Wall clock time and date at job start Sat Apr 11 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21283 * 120.00236 * 2 1 4 4 N 1.34771 * 120.00147 * 179.97438 * 2 1 3 5 5 C 1.46501 * 120.00308 * 180.02562 * 4 2 1 6 6 C 1.50705 * 109.47054 * 180.02562 * 5 4 2 7 7 O 1.21275 * 119.99890 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99828 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99865 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47120 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99575 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00335 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99594 * 0.02562 * 12 10 9 14 14 C 1.46501 * 120.00308 * 180.02562 * 12 10 9 15 15 H 1.09000 * 109.46894 * 0.02562 * 14 12 10 16 16 C 1.52998 * 109.46930 * 240.00162 * 14 12 10 17 17 N 1.46497 * 109.47175 * 54.99916 * 16 14 12 18 18 C 1.36938 * 119.99875 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00080 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00086 * 180.02562 * 18 17 16 21 21 N 1.31612 * 119.99914 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00077 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47122 * 89.99700 * 22 20 18 24 24 H 1.48505 * 109.47152 * 209.99875 * 22 20 18 25 25 H 1.48506 * 109.47210 * 329.99711 * 22 20 18 26 26 C 1.52993 * 109.47004 * 120.00028 * 14 12 10 27 27 C 1.53003 * 117.49988 * 248.74516 * 26 14 12 28 28 C 1.53004 * 117.49817 * 180.08937 * 26 14 12 29 29 H 1.09002 * 109.47197 * 270.00786 * 1 2 3 30 30 H 1.09000 * 109.46994 * 30.00367 * 1 2 3 31 31 H 1.08999 * 109.47405 * 150.00194 * 1 2 3 32 32 H 0.97000 * 119.99968 * 359.97438 * 4 2 1 33 33 H 1.09000 * 109.47410 * 60.00072 * 5 4 2 34 34 H 1.08996 * 109.46848 * 299.99830 * 5 4 2 35 35 H 0.96999 * 120.00154 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.47136 * 59.99406 * 9 8 6 37 37 H 1.08996 * 109.46933 * 299.99280 * 9 8 6 38 38 H 1.09001 * 109.47060 * 90.00388 * 13 12 10 39 39 H 1.09004 * 109.47073 * 209.99877 * 13 12 10 40 40 H 1.09000 * 109.47212 * 329.99960 * 13 12 10 41 41 H 1.09003 * 109.47292 * 175.00032 * 16 14 12 42 42 H 1.09000 * 109.47028 * 294.99614 * 16 14 12 43 43 H 0.97000 * 120.00199 * 359.97438 * 17 16 14 44 44 H 0.97004 * 120.00488 * 180.02562 * 21 20 18 45 45 H 1.09006 * 115.55680 * 34.41872 * 26 14 12 46 46 H 1.09001 * 117.49612 * 0.02562 * 27 26 14 47 47 H 1.08999 * 117.49835 * 145.02549 * 27 26 14 48 48 H 1.09009 * 117.49742 * 214.98163 * 28 26 14 49 49 H 1.09000 * 117.49727 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1671 0.0005 5 6 3.6458 -1.1672 0.0011 6 6 4.1481 -2.5881 0.0010 7 8 3.3600 -3.5098 0.0009 8 7 5.4732 -2.8343 0.0019 9 6 5.9615 -4.2156 0.0013 10 6 7.4685 -4.2156 0.0020 11 8 8.0749 -3.1653 0.0034 12 7 8.1424 -5.3828 0.0020 13 6 7.4098 -6.6515 0.0008 14 6 9.6074 -5.3828 0.0033 15 1 9.9708 -4.3551 0.0045 16 6 10.1184 -6.1035 -1.2459 17 7 9.5353 -5.4853 -2.4392 18 6 9.8494 -5.9662 -3.6823 19 1 10.5273 -6.8009 -3.7830 20 6 9.2973 -5.3801 -4.8131 21 7 8.4715 -4.3627 -4.6904 22 14 9.7263 -6.0356 -6.5088 23 1 8.7582 -7.0956 -6.8893 24 1 9.6631 -4.9295 -7.4977 25 1 11.0985 -6.6030 -6.4877 26 6 10.1163 -6.1046 1.2526 27 6 10.8147 -5.2608 2.3208 28 6 11.6312 -6.2097 1.4400 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6958 -2.0072 0.0013 33 1 4.0089 -0.6532 0.8911 34 1 4.0095 -0.6536 -0.8889 35 1 6.1036 -2.0971 0.0024 36 1 5.5989 -4.7287 -0.8894 37 1 5.5975 -4.7300 0.8905 38 1 7.2291 -6.9657 -1.0271 39 1 7.9985 -7.4114 0.5148 40 1 6.4570 -6.5214 0.5139 41 1 11.2048 -6.0266 -1.2909 42 1 9.8300 -7.1538 -1.2029 43 1 8.9261 -4.7359 -2.3487 44 1 8.0854 -3.9533 -5.4805 45 1 9.5079 -6.9430 1.5919 46 1 10.9113 -4.1913 2.1337 47 1 10.6661 -5.5442 3.3627 48 1 12.0193 -7.1172 1.9028 49 1 12.2652 -5.7650 0.6729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717731455.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:32 Heat of formation + Delta-G solvation = -90.580418 kcal Electronic energy + Delta-G solvation = -29926.963994 eV Core-core repulsion = 25696.533531 eV Total energy + Delta-G solvation = -4230.430464 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.63156 -41.00035 -40.09867 -38.83128 -36.61832 -35.83934 -35.78951 -35.43383 -33.22320 -31.62112 -30.51490 -29.17592 -27.79618 -27.09364 -25.82652 -23.77121 -22.88674 -21.87829 -21.66893 -21.55043 -20.32399 -19.16506 -19.07326 -18.23361 -17.73448 -17.42920 -17.35431 -16.83887 -16.76728 -16.52081 -16.35171 -15.98517 -15.57937 -15.39104 -15.13057 -14.87293 -14.78703 -14.42466 -14.24350 -14.10465 -13.88003 -13.70381 -13.46171 -13.31129 -13.18422 -13.04670 -12.92104 -12.89534 -12.73075 -12.39162 -12.21594 -12.11711 -11.79351 -11.36106 -11.29284 -11.10507 -11.04344 -10.91131 -10.86299 -10.41804 -10.23855 -9.63402 -9.00723 -7.95083 -5.24302 1.33068 1.45099 1.46075 1.47001 1.54732 1.55201 1.59179 2.04339 2.46599 2.53880 2.90493 3.36137 3.38432 3.50566 3.62949 3.93378 3.99269 4.06268 4.13718 4.15542 4.23210 4.31627 4.32073 4.32844 4.37210 4.44816 4.54581 4.55731 4.68517 4.73349 4.80592 4.89058 4.97667 5.04760 5.05948 5.06607 5.11140 5.24324 5.26427 5.30264 5.47029 5.58798 6.24608 6.25667 6.32516 6.46904 6.90811 7.03829 7.16023 7.32001 8.07741 8.30857 9.27608 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008649 B = 0.002880 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.547570 B = 9719.912769 C =12155.987171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.507 3.493 3 O -0.597 6.597 4 N -0.714 5.714 5 C 0.101 3.899 6 C 0.519 3.481 7 O -0.563 6.563 8 N -0.708 5.708 9 C 0.111 3.889 10 C 0.507 3.493 11 O -0.575 6.575 12 N -0.588 5.588 13 C 0.071 3.929 14 C 0.171 3.829 15 H 0.069 0.931 16 C 0.148 3.852 17 N -0.740 5.740 18 C -0.242 4.242 19 H 0.077 0.923 20 C -0.075 4.075 21 N -0.967 5.967 22 Si 0.972 3.028 23 H -0.285 1.285 24 H -0.300 1.300 25 H -0.270 1.270 26 C -0.164 4.164 27 C -0.171 4.171 28 C -0.164 4.164 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.419 0.581 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.416 0.584 36 H 0.095 0.905 37 H 0.126 0.874 38 H 0.045 0.955 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.028 0.972 42 H 0.036 0.964 43 H 0.371 0.629 44 H 0.248 0.752 45 H 0.130 0.870 46 H 0.078 0.922 47 H 0.115 0.885 48 H 0.119 0.881 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.093 -2.295 17.645 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.297 3.703 3 O -0.478 6.478 4 N -0.370 5.370 5 C -0.027 4.027 6 C 0.306 3.694 7 O -0.442 6.442 8 N -0.362 5.362 9 C -0.016 4.016 10 C 0.295 3.705 11 O -0.456 6.456 12 N -0.318 5.318 13 C -0.071 4.071 14 C 0.067 3.933 15 H 0.087 0.913 16 C 0.021 3.979 17 N -0.383 5.383 18 C -0.373 4.373 19 H 0.095 0.905 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.801 3.199 23 H -0.212 1.212 24 H -0.226 1.226 25 H -0.194 1.194 26 C -0.183 4.183 27 C -0.208 4.208 28 C -0.202 4.202 29 H 0.133 0.867 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.258 0.742 33 H 0.130 0.870 34 H 0.119 0.881 35 H 0.255 0.745 36 H 0.112 0.888 37 H 0.143 0.857 38 H 0.064 0.936 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.203 0.797 44 H 0.057 0.943 45 H 0.147 0.853 46 H 0.096 0.904 47 H 0.133 0.867 48 H 0.138 0.862 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.784 -1.838 17.528 20.157 hybrid contribution 0.405 0.140 -1.475 1.536 sum -9.379 -1.698 16.053 18.669 Atomic orbital electron populations 1.21896 0.87507 1.06282 1.06508 1.21653 0.92484 0.82156 0.74030 1.90723 1.72080 1.32968 1.52051 1.45868 1.05632 1.10365 1.75087 1.21019 0.83048 0.92795 1.05805 1.20611 0.81888 0.91601 0.75298 1.90675 1.55521 1.46641 1.51398 1.45622 1.07366 1.08961 1.74285 1.21102 0.89862 0.85074 1.05520 1.20749 0.90458 0.83733 0.75551 1.90665 1.70545 1.32187 1.52179 1.47593 1.06354 1.06652 1.71245 1.22039 0.97794 0.84862 1.02410 1.20702 0.79299 0.99637 0.93680 0.91256 1.21095 0.95766 0.95771 0.85286 1.42478 1.55349 1.39045 1.01422 1.19608 1.21418 1.11505 0.84816 0.90492 1.25546 1.00581 0.99065 1.01497 1.69844 1.36362 1.26728 1.28831 0.85163 0.78100 0.76773 0.79841 1.21219 1.22646 1.19443 1.22449 0.96597 1.02822 0.96420 1.23044 1.03879 0.96996 0.96871 1.23014 0.92216 1.02436 1.02515 0.86741 0.88498 0.87775 0.74187 0.86953 0.88142 0.74549 0.88753 0.85666 0.93597 0.88457 0.88343 0.95438 0.94644 0.79690 0.94293 0.85270 0.90361 0.86709 0.86249 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 10.30 71.23 0.73 -0.95 16 2 C 0.51 10.28 7.94 87.66 0.70 10.98 16 3 O -0.60 -17.68 17.10 -3.04 -0.05 -17.74 16 4 N -0.71 -13.61 5.53 -466.80 -2.58 -16.19 16 5 C 0.10 2.10 6.15 85.63 0.53 2.63 16 6 C 0.52 12.61 7.90 87.66 0.69 13.30 16 7 O -0.56 -15.77 15.67 -3.01 -0.05 -15.81 16 8 N -0.71 -18.11 5.53 -466.79 -2.58 -20.69 16 9 C 0.11 2.92 4.71 85.63 0.40 3.33 16 10 C 0.51 16.45 7.45 87.66 0.65 17.10 16 11 O -0.58 -22.71 14.99 -3.04 -0.05 -22.75 16 12 N -0.59 -17.43 2.24 -822.58 -1.85 -19.27 16 13 C 0.07 1.58 9.38 127.77 1.20 2.78 16 14 C 0.17 5.45 2.42 44.99 0.11 5.56 16 15 H 0.07 2.68 6.66 -2.39 -0.02 2.66 16 16 C 0.15 5.69 5.32 86.38 0.46 6.15 16 17 N -0.74 -37.48 5.43 -343.45 -1.87 -39.35 16 18 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16 19 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 21 N -0.97 -60.05 13.06 21.65 0.28 -59.76 16 22 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 23 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 24 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 C -0.16 -3.71 5.15 -10.79 -0.06 -3.76 16 27 C -0.17 -3.52 10.18 30.62 0.31 -3.20 16 28 C -0.16 -3.35 9.80 30.62 0.30 -3.05 16 29 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.42 6.98 7.44 -92.71 -0.69 6.29 16 33 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 35 H 0.42 10.82 7.44 -92.71 -0.69 10.13 16 36 H 0.09 2.71 8.11 -2.39 -0.02 2.69 16 37 H 0.13 2.53 7.40 -2.39 -0.02 2.51 16 38 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 39 H 0.10 1.69 6.43 -2.38 -0.02 1.67 16 40 H 0.10 1.57 6.44 -2.39 -0.02 1.56 16 41 H 0.03 1.08 7.48 -2.39 -0.02 1.06 16 42 H 0.04 1.29 7.84 -2.39 -0.02 1.27 16 43 H 0.37 20.69 7.06 -92.71 -0.65 20.04 16 44 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 45 H 0.13 2.35 6.59 -2.38 -0.02 2.33 16 46 H 0.08 1.89 8.05 -2.39 -0.02 1.87 16 47 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 49 H 0.08 1.98 7.67 -2.39 -0.02 1.96 16 Total: -1.00 -80.27 408.47 -0.41 -80.68 By element: Atomic # 1 Polarization: 49.05 SS G_CDS: -1.04 Total: 48.02 kcal Atomic # 6 Polarization: 27.11 SS G_CDS: 7.33 Total: 34.44 kcal Atomic # 7 Polarization: -146.67 SS G_CDS: -8.59 Total: -155.26 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -0.14 Total: -56.30 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -80.27 -0.41 -80.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717731455.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.905 kcal (2) G-P(sol) polarization free energy of solvation -80.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds