Wall clock time and date at job start Sat Apr 11 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46903 * 110.99893 * 2 1 4 4 C 1.52998 * 109.47282 * 293.96232 * 3 2 1 5 5 N 1.46504 * 109.46779 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00176 * 89.99973 * 5 4 3 7 7 C 1.34771 * 119.99829 * 269.99319 * 5 4 3 8 8 O 1.21280 * 120.00215 * 0.02562 * 7 5 4 9 9 C 1.50710 * 119.99776 * 180.02562 * 7 5 4 10 10 H 1.08996 * 109.29845 * 319.58328 * 9 7 5 11 11 C 1.52916 * 109.29936 * 78.96861 * 9 7 5 12 12 C 1.53342 * 108.67757 * 171.06442 * 11 9 7 13 13 C 1.53074 * 108.42463 * 292.47034 * 12 11 9 14 14 C 1.50178 * 109.89240 * 48.89235 * 13 12 11 15 15 O 1.21275 * 118.24686 * 162.39579 * 14 13 12 16 16 N 1.33355 * 123.50709 * 342.42450 * 14 13 12 17 17 C 1.46899 * 111.00532 * 123.96082 * 2 1 3 18 18 C 1.50698 * 109.46987 * 66.04197 * 17 2 1 19 19 O 1.21293 * 120.00006 * 0.02562 * 18 17 2 20 20 N 1.34777 * 119.99538 * 179.97438 * 18 17 2 21 21 C 1.37104 * 119.99773 * 179.72591 * 20 18 17 22 22 H 1.08002 * 119.99671 * 0.27660 * 21 20 18 23 23 C 1.38950 * 120.00030 * 180.27703 * 21 20 18 24 24 N 1.31414 * 119.99926 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99969 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47459 * 59.99812 * 25 23 21 27 27 H 1.48502 * 109.47317 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47211 * 300.00250 * 25 23 21 29 29 H 1.08998 * 109.46586 * 296.04046 * 1 2 3 30 30 H 1.08997 * 109.47601 * 56.04145 * 1 2 3 31 31 H 1.08998 * 109.46729 * 176.04253 * 1 2 3 32 32 H 1.09007 * 109.46705 * 53.96039 * 3 2 1 33 33 H 1.09000 * 109.47150 * 173.95706 * 3 2 1 34 34 H 1.09001 * 109.46824 * 299.99203 * 4 3 2 35 35 H 1.09000 * 109.47457 * 59.99662 * 4 3 2 36 36 H 1.09001 * 109.47252 * 89.99495 * 6 5 4 37 37 H 1.08996 * 109.47213 * 210.00126 * 6 5 4 38 38 H 1.09006 * 109.46593 * 330.00007 * 6 5 4 39 39 H 1.09006 * 109.60327 * 290.82292 * 11 9 7 40 40 H 1.09002 * 109.60334 * 51.30591 * 11 9 7 41 41 H 1.08995 * 109.67728 * 172.73245 * 12 11 9 42 42 H 1.09006 * 109.67270 * 52.19482 * 12 11 9 43 43 H 1.08998 * 109.39882 * 288.76920 * 13 12 11 44 44 H 1.08997 * 109.40504 * 169.02470 * 13 12 11 45 45 H 0.97006 * 117.94292 * 182.19609 * 16 14 13 46 46 H 1.09003 * 109.46477 * 306.04687 * 17 2 1 47 47 H 1.08993 * 109.47002 * 186.05013 * 17 2 1 48 48 H 0.97001 * 120.00485 * 0.02562 * 20 18 17 49 49 H 0.96999 * 119.99863 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6313 2.0576 -1.3181 5 7 2.1558 3.4255 -1.3178 6 6 3.5008 3.6945 -1.8327 7 6 1.4010 4.4364 -0.8439 8 8 0.2878 4.2137 -0.4173 9 6 1.9404 5.8437 -0.8440 10 1 2.9906 5.8270 -0.5526 11 6 1.8197 6.4310 -2.2507 12 6 2.1594 7.9251 -2.1899 13 6 1.0631 8.6385 -1.3947 14 6 0.8057 7.9064 -0.1090 15 8 0.2190 8.4910 0.7768 16 7 1.1882 6.6479 0.1108 17 6 1.9956 -0.7661 1.1374 18 6 1.6371 -2.2205 0.9726 19 8 1.0054 -2.5832 0.0027 20 7 2.0192 -3.1182 1.9024 21 6 1.6881 -4.4406 1.7553 22 1 1.1251 -4.7634 0.8921 23 6 2.0771 -5.3652 2.7168 24 7 2.7618 -4.9722 3.7673 25 14 1.6267 -7.1669 2.5160 26 1 2.2181 -7.6878 1.2573 27 1 2.1542 -7.9405 3.6686 28 1 0.1490 -7.3048 2.4626 29 1 -0.3632 0.4512 0.9233 30 1 -0.3634 0.5740 -0.8523 31 1 -0.3633 -1.0252 -0.0709 32 1 1.5611 1.9273 0.8311 33 1 3.0798 1.3445 0.1082 34 1 2.0657 1.5018 -2.1491 35 1 0.5470 2.0846 -1.4263 36 1 3.4448 3.9107 -2.8996 37 1 3.9252 4.5516 -1.3099 38 1 4.1328 2.8211 -1.6716 39 1 2.5159 5.9246 -2.9194 40 1 0.8003 6.3023 -2.6145 41 1 2.2046 8.3327 -3.1997 42 1 3.1206 8.0630 -1.6946 43 1 0.1473 8.6662 -1.9852 44 1 1.3808 9.6575 -1.1738 45 1 0.9513 6.2425 0.9597 46 1 1.5612 -0.3874 2.0627 47 1 3.0798 -0.6611 1.1754 48 1 2.5246 -2.8282 2.6778 49 1 3.0336 -5.6178 4.4383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715867706.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:09 Heat of formation + Delta-G solvation = -123.542576 kcal Electronic energy + Delta-G solvation = -29653.502194 eV Core-core repulsion = 25421.642384 eV Total energy + Delta-G solvation = -4231.859810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.94322 -40.62385 -40.27366 -38.23225 -37.32558 -36.57860 -35.82557 -33.97491 -33.28821 -31.94236 -30.37018 -29.15008 -27.73895 -27.14677 -26.35668 -24.94632 -23.79572 -22.50639 -21.03042 -20.55952 -20.14637 -19.85502 -18.48308 -18.33829 -17.90192 -17.62538 -16.89418 -16.70028 -16.58743 -16.39064 -16.13236 -15.88503 -15.59538 -15.26351 -15.15592 -15.07044 -14.69834 -14.53210 -14.31829 -14.10471 -13.92862 -13.76357 -13.45111 -13.23742 -13.13221 -13.02506 -12.85037 -12.62732 -12.58996 -12.55309 -12.42190 -12.12617 -11.98558 -11.87646 -11.86648 -11.45782 -11.32117 -10.79583 -10.34769 -10.16355 -10.00554 -9.75744 -9.31123 -8.46234 -5.94920 1.37479 1.39765 1.41681 1.46490 1.52567 1.80871 2.04878 2.25159 2.30909 2.81070 3.20156 3.29652 3.41123 3.55599 3.64671 3.82167 3.89957 3.98619 4.08252 4.19327 4.21264 4.32655 4.40808 4.45871 4.48936 4.52411 4.55787 4.60966 4.73214 4.76386 4.79188 4.84445 4.90382 4.94575 5.06840 5.09862 5.15516 5.29483 5.39867 5.41560 5.58571 5.81554 6.01023 6.12068 6.18859 6.32724 6.60659 6.99294 7.10474 7.13009 7.56241 8.12038 8.70934 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029591 B = 0.001755 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.996077 B =15954.441511 C =16244.179998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.526 5.526 3 C 0.048 3.952 4 C 0.123 3.877 5 N -0.601 5.601 6 C 0.058 3.942 7 C 0.495 3.505 8 O -0.580 6.580 9 C 0.128 3.872 10 H 0.137 0.863 11 C -0.127 4.127 12 C -0.111 4.111 13 C -0.135 4.135 14 C 0.515 3.485 15 O -0.612 6.612 16 N -0.704 5.704 17 C 0.058 3.942 18 C 0.442 3.558 19 O -0.613 6.613 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.274 1.274 29 H 0.015 0.985 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.021 0.979 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.394 0.606 46 H 0.059 0.941 47 H 0.116 0.884 48 H 0.396 0.604 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.322 27.026 -14.057 31.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.251 5.251 3 C -0.080 4.080 4 C -0.001 4.001 5 N -0.334 5.334 6 C -0.083 4.083 7 C 0.282 3.718 8 O -0.459 6.459 9 C 0.020 3.980 10 H 0.154 0.846 11 C -0.165 4.165 12 C -0.148 4.148 13 C -0.174 4.174 14 C 0.305 3.695 15 O -0.495 6.495 16 N -0.354 5.354 17 C -0.073 4.073 18 C 0.229 3.771 19 O -0.499 6.499 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.199 1.199 29 H 0.034 0.966 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.144 0.856 40 H 0.082 0.918 41 H 0.129 0.871 42 H 0.110 0.890 43 H 0.124 0.876 44 H 0.131 0.869 45 H 0.228 0.772 46 H 0.077 0.923 47 H 0.134 0.866 48 H 0.229 0.771 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.356 26.729 -14.543 31.306 hybrid contribution -0.836 -1.036 2.014 2.414 sum 6.520 25.693 -12.529 29.319 Atomic orbital electron populations 1.22414 0.87327 1.02343 0.99831 1.61508 1.08383 1.12958 1.42239 1.22462 1.01135 0.86926 0.97501 1.21332 0.99870 0.81187 0.97666 1.47889 1.17919 1.06164 1.61390 1.22388 0.80427 1.04434 1.01025 1.21417 0.85084 0.88187 0.77087 1.90762 1.21937 1.85158 1.48055 1.21268 0.97412 0.86189 0.93140 0.84562 1.21984 1.04450 0.97790 0.92281 1.21688 0.98036 0.92451 1.02623 1.21769 1.02988 1.00770 0.91892 1.21041 0.76502 0.81360 0.90609 1.90749 1.44570 1.66891 1.47245 1.45456 1.56663 1.13178 1.20067 1.21755 1.02314 0.90329 0.92908 1.20696 0.83775 0.88599 0.84008 1.90459 1.45075 1.81377 1.32954 1.41928 1.49967 1.07109 1.22165 1.19630 1.34425 0.84089 1.08063 0.90223 1.26043 0.96298 1.04352 0.94658 1.69669 1.38153 1.37263 1.11099 0.84985 0.78527 0.76745 0.78053 1.19541 1.19538 1.19899 0.96641 0.90507 0.92068 0.96077 0.88558 0.87798 0.91932 0.89523 0.88205 0.89615 0.85573 0.91842 0.87051 0.88982 0.87555 0.86912 0.77182 0.92305 0.86582 0.77067 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 9.01 127.69 1.15 2.16 16 2 N -0.53 -17.10 4.50 -927.04 -4.17 -21.27 16 3 C 0.05 1.15 5.28 86.30 0.46 1.61 16 4 C 0.12 2.45 5.34 86.38 0.46 2.91 16 5 N -0.60 -8.07 2.87 -846.74 -2.43 -10.50 16 6 C 0.06 0.18 9.51 127.77 1.21 1.39 16 7 C 0.49 8.71 6.84 87.66 0.60 9.31 16 8 O -0.58 -16.81 15.96 -3.03 -0.05 -16.86 16 9 C 0.13 1.25 2.74 44.36 0.12 1.37 16 10 H 0.14 0.39 6.32 -2.39 -0.02 0.37 16 11 C -0.13 -0.54 5.17 30.68 0.16 -0.38 16 12 C -0.11 -0.18 6.03 30.73 0.19 0.01 16 13 C -0.13 -1.22 6.03 29.71 0.18 -1.04 16 14 C 0.52 10.07 7.71 87.71 0.68 10.75 16 15 O -0.61 -18.53 17.78 -3.01 -0.05 -18.59 16 16 N -0.70 -12.16 4.79 -450.23 -2.16 -14.31 16 17 C 0.06 2.04 5.45 85.56 0.47 2.51 16 18 C 0.44 21.14 7.51 87.66 0.66 21.80 16 19 O -0.61 -33.75 13.89 -3.07 -0.04 -33.79 16 20 N -0.57 -29.62 5.29 -306.98 -1.62 -31.24 16 21 C -0.33 -18.93 9.68 84.04 0.81 -18.11 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 24 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 25 Si 0.99 43.06 29.55 68.60 2.03 45.08 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 29 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 2.39 6.30 -2.39 -0.02 2.37 16 31 H 0.06 2.59 5.88 -2.39 -0.01 2.58 16 32 H 0.02 0.56 8.12 -2.38 -0.02 0.54 16 33 H 0.10 1.85 7.93 -2.39 -0.02 1.83 16 34 H 0.10 1.82 8.07 -2.39 -0.02 1.80 16 35 H 0.06 1.59 5.75 -2.39 -0.01 1.58 16 36 H 0.09 -0.06 7.68 -2.39 -0.02 -0.08 16 37 H 0.10 -0.20 5.95 -2.39 -0.01 -0.21 16 38 H 0.09 0.27 8.07 -2.38 -0.02 0.25 16 39 H 0.13 -0.24 6.95 -2.38 -0.02 -0.25 16 40 H 0.06 0.55 8.10 -2.39 -0.02 0.53 16 41 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.09 -0.08 8.13 -2.38 -0.02 -0.10 16 43 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.39 8.40 8.45 -92.70 -0.78 7.62 16 46 H 0.06 1.96 8.12 -2.39 -0.02 1.94 16 47 H 0.12 3.42 7.93 -2.39 -0.02 3.40 16 48 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 49 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -85.32 394.49 -1.13 -86.45 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -0.52 Total: 30.58 kcal Atomic # 6 Polarization: 26.40 SS G_CDS: 7.61 Total: 34.01 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -10.10 Total: -126.89 kcal Atomic # 8 Polarization: -69.09 SS G_CDS: -0.14 Total: -69.23 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -85.32 -1.13 -86.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715867706.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.088 kcal (2) G-P(sol) polarization free energy of solvation -85.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds