Wall clock time and date at job start Sat Apr 11 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 120.00055 * 2 1 4 4 H 1.07994 * 119.99679 * 202.34685 * 3 2 1 5 5 C 1.38815 * 120.00192 * 22.34285 * 3 2 1 6 6 N 1.31616 * 119.99792 * 11.34962 * 5 3 2 7 7 Si 1.86797 * 120.00042 * 191.34408 * 5 3 2 8 8 H 1.48505 * 109.47025 * 60.00323 * 7 5 3 9 9 H 1.48501 * 109.46927 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47394 * 300.00201 * 7 5 3 11 11 C 1.46499 * 119.99848 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.46845 * 270.00396 * 11 2 1 13 13 C 1.53006 * 109.46788 * 180.02562 * 12 11 2 14 14 N 1.46505 * 109.47127 * 179.97438 * 13 12 11 15 15 C 1.46491 * 120.00382 * 270.00402 * 14 13 12 16 16 C 1.34781 * 119.99518 * 89.99609 * 14 13 12 17 17 O 1.21276 * 120.00103 * 0.02562 * 16 14 13 18 18 C 1.50700 * 119.99627 * 179.97438 * 16 14 13 19 19 C 1.53000 * 109.46886 * 180.02562 * 18 16 14 20 20 C 1.52998 * 109.47382 * 180.02562 * 19 18 16 21 21 N 1.46496 * 109.47445 * 180.02562 * 20 19 18 22 22 C 1.34769 * 124.17326 * 269.72259 * 21 20 19 23 23 O 1.21226 * 127.15913 * 359.97438 * 22 21 20 24 24 C 1.51586 * 105.68276 * 179.97438 * 22 21 20 25 25 N 1.47317 * 103.59303 * 0.31876 * 24 22 21 26 26 C 1.33790 * 124.18175 * 90.02219 * 21 20 19 27 27 O 1.21541 * 123.76972 * 359.96558 * 26 21 20 28 28 H 1.08998 * 109.47559 * 274.21326 * 1 2 3 29 29 H 1.09002 * 109.46815 * 34.21139 * 1 2 3 30 30 H 1.09000 * 109.47514 * 154.20944 * 1 2 3 31 31 H 0.97000 * 120.00366 * 180.02562 * 6 5 3 32 32 H 1.08992 * 109.46975 * 149.99918 * 11 2 1 33 33 H 1.09005 * 109.46841 * 30.00036 * 11 2 1 34 34 H 1.08992 * 109.47724 * 59.99981 * 12 11 2 35 35 H 1.09005 * 109.47107 * 299.99477 * 12 11 2 36 36 H 1.09001 * 109.46999 * 60.00118 * 13 12 11 37 37 H 1.08993 * 109.47224 * 299.99750 * 13 12 11 38 38 H 1.09005 * 109.47009 * 269.99597 * 15 14 13 39 39 H 1.08998 * 109.47364 * 29.99424 * 15 14 13 40 40 H 1.09004 * 109.47382 * 149.99730 * 15 14 13 41 41 H 1.08999 * 109.47274 * 60.00770 * 18 16 14 42 42 H 1.08995 * 109.47607 * 300.00355 * 18 16 14 43 43 H 1.09006 * 109.47160 * 299.99955 * 19 18 16 44 44 H 1.09001 * 109.47468 * 60.00066 * 19 18 16 45 45 H 1.09006 * 109.46637 * 299.99908 * 20 19 18 46 46 H 1.09001 * 109.47065 * 59.99451 * 20 19 18 47 47 H 1.09007 * 110.76667 * 241.71605 * 24 22 21 48 48 H 1.08996 * 110.56617 * 118.82931 * 24 22 21 49 49 H 0.97000 * 126.68889 * 179.77446 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2210 -0.3556 5 6 1.5339 2.3430 0.4570 6 7 0.3842 2.2691 1.0935 7 14 2.3368 4.0047 0.1687 8 1 2.4917 4.2331 -1.2905 9 1 1.4851 5.0735 0.7498 10 1 3.6721 4.0287 0.8179 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7098 1.4433 13 6 3.2179 -3.0345 1.4438 14 7 3.4625 -3.4566 2.8253 15 6 4.6832 -3.0328 3.5155 16 6 2.5643 -4.2347 3.4612 17 8 1.5539 -4.5858 2.8897 18 6 2.8162 -4.6693 4.8820 19 6 1.6526 -5.5383 5.3633 20 6 1.9079 -5.9791 6.8060 21 7 0.7940 -6.8117 7.2667 22 6 -0.3058 -6.3325 7.8808 23 8 -0.5505 -5.1753 8.1465 24 6 -1.1732 -7.5416 8.1701 25 7 -0.3840 -8.6681 7.6424 26 6 0.7454 -8.1422 7.1349 27 8 1.6243 -8.8023 6.6162 28 1 -0.3634 0.0755 1.0248 29 1 -0.3633 0.8499 -0.5778 30 1 -0.3634 -0.9253 -0.4471 31 1 -0.0464 3.0776 1.4126 32 1 3.1498 -1.1386 -0.5133 33 1 1.6083 -2.0286 -0.5130 34 1 1.5000 -1.8398 1.9571 35 1 3.0415 -0.9499 1.9568 36 1 4.1704 -2.9040 0.9302 37 1 2.6293 -3.7945 0.9302 38 1 5.4707 -3.7668 3.3445 39 1 5.0003 -2.0635 3.1308 40 1 4.4870 -2.9529 4.5847 41 1 2.9023 -3.7905 5.5210 42 1 3.7414 -5.2438 4.9277 43 1 0.7271 -4.9642 5.3176 44 1 1.5668 -6.4172 4.7243 45 1 2.8334 -6.5532 6.8521 46 1 1.9934 -5.1001 7.4448 47 1 -2.1282 -7.4655 7.6501 48 1 -1.3298 -7.6525 9.2431 49 1 -0.6309 -9.6060 7.6576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717214972.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:30 Heat of formation + Delta-G solvation = -84.453739 kcal Electronic energy + Delta-G solvation = -29430.773713 eV Core-core repulsion = 25200.608922 eV Total energy + Delta-G solvation = -4230.164791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.31409 -40.98022 -39.67009 -38.00132 -37.19283 -36.89517 -36.53614 -34.30071 -33.67357 -31.99670 -29.17166 -28.38790 -28.04287 -27.80666 -26.48176 -24.39508 -23.86841 -23.05869 -21.95009 -21.37387 -20.07199 -19.06739 -18.77840 -18.20431 -18.01194 -17.64795 -17.28961 -16.93618 -16.72623 -16.36556 -16.26467 -15.81410 -15.60701 -15.31302 -15.26222 -15.00736 -14.83097 -14.67716 -14.44080 -14.17000 -13.94206 -13.54113 -13.30875 -13.24211 -13.13793 -12.95965 -12.80064 -12.68713 -12.53952 -12.47046 -12.27972 -12.07273 -12.03835 -11.91454 -11.87753 -11.42655 -11.33736 -11.00474 -10.81265 -10.64456 -10.41984 -9.67054 -8.80289 -7.82757 -5.31909 0.60734 1.19211 1.45541 1.49092 1.55719 1.63274 1.91056 2.10374 2.28236 2.51251 3.05346 3.31198 3.50112 3.68312 3.72224 3.83487 4.02003 4.07943 4.22056 4.30550 4.31693 4.37630 4.39464 4.42811 4.52196 4.57673 4.58708 4.64754 4.69114 4.74843 4.78886 4.83044 4.88968 4.97248 5.00987 5.15166 5.24829 5.26279 5.42132 5.60505 5.62451 5.66637 5.83568 6.02385 6.32167 6.37423 6.43675 7.09834 7.13164 7.19271 7.85335 8.31574 9.21743 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015865 B = 0.001995 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.440600 B =14033.386239 C =14734.385733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.622 5.622 3 C -0.260 4.260 4 H 0.077 0.923 5 C -0.061 4.061 6 N -0.945 5.945 7 Si 0.975 3.025 8 H -0.277 1.277 9 H -0.297 1.297 10 H -0.271 1.271 11 C 0.151 3.849 12 C -0.128 4.128 13 C 0.125 3.875 14 N -0.617 5.617 15 C 0.069 3.931 16 C 0.498 3.502 17 O -0.593 6.593 18 C -0.125 4.125 19 C -0.112 4.112 20 C 0.120 3.880 21 N -0.582 5.582 22 C 0.511 3.489 23 O -0.504 6.504 24 C 0.073 3.927 25 N -0.710 5.710 26 C 0.695 3.305 27 O -0.583 6.583 28 H -0.005 1.005 29 H 0.021 0.979 30 H 0.023 0.977 31 H 0.247 0.753 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.016 0.984 35 H 0.045 0.955 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.132 0.868 43 H 0.046 0.954 44 H 0.055 0.945 45 H 0.112 0.888 46 H 0.109 0.891 47 H 0.151 0.849 48 H 0.162 0.838 49 H 0.454 0.546 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.869 -23.522 17.692 29.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.345 5.345 3 C -0.390 4.390 4 H 0.095 0.905 5 C -0.255 4.255 6 N -0.592 5.592 7 Si 0.803 3.197 8 H -0.203 1.203 9 H -0.223 1.223 10 H -0.197 1.197 11 C 0.025 3.975 12 C -0.170 4.170 13 C 0.001 3.999 14 N -0.349 5.349 15 C -0.072 4.072 16 C 0.288 3.712 17 O -0.474 6.474 18 C -0.165 4.165 19 C -0.151 4.151 20 C -0.001 4.001 21 N -0.328 5.328 22 C 0.301 3.699 23 O -0.376 6.376 24 C -0.053 4.053 25 N -0.376 5.376 26 C 0.395 3.605 27 O -0.460 6.460 28 H 0.014 0.986 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.064 0.936 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.138 0.862 42 H 0.150 0.850 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.130 0.870 46 H 0.128 0.872 47 H 0.168 0.832 48 H 0.179 0.821 49 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 4.656 -23.226 17.297 29.331 hybrid contribution -0.312 0.962 -0.250 1.042 sum 4.345 -22.264 17.047 28.375 Atomic orbital electron populations 1.20494 0.83272 0.95703 0.97108 1.44255 1.02013 1.02122 1.86120 1.19570 0.98279 0.86353 1.34820 0.90483 1.25917 0.98530 1.02285 0.98811 1.70271 1.19513 1.27502 1.41911 0.85225 0.77669 0.78945 0.77909 1.20283 1.22334 1.19673 1.20929 0.96139 0.86518 0.93910 1.22285 0.98279 0.96478 0.99940 1.21403 1.01032 0.94861 0.82594 1.48094 1.22437 1.49872 1.14523 1.22118 0.85196 1.01405 0.98509 1.21410 0.82208 0.77589 0.89954 1.90681 1.29167 1.58098 1.69446 1.21606 1.01210 1.02388 0.91274 1.21523 0.98356 0.99482 0.95708 1.21762 0.88280 0.95404 0.94638 1.46502 1.22134 1.08669 1.55446 1.21669 0.82100 0.90873 0.75306 1.90847 1.74592 1.20069 1.52048 1.22713 0.96031 0.80801 1.05793 1.45405 1.18582 1.11196 1.62380 1.16066 0.83858 0.81466 0.79093 1.91000 1.42052 1.63415 1.49513 0.98637 0.96015 0.95887 0.94415 0.91982 0.93337 0.96487 0.93618 0.87857 0.91633 0.89795 0.90931 0.88960 0.86231 0.85049 0.93503 0.92626 0.87001 0.87241 0.83165 0.82080 0.69857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.78 9.01 127.77 1.15 10.93 16 2 N -0.62 -33.24 2.93 -726.94 -2.13 -35.36 16 3 C -0.26 -14.67 9.67 84.03 0.81 -13.86 16 4 H 0.08 4.10 7.84 -2.91 -0.02 4.08 16 5 C -0.06 -3.54 5.13 84.86 0.44 -3.10 16 6 N -0.94 -58.53 10.58 21.65 0.23 -58.30 16 7 Si 0.97 45.89 29.57 68.60 2.03 47.91 16 8 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 9 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 C 0.15 6.44 5.71 86.38 0.49 6.93 16 12 C -0.13 -5.13 5.86 30.60 0.18 -4.95 16 13 C 0.12 3.77 5.41 86.38 0.47 4.24 16 14 N -0.62 -16.23 2.87 -846.75 -2.43 -18.67 16 15 C 0.07 1.12 10.24 127.77 1.31 2.43 16 16 C 0.50 14.61 7.67 87.66 0.67 15.29 16 17 O -0.59 -23.56 15.56 -3.02 -0.05 -23.61 16 18 C -0.12 -2.30 4.25 29.85 0.13 -2.17 16 19 C -0.11 -2.44 4.83 30.59 0.15 -2.29 16 20 C 0.12 1.93 5.70 86.38 0.49 2.42 16 21 N -0.58 -9.85 2.60 -773.13 -2.01 -11.87 16 22 C 0.51 7.89 8.32 87.94 0.73 8.62 16 23 O -0.50 -11.63 17.75 -2.86 -0.05 -11.68 16 24 C 0.07 0.32 7.97 85.76 0.68 1.00 16 25 N -0.71 -5.38 6.58 -480.29 -3.16 -8.54 16 26 C 0.69 12.02 8.62 179.44 1.55 13.57 16 27 O -0.58 -14.66 17.48 -3.85 -0.07 -14.73 16 28 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 29 H 0.02 1.23 7.19 -2.39 -0.02 1.22 16 30 H 0.02 1.09 7.84 -2.39 -0.02 1.07 16 31 H 0.25 14.86 8.31 -92.71 -0.77 14.08 16 32 H 0.06 2.39 8.03 -2.39 -0.02 2.37 16 33 H 0.05 1.94 7.86 -2.38 -0.02 1.92 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.10 2.49 8.07 -2.39 -0.02 2.47 16 37 H 0.07 2.17 7.42 -2.39 -0.02 2.15 16 38 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.07 1.27 8.07 -2.39 -0.02 1.25 16 40 H 0.09 1.09 6.44 -2.38 -0.02 1.07 16 41 H 0.12 1.70 7.40 -2.39 -0.02 1.68 16 42 H 0.13 1.51 8.11 -2.39 -0.02 1.49 16 43 H 0.05 1.30 8.10 -2.38 -0.02 1.28 16 44 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 45 H 0.11 1.49 7.86 -2.38 -0.02 1.47 16 46 H 0.11 1.48 8.00 -2.39 -0.02 1.46 16 47 H 0.15 0.07 8.14 -2.38 -0.02 0.05 16 48 H 0.16 -0.35 8.14 -2.39 -0.02 -0.37 16 49 H 0.45 1.12 8.96 -92.71 -0.83 0.29 16 Total: -1.00 -90.44 407.40 1.73 -88.71 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.12 Total: 7.06 kcal Atomic # 6 Polarization: 29.81 SS G_CDS: 9.25 Total: 39.06 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -9.51 Total: -132.73 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -0.17 Total: -50.01 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -90.44 1.73 -88.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717214972.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.257 kcal (2) G-P(sol) polarization free energy of solvation -90.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds