Wall clock time and date at job start Sat Apr 11 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47183 * 2 1 4 4 C 1.46497 * 120.00305 * 96.55564 * 3 2 1 5 5 C 1.52998 * 109.47418 * 90.00066 * 4 3 2 6 6 N 1.46896 * 109.47413 * 180.02562 * 5 4 3 7 7 C 1.46900 * 110.99880 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.46879 * 179.97438 * 7 6 5 9 9 O 1.21297 * 120.00494 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99982 * 179.97438 * 8 7 6 11 11 C 1.37103 * 120.00350 * 179.97438 * 10 8 7 12 12 H 1.08007 * 119.99703 * 0.02562 * 11 10 8 13 13 C 1.38942 * 120.00302 * 180.02562 * 11 10 8 14 14 N 1.31417 * 120.00170 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00070 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.46897 * 90.00199 * 15 13 11 17 17 H 1.48498 * 109.47476 * 210.00236 * 15 13 11 18 18 H 1.48501 * 109.47222 * 330.00247 * 15 13 11 19 19 C 1.34775 * 119.99974 * 276.55923 * 3 2 1 20 20 O 1.21284 * 120.00137 * 184.45105 * 19 3 2 21 21 C 1.50706 * 120.00133 * 4.44957 * 19 3 2 22 22 H 1.09000 * 109.39849 * 40.43645 * 21 19 3 23 23 C 1.53073 * 109.40124 * 160.26573 * 21 19 3 24 24 C 1.53340 * 108.42416 * 169.02724 * 23 21 19 25 25 C 1.52917 * 108.67891 * 292.47294 * 24 23 21 26 26 N 1.45759 * 110.48851 * 50.75229 * 25 24 23 27 27 C 1.33242 * 124.06728 * 340.84473 * 26 25 24 28 28 O 1.21272 * 118.15480 * 182.29391 * 27 26 25 29 29 H 1.09003 * 109.47200 * 60.00809 * 1 2 3 30 30 H 1.09003 * 109.46960 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47472 * 299.99983 * 1 2 3 32 32 H 1.09005 * 109.47225 * 239.99882 * 2 1 3 33 33 H 1.08998 * 109.47283 * 119.99931 * 2 1 3 34 34 H 1.09004 * 109.47013 * 330.00259 * 4 3 2 35 35 H 1.09001 * 109.47355 * 210.00521 * 4 3 2 36 36 H 1.09008 * 109.46561 * 300.00561 * 5 4 3 37 37 H 1.08995 * 109.46884 * 59.99920 * 5 4 3 38 38 H 1.00895 * 110.99819 * 303.95392 * 6 5 4 39 39 H 1.08996 * 109.46893 * 299.99340 * 7 6 5 40 40 H 1.08995 * 109.47071 * 59.99777 * 7 6 5 41 41 H 0.96998 * 120.00245 * 0.02562 * 10 8 7 42 42 H 0.96992 * 119.99942 * 179.97438 * 14 13 11 43 43 H 1.08996 * 109.67361 * 288.76353 * 23 21 19 44 44 H 1.09004 * 109.66973 * 49.26194 * 23 21 19 45 45 H 1.09007 * 109.60473 * 52.22853 * 24 23 21 46 46 H 1.08999 * 109.60391 * 172.54916 * 24 23 21 47 47 H 1.09000 * 109.30611 * 171.06289 * 25 24 23 48 48 H 1.09004 * 109.29852 * 290.44253 * 25 24 23 49 49 H 0.96992 * 117.94720 * 160.92767 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3991 2.0235 1.2604 5 6 3.8827 1.7695 1.5345 6 7 4.2644 2.4131 2.7986 7 6 5.6859 2.1903 3.0946 8 6 6.0397 2.8642 4.3953 9 8 5.1911 3.4701 5.0150 10 7 7.2989 2.7928 4.8705 11 6 7.6210 3.4063 6.0535 12 1 6.8655 3.9464 6.6049 13 6 8.9192 3.3331 6.5432 14 7 9.2278 3.9207 7.6774 15 14 10.2260 2.3995 5.5892 16 1 10.9005 3.3221 4.6411 17 1 11.2266 1.8432 6.5350 18 1 9.5897 1.2909 4.8332 19 6 2.1173 2.0609 -1.1595 20 8 2.5968 3.1749 -1.1705 21 6 1.6320 1.4369 -2.4426 22 1 0.6987 0.9056 -2.2565 23 6 1.3939 2.5339 -3.4833 24 6 1.1710 1.8684 -4.8467 25 6 2.4791 1.2132 -5.2916 26 7 3.0137 0.3692 -4.2303 27 6 2.6639 0.4703 -2.9486 28 8 3.2080 -0.2599 -2.1476 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8032 1.6094 2.0738 35 1 2.2212 3.0966 1.1896 36 1 4.0605 0.6964 1.6053 37 1 4.4785 2.1836 0.7212 38 1 4.0490 3.3987 2.7820 39 1 5.8766 1.1202 3.1758 40 1 6.2939 2.6080 2.2922 41 1 7.9775 2.3080 4.3752 42 1 10.1340 3.8693 8.0194 43 1 0.5127 3.1142 -3.2097 44 1 2.2640 3.1887 -3.5319 45 1 0.3929 1.1098 -4.7605 46 1 0.8693 2.6204 -5.5758 47 1 2.2946 0.6050 -6.1771 48 1 3.2055 1.9885 -5.5357 49 1 3.6654 -0.3072 -4.4722 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716222779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:17 Heat of formation + Delta-G solvation = -127.534794 kcal Electronic energy + Delta-G solvation = -29977.884396 eV Core-core repulsion = 25745.851470 eV Total energy + Delta-G solvation = -4232.032926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23474 -40.42671 -40.18535 -37.95971 -37.35982 -36.53756 -35.88864 -34.20622 -33.78120 -32.20638 -31.05491 -30.06745 -27.89231 -26.22768 -25.20993 -24.37095 -23.81032 -23.27918 -21.38264 -20.81419 -20.28030 -19.74316 -18.74174 -18.23106 -17.88905 -17.59960 -17.30631 -17.15667 -16.72316 -16.12578 -15.90325 -15.67030 -15.41774 -15.28621 -15.16454 -15.05776 -14.77681 -14.57695 -14.48575 -14.35329 -14.22137 -13.88351 -13.57017 -13.49088 -13.18474 -13.02484 -12.80419 -12.70310 -12.44709 -12.44077 -12.34229 -12.13007 -12.00022 -11.89135 -11.73253 -11.55154 -11.04969 -10.78436 -10.52190 -10.28433 -10.10265 -9.72524 -9.50069 -8.43956 -6.05070 1.16135 1.28437 1.32876 1.42163 1.50261 1.89356 1.91388 2.20431 2.31373 2.70784 3.11656 3.24258 3.40649 3.47682 3.63612 3.81437 3.91326 4.01170 4.07007 4.10907 4.15368 4.19257 4.34444 4.39371 4.44001 4.49039 4.49511 4.63772 4.72558 4.73972 4.82478 4.83932 4.92108 5.00610 5.03864 5.08578 5.30437 5.37513 5.45639 5.51507 5.75739 5.81195 5.94392 6.18966 6.21984 6.31534 6.55809 6.83747 7.00244 7.07202 7.34941 7.90414 8.73534 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018327 B = 0.002048 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.406545 B =13665.685522 C =14269.268871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.077 3.923 3 N -0.593 5.593 4 C 0.122 3.878 5 C 0.059 3.941 6 N -0.676 5.676 7 C 0.062 3.938 8 C 0.450 3.550 9 O -0.611 6.611 10 N -0.589 5.589 11 C -0.330 4.330 12 H 0.057 0.943 13 C -0.014 4.014 14 N -0.932 5.932 15 Si 0.964 3.036 16 H -0.258 1.258 17 H -0.272 1.272 18 H -0.234 1.234 19 C 0.524 3.476 20 O -0.575 6.575 21 C -0.124 4.124 22 H 0.152 0.848 23 C -0.111 4.111 24 C -0.130 4.130 25 C 0.098 3.902 26 N -0.704 5.704 27 C 0.526 3.474 28 O -0.575 6.575 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.016 0.984 38 H 0.345 0.655 39 H 0.115 0.885 40 H 0.069 0.931 41 H 0.389 0.611 42 H 0.280 0.720 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.072 0.928 49 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.532 -13.069 -35.120 41.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.044 4.044 3 N -0.323 5.323 4 C -0.001 4.001 5 C -0.071 4.071 6 N -0.308 5.308 7 C -0.070 4.070 8 C 0.238 3.762 9 O -0.496 6.496 10 N -0.231 5.231 11 C -0.459 4.459 12 H 0.075 0.925 13 C -0.213 4.213 14 N -0.572 5.572 15 Si 0.784 3.216 16 H -0.182 1.182 17 H -0.196 1.196 18 H -0.157 1.157 19 C 0.311 3.689 20 O -0.455 6.455 21 C -0.147 4.147 22 H 0.169 0.831 23 C -0.149 4.149 24 C -0.167 4.167 25 C -0.025 4.025 26 N -0.355 5.355 27 C 0.312 3.688 28 O -0.457 6.457 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.035 0.965 38 H 0.163 0.837 39 H 0.133 0.867 40 H 0.087 0.913 41 H 0.225 0.775 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.132 0.868 47 H 0.130 0.870 48 H 0.090 0.910 49 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -18.817 -12.765 -33.709 40.661 hybrid contribution 1.782 0.378 -0.203 1.833 sum -17.035 -12.387 -33.912 39.921 Atomic orbital electron populations 1.22263 0.94283 1.03627 1.02416 1.22301 0.95333 0.80723 1.06075 1.47903 1.63426 1.15160 1.05836 1.21294 0.94456 0.98667 0.85713 1.22193 0.96384 0.99961 0.88541 1.60053 1.17365 1.19739 1.33672 1.21618 0.90059 1.02208 0.93160 1.20811 0.82118 0.84315 0.88982 1.90538 1.49355 1.47494 1.62182 1.42023 1.10060 1.49562 1.21461 1.19023 0.96675 1.31294 0.98893 0.92489 1.26110 0.99700 0.98264 0.97238 1.69798 1.21611 1.44513 1.21280 0.85370 0.77962 0.79430 0.78821 1.18214 1.19644 1.15723 1.20496 0.77718 0.85056 0.85621 1.90701 1.46215 1.21768 1.86799 1.21593 1.00727 0.98540 0.93889 0.83117 1.21615 1.03743 0.95858 0.93671 1.21937 0.97190 1.01596 0.95996 1.21768 0.96090 0.94928 0.89685 1.45406 1.45015 1.38372 1.06670 1.19625 0.82947 0.83181 0.83092 1.90688 1.55040 1.45994 1.53977 0.91889 0.89492 0.92584 0.87419 0.89895 0.88066 0.91359 0.90072 0.96526 0.83711 0.86725 0.91294 0.77503 0.91043 0.89349 0.91861 0.89268 0.86836 0.86965 0.91003 0.75435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.00 71.98 0.72 -1.12 16 2 C 0.08 1.27 5.53 86.38 0.48 1.75 16 3 N -0.59 -13.04 2.46 -821.81 -2.02 -15.07 16 4 C 0.12 3.07 5.60 86.38 0.48 3.55 16 5 C 0.06 1.68 6.01 86.30 0.52 2.20 16 6 N -0.68 -23.08 6.13 -517.96 -3.17 -26.26 16 7 C 0.06 2.18 6.17 85.56 0.53 2.71 16 8 C 0.45 21.80 7.82 87.66 0.69 22.49 16 9 O -0.61 -35.64 15.78 -3.08 -0.05 -35.69 16 10 N -0.59 -29.42 5.09 -306.98 -1.56 -30.98 16 11 C -0.33 -20.02 10.16 84.04 0.85 -19.17 16 12 H 0.06 4.09 7.39 -2.91 -0.02 4.07 16 13 C -0.01 -0.82 5.50 84.92 0.47 -0.35 16 14 N -0.93 -57.37 13.96 21.66 0.30 -57.06 16 15 Si 0.96 40.31 27.74 68.60 1.90 42.21 16 16 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 17 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 18 H -0.23 -8.39 6.52 99.48 0.65 -7.74 16 19 C 0.52 12.46 6.47 87.66 0.57 13.03 16 20 O -0.58 -18.21 15.42 -3.04 -0.05 -18.25 16 21 C -0.12 -1.84 2.02 -12.43 -0.03 -1.86 16 22 H 0.15 1.45 5.39 -2.39 -0.01 1.44 16 23 C -0.11 -1.20 5.00 30.73 0.15 -1.04 16 24 C -0.13 -0.34 6.02 30.68 0.18 -0.15 16 25 C 0.10 0.29 7.17 86.49 0.62 0.91 16 26 N -0.70 -6.75 5.44 -467.47 -2.55 -9.30 16 27 C 0.53 8.70 7.10 87.73 0.62 9.32 16 28 O -0.58 -13.51 14.08 -3.00 -0.04 -13.56 16 29 H 0.06 0.55 6.12 -2.39 -0.01 0.54 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.11 1.93 4.16 -2.38 -0.01 1.92 16 33 H 0.08 1.37 8.02 -2.39 -0.02 1.35 16 34 H 0.10 2.28 8.07 -2.38 -0.02 2.26 16 35 H 0.07 1.92 7.49 -2.39 -0.02 1.90 16 36 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.34 12.59 8.43 -89.70 -0.76 11.83 16 39 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.39 16.27 5.76 -92.71 -0.53 15.74 16 42 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.06 1.02 7.48 -2.38 -0.02 1.00 16 45 H 0.09 0.03 8.12 -2.38 -0.02 0.01 16 46 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 47 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 48 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 49 H 0.41 3.24 8.80 -92.71 -0.82 2.43 16 Total: -1.00 -88.25 392.36 -1.54 -89.79 By element: Atomic # 1 Polarization: 43.05 SS G_CDS: -1.16 Total: 41.89 kcal Atomic # 6 Polarization: 25.42 SS G_CDS: 6.86 Total: 32.27 kcal Atomic # 7 Polarization: -129.66 SS G_CDS: -9.00 Total: -138.66 kcal Atomic # 8 Polarization: -67.37 SS G_CDS: -0.14 Total: -67.50 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.90 Total: 42.21 kcal Total: -88.25 -1.54 -89.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716222779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.740 kcal (2) G-P(sol) polarization free energy of solvation -88.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds