99576 * 16 15 14 45 45 H 1.09002 * 109.47159 * 60.00467 * 16 15 14 46 46 H 0.97006 * 119.99590 * 359.97438 * 19 17 16 47 47 H 0.96997 * 119.99756 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.50253 * 57.67583 * 28 2 1 49 49 H 1.09000 * 109.50523 * 297.54662 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5249 1.3266 -0.0603 5 8 4.0175 0.5575 1.0403 6 6 3.5250 -0.7848 1.0709 7 1 3.8392 -1.3085 0.1681 8 6 4.0742 -1.4948 2.2814 9 8 4.7403 -0.8857 3.0915 10 7 3.8252 -2.8067 2.4638 11 6 4.3586 -3.4969 3.6409 12 6 3.9402 -4.9442 3.6071 13 6 4.8405 -5.8891 3.7197 14 6 6.2656 -5.5355 4.0590 15 7 6.7023 -6.3224 5.2201 16 6 8.0900 -6.0028 5.5806 17 6 8.5016 -6.8269 6.7734 18 8 7.7160 -7.6036 7.2741 19 7 9.7423 -6.7002 7.2843 20 6 10.1168 -7.4502 8.3691 21 1 9.4175 -8.1424 8.8144 22 6 11.3961 -7.3199 8.8955 23 7 12.2472 -6.4780 8.3533 24 14 11.9062 -8.3414 10.3739 25 1 12.4963 -9.6228 9.9104 26 1 12.9118 -7.5926 11.1698 27 1 10.7161 -8.6208 11.2170 28 6 1.9959 -0.7602 1.1427 29 1 -0.3633 0.4513 -0.9233 30 1 -0.3633 -1.0253 0.0708 31 1 -0.3633 0.5740 0.8524 32 1 1.6827 1.8826 0.9110 33 1 1.6134 1.9092 -0.8682 34 1 3.9222 2.3400 -0.0029 35 1 3.8385 0.8645 -0.9965 36 1 3.2927 -3.2940 1.8158 37 1 3.9705 -3.0271 4.5445 38 1 5.4468 -3.4334 3.6370 39 1 2.8986 -5.2025 3.4856 40 1 4.5615 -6.9216 3.5695 41 1 6.9078 -5.7581 3.2069 42 1 6.3301 -4.4733 4.2948 43 1 6.5910 -7.3106 5.0496 44 1 8.7453 -6.2284 4.7392 45 1 8.1668 -4.9439 5.8272 46 1 10.3705 -6.0787 6.8841 47 1 13.1401 -6.3868 8.7211 48 1 1.6134 -1.7803 1.1086 49 1 1.6828 -0.2842 2.0720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715800577.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:06 Heat of formation + Delta-G solvation = -107.210334 kcal Electronic energy + Delta-G solvation = -28328.678426 eV Core-core repulsion = 24097.526835 eV Total energy + Delta-G solvation = -4231.151591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.46157 -40.19585 -39.85466 -38.05838 -36.78224 -36.25236 -35.76456 -34.07982 -33.25969 -32.47622 -29.96956 -29.22487 -27.55153 -26.46865 -25.45244 -25.09053 -24.47927 -22.02816 -21.41071 -21.20290 -20.13093 -19.79712 -18.44095 -18.04166 -17.59741 -17.27284 -16.94861 -16.82799 -16.67586 -16.39788 -16.19476 -16.01072 -15.91601 -15.58672 -15.28063 -15.26012 -15.03025 -14.74611 -14.31379 -14.17157 -14.04146 -13.52538 -13.48779 -13.31330 -13.21102 -12.97112 -12.93717 -12.82086 -12.73400 -12.44460 -12.42541 -12.12340 -11.82638 -11.69014 -11.51445 -10.99924 -10.80120 -10.42590 -10.37021 -10.03629 -10.00235 -9.53638 -9.27832 -8.47316 -5.96585 0.99666 1.37939 1.41696 1.42872 1.54938 1.92156 2.03338 2.29362 2.68658 2.99187 3.05805 3.19690 3.59958 3.61382 3.68089 3.76432 3.88035 3.95725 4.05975 4.12827 4.24243 4.27990 4.30638 4.43491 4.45677 4.47241 4.53898 4.54388 4.62245 4.63234 4.67906 4.76605 4.77730 4.89268 4.97363 5.01400 5.27224 5.40048 5.57686 5.77062 5.79663 5.85608 5.87886 5.97872 6.07130 6.39463 6.48156 6.58617 7.11174 7.14087 7.54433 8.09364 8.70076 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025062 B = 0.001458 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.956993 B =19198.788483 C =20009.389742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.543 5.543 3 C 0.014 3.986 4 C 0.057 3.943 5 O -0.393 6.393 6 C 0.082 3.918 7 H 0.115 0.885 8 C 0.515 3.485 9 O -0.572 6.572 10 N -0.701 5.701 11 C 0.140 3.860 12 C -0.161 4.161 13 C -0.124 4.124 14 C 0.070 3.930 15 N -0.678 5.678 16 C 0.063 3.937 17 C 0.437 3.563 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.995 3.005 25 H -0.269 1.269 26 H -0.271 1.271 27 H -0.273 1.273 28 C 0.034 3.966 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.024 0.976 32 H 0.034 0.966 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.420 0.580 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.148 0.852 40 H 0.131 0.869 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.347 0.653 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.118 0.882 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.586 13.150 -24.668 36.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.268 5.268 3 C -0.114 4.114 4 C -0.019 4.019 5 O -0.312 6.312 6 C 0.020 3.980 7 H 0.133 0.867 8 C 0.300 3.700 9 O -0.450 6.450 10 N -0.355 5.355 11 C 0.017 3.983 12 C -0.180 4.180 13 C -0.143 4.143 14 C -0.058 4.058 15 N -0.311 5.311 16 C -0.069 4.069 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.210 5.210 20 C -0.466 4.466 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.819 3.181 25 H -0.194 1.194 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.095 4.095 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.258 0.742 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.166 0.834 40 H 0.149 0.851 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.166 0.834 44 H 0.087 0.913 45 H 0.117 0.883 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.136 0.864 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -23.411 13.412 -23.544 35.809 hybrid contribution 0.714 -0.330 0.454 0.908 sum -22.698 13.083 -23.090 34.921 Atomic orbital electron populations 1.22484 0.85037 1.03257 1.01729 1.62288 1.09757 1.13772 1.41030 1.22902 0.96103 0.89861 1.02546 1.22983 0.92746 0.96970 0.89216 1.88103 1.70240 1.22711 1.50098 1.21988 0.94029 0.85286 0.96668 0.86726 1.20609 0.79962 0.82518 0.86872 1.90744 1.40487 1.67145 1.46644 1.45697 1.54860 1.08527 1.26450 1.20437 0.98969 0.90872 0.88052 1.22741 1.00351 0.91789 1.03138 1.22837 0.93532 1.00470 0.97482 1.21331 0.94775 0.98735 0.90974 1.60084 1.20264 1.11918 1.38808 1.21547 0.90412 1.00033 0.94921 1.20831 0.82287 0.86476 0.87908 1.90482 1.52884 1.42653 1.64861 1.41941 1.12213 1.38306 1.28532 1.19699 0.98315 1.20613 1.07962 0.90203 1.26075 0.95117 0.98341 1.01750 1.69681 1.07162 1.36574 1.42712 0.84898 0.77971 0.77981 0.77297 1.19437 1.19581 1.19778 1.22673 0.92589 1.01607 0.92643 0.89656 0.89806 0.95694 0.94771 0.87041 0.86706 0.90765 0.74197 0.91941 0.91398 0.83430 0.85112 0.93194 0.90103 0.83366 0.91336 0.88298 0.76996 0.91277 0.86366 0.95004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.63 127.69 1.23 1.37 16 2 N -0.54 -5.36 4.99 -921.42 -4.59 -9.95 16 3 C 0.01 0.14 5.66 86.31 0.49 0.63 16 4 C 0.06 0.70 7.01 72.01 0.50 1.20 16 5 O -0.39 -8.30 10.01 -130.02 -1.30 -9.60 16 6 C 0.08 1.29 3.22 29.88 0.10 1.38 16 7 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 8 C 0.51 11.02 7.18 87.66 0.63 11.65 16 9 O -0.57 -18.96 16.51 15.93 0.26 -18.70 16 10 N -0.70 -10.17 5.51 -466.80 -2.57 -12.74 16 11 C 0.14 2.59 5.76 85.63 0.49 3.09 16 12 C -0.16 -2.34 9.63 25.65 0.25 -2.09 16 13 C -0.12 -2.21 9.77 25.66 0.25 -1.96 16 14 C 0.07 1.62 5.77 85.56 0.49 2.11 16 15 N -0.68 -21.66 6.11 -521.96 -3.19 -24.85 16 16 C 0.06 2.25 6.17 85.56 0.53 2.78 16 17 C 0.44 21.40 7.82 87.66 0.69 22.09 16 18 O -0.62 -35.15 15.78 -3.05 -0.05 -35.20 16 19 N -0.57 -30.19 5.29 -306.98 -1.62 -31.81 16 20 C -0.34 -19.50 9.68 84.04 0.81 -18.69 16 21 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.60 13.05 21.67 0.28 -50.31 16 24 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 C 0.03 0.38 4.89 86.31 0.42 0.80 16 29 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.08 0.34 8.08 -2.38 -0.02 0.32 16 31 H 0.02 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.42 2.77 8.35 -92.70 -0.77 1.99 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.52 5.31 -2.39 -0.01 1.51 16 39 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.97 5.31 -2.39 -0.01 1.95 16 43 H 0.35 11.25 8.43 -89.69 -0.76 10.49 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 46 H 0.40 19.89 7.90 -92.70 -0.73 19.15 16 47 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 48 H 0.12 0.67 7.99 -2.39 -0.02 0.65 16 49 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -80.71 406.43 -4.68 -85.39 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: -1.28 Total: 38.07 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 7.35 Total: 24.12 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -11.70 Total: -129.68 kcal Atomic # 8 Polarization: -62.41 SS G_CDS: -1.09 Total: -63.50 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -80.71 -4.68 -85.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715800577.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.820 kcal (2) G-P(sol) polarization free energy of solvation -80.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds