Wall clock time and date at job start Sat Apr 11 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47183 * 2 1 4 4 C 1.46497 * 120.00305 * 96.55564 * 3 2 1 5 5 C 1.52998 * 109.47418 * 90.00066 * 4 3 2 6 6 N 1.46896 * 109.47413 * 180.02562 * 5 4 3 7 7 C 1.46900 * 110.99880 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.46879 * 179.97438 * 7 6 5 9 9 O 1.21297 * 120.00494 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99982 * 179.97438 * 8 7 6 11 11 C 1.37103 * 120.00350 * 179.97438 * 10 8 7 12 12 H 1.08007 * 119.99703 * 0.02562 * 11 10 8 13 13 C 1.38942 * 120.00302 * 180.02562 * 11 10 8 14 14 N 1.31417 * 120.00170 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00070 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.46897 * 90.00199 * 15 13 11 17 17 H 1.48498 * 109.47476 * 210.00236 * 15 13 11 18 18 H 1.48501 * 109.47222 * 330.00247 * 15 13 11 19 19 C 1.34775 * 119.99974 * 276.55923 * 3 2 1 20 20 O 1.21284 * 120.00137 * 184.45105 * 19 3 2 21 21 C 1.50706 * 120.00133 * 4.44957 * 19 3 2 22 22 H 1.09000 * 109.39849 * 40.43645 * 21 19 3 23 23 C 1.53073 * 109.40124 * 160.26573 * 21 19 3 24 24 C 1.53340 * 108.42416 * 169.02724 * 23 21 19 25 25 C 1.52917 * 108.67891 * 292.47294 * 24 23 21 26 26 N 1.45759 * 110.48851 * 50.75229 * 25 24 23 27 27 C 1.33242 * 124.06728 * 340.84473 * 26 25 24 28 28 O 1.21272 * 118.15480 * 182.29391 * 27 26 25 29 29 H 1.09003 * 109.47200 * 60.00809 * 1 2 3 30 30 H 1.09003 * 109.46960 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47472 * 299.99983 * 1 2 3 32 32 H 1.09005 * 109.47225 * 239.99882 * 2 1 3 33 33 H 1.08998 * 109.47283 * 119.99931 * 2 1 3 34 34 H 1.09004 * 109.47013 * 330.00259 * 4 3 2 35 35 H 1.09001 * 109.47355 * 210.00521 * 4 3 2 36 36 H 1.09008 * 109.46561 * 300.00561 * 5 4 3 37 37 H 1.08995 * 109.46884 * 59.99920 * 5 4 3 38 38 H 1.00895 * 110.99819 * 303.95392 * 6 5 4 39 39 H 1.08996 * 109.46893 * 299.99340 * 7 6 5 40 40 H 1.08995 * 109.47071 * 59.99777 * 7 6 5 41 41 H 0.96998 * 120.00245 * 0.02562 * 10 8 7 42 42 H 0.96992 * 119.99942 * 179.97438 * 14 13 11 43 43 H 1.08996 * 109.67361 * 288.76353 * 23 21 19 44 44 H 1.09004 * 109.66973 * 49.26194 * 23 21 19 45 45 H 1.09007 * 109.60473 * 52.22853 * 24 23 21 46 46 H 1.08999 * 109.60391 * 172.54916 * 24 23 21 47 47 H 1.09000 * 109.30611 * 171.06289 * 25 24 23 48 48 H 1.09004 * 109.29852 * 290.44253 * 25 24 23 49 49 H 0.96992 * 117.94720 * 160.92767 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3991 2.0235 1.2604 5 6 3.8827 1.7695 1.5345 6 7 4.2644 2.4131 2.7986 7 6 5.6859 2.1903 3.0946 8 6 6.0397 2.8642 4.3953 9 8 5.1911 3.4701 5.0150 10 7 7.2989 2.7928 4.8705 11 6 7.6210 3.4063 6.0535 12 1 6.8655 3.9464 6.6049 13 6 8.9192 3.3331 6.5432 14 7 9.2278 3.9207 7.6774 15 14 10.2260 2.3995 5.5892 16 1 10.9005 3.3221 4.6411 17 1 11.2266 1.8432 6.5350 18 1 9.5897 1.2909 4.8332 19 6 2.1173 2.0609 -1.1595 20 8 2.5968 3.1749 -1.1705 21 6 1.6320 1.4369 -2.4426 22 1 0.6987 0.9056 -2.2565 23 6 1.3939 2.5339 -3.4833 24 6 1.1710 1.8684 -4.8467 25 6 2.4791 1.2132 -5.2916 26 7 3.0137 0.3692 -4.2303 27 6 2.6639 0.4703 -2.9486 28 8 3.2080 -0.2599 -2.1476 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8032 1.6094 2.0738 35 1 2.2212 3.0966 1.1896 36 1 4.0605 0.6964 1.6053 37 1 4.4785 2.1836 0.7212 38 1 4.0490 3.3987 2.7820 39 1 5.8766 1.1202 3.1758 40 1 6.2939 2.6080 2.2922 41 1 7.9775 2.3080 4.3752 42 1 10.1340 3.8693 8.0194 43 1 0.5127 3.1142 -3.2097 44 1 2.2640 3.1887 -3.5319 45 1 0.3929 1.1098 -4.7605 46 1 0.8693 2.6204 -5.5758 47 1 2.2946 0.6050 -6.1771 48 1 3.2055 1.9885 -5.5357 49 1 3.6654 -0.3072 -4.4722 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716222779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:17 Heat of formation + Delta-G solvation = -95.701119 kcal Electronic energy + Delta-G solvation = -29976.503984 eV Core-core repulsion = 25745.851470 eV Total energy + Delta-G solvation = -4230.652514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.54266 -39.47499 -38.39976 -37.24499 -36.43473 -35.29298 -33.88245 -33.57424 -31.63984 -31.31184 -30.52436 -28.96786 -26.46048 -25.27955 -23.76794 -23.60161 -23.29120 -22.14905 -20.19463 -19.33882 -19.06335 -18.29898 -18.03441 -17.53303 -16.96252 -16.49463 -16.12780 -15.60777 -15.48111 -15.07101 -14.84823 -14.76116 -14.43814 -14.38821 -14.03299 -13.96397 -13.85887 -13.61196 -13.30521 -13.02825 -12.82636 -12.67556 -12.42645 -12.29492 -12.14432 -11.97802 -11.92783 -11.82348 -11.55158 -11.51640 -11.17236 -11.15362 -10.96127 -10.54508 -10.19954 -10.05175 -9.92557 -9.62877 -9.51816 -8.86598 -8.50157 -8.13970 -8.07003 -6.26085 -3.77177 1.90298 2.25415 2.73598 2.85262 3.07849 3.11658 3.19142 3.80840 3.90586 3.97818 4.08862 4.13524 4.15050 4.30894 4.44013 4.58896 4.72441 4.79315 4.93008 4.95435 4.96879 5.09406 5.14198 5.17431 5.23178 5.24458 5.30470 5.37432 5.47963 5.55593 5.60464 5.68384 5.70928 5.85804 5.89428 5.91812 5.98084 6.04725 6.19984 6.36298 6.70529 7.14994 7.16871 7.63126 7.63421 7.65486 7.89979 8.19995 8.65526 9.00272 9.48043 9.88844 10.87122 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018327 B = 0.002048 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.406545 B =13665.685522 C =14269.268871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.079 3.921 3 N -0.594 5.594 4 C 0.118 3.882 5 C 0.047 3.953 6 N -0.666 5.666 7 C 0.050 3.950 8 C 0.452 3.548 9 O -0.564 6.564 10 N -0.592 5.592 11 C -0.303 4.303 12 H 0.120 0.880 13 C 0.040 3.960 14 N -0.882 5.882 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.269 1.269 19 C 0.533 3.467 20 O -0.532 6.532 21 C -0.130 4.130 22 H 0.129 0.871 23 C -0.111 4.111 24 C -0.137 4.137 25 C 0.105 3.895 26 N -0.714 5.714 27 C 0.531 3.469 28 O -0.536 6.536 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.351 0.649 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.431 -10.467 -31.358 37.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.043 4.043 3 N -0.325 5.325 4 C -0.005 4.005 5 C -0.083 4.083 6 N -0.299 5.299 7 C -0.083 4.083 8 C 0.238 3.762 9 O -0.446 6.446 10 N -0.231 5.231 11 C -0.432 4.432 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.523 5.523 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.195 1.195 19 C 0.319 3.681 20 O -0.408 6.408 21 C -0.154 4.154 22 H 0.146 0.854 23 C -0.149 4.149 24 C -0.175 4.175 25 C -0.019 4.019 26 N -0.366 5.366 27 C 0.317 3.683 28 O -0.414 6.414 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.170 0.830 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.203 0.797 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.110 0.890 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -18.688 -10.130 -29.884 36.673 hybrid contribution 1.835 -0.507 -1.403 2.365 sum -16.853 -10.637 -31.287 37.095 Atomic orbital electron populations 1.22313 0.96360 1.02372 1.02185 1.22164 0.93665 0.82264 1.06208 1.47772 1.63921 1.14364 1.06457 1.21433 0.95418 0.99169 0.84432 1.22246 0.95491 1.00082 0.90509 1.60027 1.17930 1.19955 1.32005 1.21685 0.89024 1.01350 0.96263 1.19709 0.83099 0.85663 0.87776 1.90560 1.48012 1.45688 1.60327 1.42208 1.09050 1.49376 1.22500 1.19438 0.97065 1.29688 0.97017 0.86267 1.25036 0.97259 0.97677 0.96271 1.69624 1.20375 1.43146 1.19127 0.86667 0.82293 0.80221 0.80207 1.19683 1.20185 1.19456 1.19769 0.78495 0.85479 0.84369 1.90729 1.44230 1.19820 1.86029 1.21574 1.00243 0.98067 0.95557 0.85354 1.21591 1.04641 0.96503 0.92174 1.21911 0.96887 1.00923 0.97760 1.21477 0.96037 0.94654 0.89701 1.45350 1.45664 1.38499 1.07060 1.19480 0.82958 0.83453 0.82382 1.90712 1.53522 1.44418 1.52725 0.92922 0.91297 0.92012 0.87236 0.89796 0.89209 0.89871 0.90975 0.95099 0.82953 0.89483 0.93748 0.79684 0.91668 0.89872 0.89340 0.90739 0.88979 0.90087 0.91135 0.75965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.00 37.16 0.37 -0.76 16 2 C 0.08 0.70 5.53 -4.04 -0.02 0.68 16 3 N -0.59 -6.65 2.46 -173.69 -0.43 -7.07 16 4 C 0.12 1.48 5.60 -4.04 -0.02 1.46 16 5 C 0.05 0.69 6.01 -3.83 -0.02 0.66 16 6 N -0.67 -11.51 6.13 -115.07 -0.70 -12.21 16 7 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 8 C 0.45 10.87 7.82 -10.99 -0.09 10.79 16 9 O -0.56 -15.81 15.78 5.54 0.09 -15.72 16 10 N -0.59 -14.80 5.09 -10.96 -0.06 -14.86 16 11 C -0.30 -8.88 10.16 -14.93 -0.15 -9.03 16 12 H 0.12 3.96 7.39 -52.48 -0.39 3.58 16 13 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 14 N -0.88 -26.41 13.96 55.50 0.77 -25.64 16 15 Si 0.88 20.07 27.74 -169.99 -4.71 15.36 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.27 -5.65 6.52 56.52 0.37 -5.28 16 19 C 0.53 6.35 6.47 -10.98 -0.07 6.28 16 20 O -0.53 -8.15 15.42 5.55 0.09 -8.06 16 21 C -0.13 -1.04 2.02 -93.14 -0.19 -1.23 16 22 H 0.13 0.76 5.39 -51.93 -0.28 0.48 16 23 C -0.11 -0.67 5.00 -26.52 -0.13 -0.81 16 24 C -0.14 -0.39 6.02 -26.60 -0.16 -0.55 16 25 C 0.11 0.31 7.17 -4.48 -0.03 0.28 16 26 N -0.71 -4.11 5.44 -61.42 -0.33 -4.45 16 27 C 0.53 4.72 7.10 -11.92 -0.08 4.63 16 28 O -0.54 -6.47 14.08 5.56 0.08 -6.39 16 29 H 0.05 0.30 6.12 -51.93 -0.32 -0.02 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.11 1.05 4.16 -51.93 -0.22 0.83 16 33 H 0.08 0.75 8.02 -51.93 -0.42 0.33 16 34 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 35 H 0.08 1.13 7.49 -51.93 -0.39 0.74 16 36 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.35 6.29 8.43 -39.29 -0.33 5.96 16 39 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.37 8.19 5.76 -40.82 -0.24 7.96 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.72 7.48 -51.93 -0.39 0.33 16 45 H 0.07 0.16 8.12 -51.93 -0.42 -0.26 16 46 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 47 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 48 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 49 H 0.40 1.96 8.80 -40.82 -0.36 1.60 16 LS Contribution 392.36 15.07 5.91 5.91 Total: -1.00 -37.61 392.36 -7.59 -45.20 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -7.56 Total: 13.60 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: -0.73 Total: 14.33 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -0.75 Total: -64.23 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: 0.25 Total: -30.17 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.71 Total: 15.36 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.61 -7.59 -45.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716222779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.501 kcal (2) G-P(sol) polarization free energy of solvation -37.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds