Wall clock time and date at job start Sat Apr 11 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 120.00055 * 2 1 4 4 H 1.07994 * 119.99679 * 202.34685 * 3 2 1 5 5 C 1.38815 * 120.00192 * 22.34285 * 3 2 1 6 6 N 1.31616 * 119.99792 * 11.34962 * 5 3 2 7 7 Si 1.86797 * 120.00042 * 191.34408 * 5 3 2 8 8 H 1.48505 * 109.47025 * 60.00323 * 7 5 3 9 9 H 1.48501 * 109.46927 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47394 * 300.00201 * 7 5 3 11 11 C 1.46499 * 119.99848 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.46845 * 270.00396 * 11 2 1 13 13 C 1.53006 * 109.46788 * 180.02562 * 12 11 2 14 14 N 1.46505 * 109.47127 * 179.97438 * 13 12 11 15 15 C 1.46491 * 120.00382 * 270.00402 * 14 13 12 16 16 C 1.34781 * 119.99518 * 89.99609 * 14 13 12 17 17 O 1.21276 * 120.00103 * 0.02562 * 16 14 13 18 18 C 1.50700 * 119.99627 * 179.97438 * 16 14 13 19 19 C 1.53000 * 109.46886 * 180.02562 * 18 16 14 20 20 C 1.52998 * 109.47382 * 180.02562 * 19 18 16 21 21 N 1.46496 * 109.47445 * 180.02562 * 20 19 18 22 22 C 1.34769 * 124.17326 * 269.72259 * 21 20 19 23 23 O 1.21226 * 127.15913 * 359.97438 * 22 21 20 24 24 C 1.51586 * 105.68276 * 179.97438 * 22 21 20 25 25 N 1.47317 * 103.59303 * 0.31876 * 24 22 21 26 26 C 1.33790 * 124.18175 * 90.02219 * 21 20 19 27 27 O 1.21541 * 123.76972 * 359.96558 * 26 21 20 28 28 H 1.08998 * 109.47559 * 274.21326 * 1 2 3 29 29 H 1.09002 * 109.46815 * 34.21139 * 1 2 3 30 30 H 1.09000 * 109.47514 * 154.20944 * 1 2 3 31 31 H 0.97000 * 120.00366 * 180.02562 * 6 5 3 32 32 H 1.08992 * 109.46975 * 149.99918 * 11 2 1 33 33 H 1.09005 * 109.46841 * 30.00036 * 11 2 1 34 34 H 1.08992 * 109.47724 * 59.99981 * 12 11 2 35 35 H 1.09005 * 109.47107 * 299.99477 * 12 11 2 36 36 H 1.09001 * 109.46999 * 60.00118 * 13 12 11 37 37 H 1.08993 * 109.47224 * 299.99750 * 13 12 11 38 38 H 1.09005 * 109.47009 * 269.99597 * 15 14 13 39 39 H 1.08998 * 109.47364 * 29.99424 * 15 14 13 40 40 H 1.09004 * 109.47382 * 149.99730 * 15 14 13 41 41 H 1.08999 * 109.47274 * 60.00770 * 18 16 14 42 42 H 1.08995 * 109.47607 * 300.00355 * 18 16 14 43 43 H 1.09006 * 109.47160 * 299.99955 * 19 18 16 44 44 H 1.09001 * 109.47468 * 60.00066 * 19 18 16 45 45 H 1.09006 * 109.46637 * 299.99908 * 20 19 18 46 46 H 1.09001 * 109.47065 * 59.99451 * 20 19 18 47 47 H 1.09007 * 110.76667 * 241.71605 * 24 22 21 48 48 H 1.08996 * 110.56617 * 118.82931 * 24 22 21 49 49 H 0.97000 * 126.68889 * 179.77446 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2210 -0.3556 5 6 1.5339 2.3430 0.4570 6 7 0.3842 2.2691 1.0935 7 14 2.3368 4.0047 0.1687 8 1 2.4917 4.2331 -1.2905 9 1 1.4851 5.0735 0.7498 10 1 3.6721 4.0287 0.8179 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7098 1.4433 13 6 3.2179 -3.0345 1.4438 14 7 3.4625 -3.4566 2.8253 15 6 4.6832 -3.0328 3.5155 16 6 2.5643 -4.2347 3.4612 17 8 1.5539 -4.5858 2.8897 18 6 2.8162 -4.6693 4.8820 19 6 1.6526 -5.5383 5.3633 20 6 1.9079 -5.9791 6.8060 21 7 0.7940 -6.8117 7.2667 22 6 -0.3058 -6.3325 7.8808 23 8 -0.5505 -5.1753 8.1465 24 6 -1.1732 -7.5416 8.1701 25 7 -0.3840 -8.6681 7.6424 26 6 0.7454 -8.1422 7.1349 27 8 1.6243 -8.8023 6.6162 28 1 -0.3634 0.0755 1.0248 29 1 -0.3633 0.8499 -0.5778 30 1 -0.3634 -0.9253 -0.4471 31 1 -0.0464 3.0776 1.4126 32 1 3.1498 -1.1386 -0.5133 33 1 1.6083 -2.0286 -0.5130 34 1 1.5000 -1.8398 1.9571 35 1 3.0415 -0.9499 1.9568 36 1 4.1704 -2.9040 0.9302 37 1 2.6293 -3.7945 0.9302 38 1 5.4707 -3.7668 3.3445 39 1 5.0003 -2.0635 3.1308 40 1 4.4870 -2.9529 4.5847 41 1 2.9023 -3.7905 5.5210 42 1 3.7414 -5.2438 4.9277 43 1 0.7271 -4.9642 5.3176 44 1 1.5668 -6.4172 4.7243 45 1 2.8334 -6.5532 6.8521 46 1 1.9934 -5.1001 7.4448 47 1 -2.1282 -7.4655 7.6501 48 1 -1.3298 -7.6525 9.2431 49 1 -0.6309 -9.6060 7.6576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717214972.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:30 Heat of formation + Delta-G solvation = -55.409166 kcal Electronic energy + Delta-G solvation = -29429.514246 eV Core-core repulsion = 25200.608922 eV Total energy + Delta-G solvation = -4228.905324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.69722 -39.83523 -38.94499 -36.49105 -36.42305 -35.88703 -35.21336 -33.22744 -32.12187 -30.21902 -28.45779 -27.61345 -26.89377 -25.80434 -25.10855 -23.34605 -23.00703 -21.70442 -20.72468 -20.13121 -19.00407 -18.42848 -17.50823 -17.23577 -16.84156 -16.66731 -16.16222 -15.97195 -15.68372 -15.56918 -14.66784 -14.62098 -14.55431 -14.44361 -14.22926 -13.96399 -13.50523 -13.34072 -13.15373 -12.82428 -12.70633 -12.59134 -12.37222 -12.21214 -11.89450 -11.44083 -11.34293 -11.26132 -11.05797 -10.86152 -10.77494 -10.64560 -10.63515 -10.37873 -10.20597 -10.02403 -9.96142 -9.85120 -9.66852 -9.61402 -8.53883 -8.44539 -6.67234 -5.65221 -3.10817 1.22757 1.77308 2.58821 2.69273 2.75407 3.13725 3.41151 3.46482 3.47635 3.55679 4.31117 4.39465 4.49892 4.55102 4.62798 4.65880 4.91828 4.94134 5.06867 5.11328 5.19206 5.30251 5.32716 5.36749 5.48094 5.52031 5.59387 5.69038 5.81167 5.92985 6.03197 6.11577 6.19754 6.27696 6.32129 6.56122 6.61791 6.74584 6.89211 6.94227 6.96184 7.20941 7.47899 7.51011 7.69065 7.81409 7.88028 8.30877 8.47600 9.31180 9.95343 10.45245 11.39855 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015865 B = 0.001995 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.440600 B =14033.386239 C =14734.385733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.603 5.603 3 C -0.251 4.251 4 H 0.067 0.933 5 C -0.002 4.002 6 N -0.909 5.909 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.156 3.844 12 C -0.149 4.149 13 C 0.115 3.885 14 N -0.615 5.615 15 C 0.077 3.923 16 C 0.511 3.489 17 O -0.538 6.538 18 C -0.135 4.135 19 C -0.121 4.121 20 C 0.119 3.881 21 N -0.576 5.576 22 C 0.518 3.482 23 O -0.462 6.462 24 C 0.062 3.938 25 N -0.730 5.730 26 C 0.701 3.299 27 O -0.541 6.541 28 H 0.026 0.974 29 H 0.044 0.956 30 H -0.004 1.004 31 H 0.252 0.748 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.125 0.875 48 H 0.124 0.876 49 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.938 -22.541 16.575 28.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.326 5.326 3 C -0.381 4.381 4 H 0.085 0.915 5 C -0.199 4.199 6 N -0.554 5.554 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.028 3.972 12 C -0.191 4.191 13 C -0.007 4.007 14 N -0.348 5.348 15 C -0.066 4.066 16 C 0.299 3.701 17 O -0.415 6.415 18 C -0.176 4.176 19 C -0.160 4.160 20 C -0.002 4.002 21 N -0.322 5.322 22 C 0.305 3.695 23 O -0.331 6.331 24 C -0.066 4.066 25 N -0.396 5.396 26 C 0.402 3.598 27 O -0.414 6.414 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.015 0.985 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.143 0.857 48 H 0.141 0.859 49 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 2.694 -22.197 16.156 27.586 hybrid contribution 0.306 0.721 0.117 0.792 sum 3.000 -21.476 16.273 27.112 Atomic orbital electron populations 1.20779 0.82542 0.95470 0.99196 1.43973 1.01970 1.00710 1.85928 1.19166 0.97880 0.85501 1.35575 0.91517 1.25046 0.97786 0.98486 0.98632 1.70069 1.17864 1.27030 1.40480 0.86334 0.78419 0.83911 0.77837 1.21127 1.21681 1.21055 1.20733 0.95589 0.88193 0.92702 1.22603 1.00014 0.94479 1.01957 1.21641 1.00415 0.97866 0.80797 1.47960 1.21263 1.50495 1.15076 1.21803 0.86410 1.00815 0.97600 1.20503 0.83048 0.78188 0.88371 1.90709 1.26881 1.55967 1.67926 1.21564 1.00256 1.01298 0.94446 1.21673 0.99176 1.00794 0.94340 1.21765 0.87571 0.94627 0.96227 1.46371 1.21715 1.08498 1.55610 1.20919 0.81973 0.90202 0.76367 1.90868 1.73804 1.18129 1.50319 1.22488 0.96783 0.83957 1.03353 1.45429 1.20003 1.10169 1.63949 1.15881 0.83268 0.81585 0.79098 1.91034 1.40278 1.62670 1.47408 0.95527 0.93772 0.98523 0.93782 0.93996 0.94482 0.92442 0.92047 0.91040 0.90404 0.92735 0.90546 0.91199 0.88489 0.88652 0.90372 0.90302 0.88384 0.88459 0.85717 0.85863 0.71435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.36 9.01 59.85 0.54 4.90 16 2 N -0.60 -15.96 2.93 -181.12 -0.53 -16.49 16 3 C -0.25 -7.09 9.67 -15.06 -0.15 -7.24 16 4 H 0.07 1.82 7.84 -52.49 -0.41 1.41 16 5 C 0.00 -0.04 5.13 -17.43 -0.09 -0.13 16 6 N -0.91 -27.39 10.58 55.49 0.59 -26.81 16 7 Si 0.90 22.25 29.57 -169.99 -5.03 17.23 16 8 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.16 3.34 5.71 -4.04 -0.02 3.32 16 12 C -0.15 -2.95 5.86 -26.73 -0.16 -3.10 16 13 C 0.12 1.79 5.41 -4.04 -0.02 1.77 16 14 N -0.61 -8.46 2.87 -181.57 -0.52 -8.98 16 15 C 0.08 0.74 10.24 59.84 0.61 1.35 16 16 C 0.51 7.51 7.67 -10.98 -0.08 7.43 16 17 O -0.54 -10.20 15.56 5.56 0.09 -10.12 16 18 C -0.14 -1.33 4.25 -27.88 -0.12 -1.45 16 19 C -0.12 -1.29 4.83 -26.73 -0.13 -1.42 16 20 C 0.12 0.99 5.70 -4.05 -0.02 0.97 16 21 N -0.58 -5.00 2.60 -120.73 -0.31 -5.32 16 22 C 0.52 4.20 8.32 -10.55 -0.09 4.11 16 23 O -0.46 -5.32 17.75 5.60 0.10 -5.22 16 24 C 0.06 0.22 7.97 -4.31 -0.03 0.18 16 25 N -0.73 -3.48 6.58 -65.73 -0.43 -3.92 16 26 C 0.70 6.32 8.62 -88.02 -0.76 5.56 16 27 O -0.54 -6.82 17.48 5.33 0.09 -6.72 16 28 H 0.03 0.76 7.42 -51.93 -0.39 0.37 16 29 H 0.04 1.23 7.19 -51.93 -0.37 0.86 16 30 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 31 H 0.25 7.36 8.31 -40.82 -0.34 7.03 16 32 H 0.04 0.84 8.03 -51.93 -0.42 0.43 16 33 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 37 H 0.08 1.29 7.42 -51.93 -0.39 0.90 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 40 H 0.07 0.54 6.44 -51.93 -0.33 0.20 16 41 H 0.10 0.80 7.40 -51.93 -0.38 0.42 16 42 H 0.10 0.70 8.11 -51.93 -0.42 0.28 16 43 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 44 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 45 H 0.10 0.72 7.86 -51.93 -0.41 0.31 16 46 H 0.10 0.71 8.00 -51.93 -0.42 0.29 16 47 H 0.13 0.23 8.14 -51.92 -0.42 -0.20 16 48 H 0.12 0.11 8.14 -51.93 -0.42 -0.31 16 49 H 0.44 1.04 8.96 -40.82 -0.37 0.68 16 LS Contribution 407.40 15.07 6.14 6.14 Total: -1.00 -39.06 407.40 -8.39 -47.44 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -8.05 Total: -3.47 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: -0.52 Total: 16.24 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -1.21 Total: -61.51 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.28 Total: -22.07 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -39.06 -8.39 -47.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717214972.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.964 kcal (2) G-P(sol) polarization free energy of solvation -39.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds