Wall clock time and date at job start Sat Apr 11 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21279 * 120.00117 * 2 1 4 4 N 1.34774 * 119.99948 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99962 * 180.02562 * 4 2 1 6 6 C 1.50707 * 109.47351 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99521 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99918 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99778 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.46874 * 180.02562 * 9 8 6 11 11 O 1.21274 * 120.00413 * 0.27298 * 10 9 8 12 12 N 1.34784 * 119.99635 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99893 * 0.02562 * 12 10 9 14 14 C 1.46499 * 119.99971 * 179.97438 * 12 10 9 15 15 H 1.09004 * 109.46973 * 359.97438 * 14 12 10 16 16 C 1.52996 * 109.47349 * 119.99826 * 14 12 10 17 17 N 1.46506 * 109.46890 * 305.00352 * 16 14 12 18 18 C 1.36943 * 119.99624 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00086 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99663 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00157 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99774 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47357 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47320 * 120.00083 * 22 20 18 25 25 H 1.48503 * 109.47221 * 240.00011 * 22 20 18 26 26 C 1.52998 * 109.47194 * 240.00124 * 14 12 10 27 27 C 1.52997 * 117.49694 * 248.74390 * 26 14 12 28 28 C 1.53005 * 117.49737 * 180.08693 * 26 14 12 29 29 H 1.08993 * 109.47710 * 270.00211 * 1 2 3 30 30 H 1.08994 * 109.47027 * 30.01100 * 1 2 3 31 31 H 1.09010 * 109.46866 * 150.00621 * 1 2 3 32 32 H 0.97004 * 120.00570 * 0.02562 * 4 2 1 33 33 H 1.08997 * 109.47290 * 60.00137 * 5 4 2 34 34 H 1.09002 * 109.47352 * 300.00388 * 5 4 2 35 35 H 0.97000 * 120.00556 * 0.02562 * 8 6 5 36 36 H 1.09005 * 109.46943 * 60.00092 * 9 8 6 37 37 H 1.09002 * 109.47064 * 300.00355 * 9 8 6 38 38 H 1.08996 * 109.47008 * 90.00348 * 13 12 10 39 39 H 1.08997 * 109.46865 * 210.00034 * 13 12 10 40 40 H 1.08998 * 109.47058 * 329.99547 * 13 12 10 41 41 H 1.09006 * 109.46900 * 64.99945 * 16 14 12 42 42 H 1.09004 * 109.47581 * 185.00180 * 16 14 12 43 43 H 0.96995 * 120.00242 * 359.97438 * 17 16 14 44 44 H 0.96995 * 120.00321 * 180.02562 * 21 20 18 45 45 H 1.09002 * 115.55183 * 34.41659 * 26 14 12 46 46 H 1.08997 * 117.50093 * 0.02562 * 27 26 14 47 47 H 1.09008 * 117.49588 * 145.01798 * 27 26 14 48 48 H 1.08998 * 117.49583 * 214.97651 * 28 26 14 49 49 H 1.08998 * 117.49890 * 359.97273 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1483 -2.5881 0.0010 7 8 3.3601 -3.5099 0.0009 8 7 5.4733 -2.8343 0.0019 9 6 5.9617 -4.2155 0.0024 10 6 7.4686 -4.2154 0.0041 11 8 8.0750 -3.1652 0.0099 12 7 8.1426 -5.3827 0.0043 13 6 7.4100 -6.6514 0.0022 14 6 9.6075 -5.3827 0.0054 15 1 9.9709 -4.3550 0.0055 16 6 10.1166 -6.1043 1.2548 17 7 9.5315 -5.4870 2.4477 18 6 9.8437 -5.9688 3.6910 19 1 10.5215 -6.8035 3.7921 20 6 9.2897 -5.3836 4.8212 21 7 8.4648 -4.3654 4.6980 22 14 9.7160 -6.0403 6.5172 23 1 10.6592 -7.1797 6.3842 24 1 10.3508 -4.9640 7.3196 25 1 8.4775 -6.4990 7.1962 26 6 10.1185 -6.1035 -1.2437 27 6 10.8177 -7.4500 -1.0459 28 6 11.6337 -6.2121 -1.4265 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8898 -0.5140 31 1 -0.3633 -0.8901 -0.5138 32 1 1.6959 -2.0073 0.0005 33 1 4.0089 -0.6532 0.8911 34 1 4.0096 -0.6535 -0.8888 35 1 6.1037 -2.0970 0.0031 36 1 5.5990 -4.7294 -0.8879 37 1 5.5976 -4.7293 0.8921 38 1 7.2300 -6.9653 -1.0259 39 1 7.9983 -7.4114 0.5164 40 1 6.4569 -6.5214 0.5147 41 1 9.8283 -7.1546 1.2106 42 1 11.2029 -6.0274 1.3016 43 1 8.9230 -4.7371 2.3568 44 1 8.0780 -3.9563 5.4878 45 1 9.5110 -5.9787 -2.1401 46 1 10.9133 -7.8224 -0.0260 47 1 10.6704 -8.2109 -1.8124 48 1 12.0230 -6.1591 -2.4432 49 1 12.2664 -5.7696 -0.6572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717731456.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:36 Heat of formation + Delta-G solvation = -58.561144 kcal Electronic energy + Delta-G solvation = -29962.566357 eV Core-core repulsion = 25733.524353 eV Total energy + Delta-G solvation = -4229.042004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.54003 -39.96593 -39.13347 -37.87578 -35.16733 -34.81430 -34.42469 -34.09190 -31.29374 -30.82706 -29.24465 -27.96302 -26.69090 -25.91589 -24.23387 -22.60960 -21.97971 -20.91330 -20.78765 -20.28630 -18.72908 -18.08083 -17.17715 -16.99088 -16.78210 -16.36050 -16.33748 -15.86032 -15.71270 -15.42313 -14.99387 -14.67612 -14.47607 -14.22855 -13.91062 -13.54619 -13.34097 -13.20464 -12.98871 -12.94892 -12.85330 -12.84950 -12.46418 -12.27019 -12.15987 -12.03236 -11.58492 -11.35557 -11.10721 -10.85126 -10.79101 -10.42308 -10.24654 -10.21192 -10.10281 -9.87586 -9.75420 -9.59826 -9.46292 -9.26956 -8.91699 -8.42097 -6.95678 -5.78782 -3.08388 2.32572 2.41264 2.49745 2.73986 3.05128 3.39432 3.40758 3.45990 3.48562 3.91456 4.42340 4.50043 4.56569 4.63062 4.80719 4.94226 5.01081 5.03558 5.06902 5.14032 5.18249 5.22421 5.24424 5.32381 5.47155 5.51233 5.53189 5.55795 5.70717 5.77272 5.86862 5.87880 5.96186 6.03061 6.13239 6.20183 6.21444 6.31368 6.39364 6.60424 6.82912 7.23316 7.28718 7.52415 7.66053 7.92722 7.96243 8.26787 8.38552 9.50521 10.07463 10.42638 11.43293 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009159 B = 0.002812 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.488870 B = 9954.005003 C =12247.087336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.512 3.488 3 O -0.549 6.549 4 N -0.718 5.718 5 C 0.099 3.901 6 C 0.514 3.486 7 O -0.544 6.544 8 N -0.706 5.706 9 C 0.104 3.896 10 C 0.514 3.486 11 O -0.537 6.537 12 N -0.587 5.587 13 C 0.079 3.921 14 C 0.161 3.839 15 H 0.105 0.895 16 C 0.143 3.857 17 N -0.727 5.727 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.928 5.928 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.158 4.158 27 C -0.183 4.183 28 C -0.173 4.173 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.413 0.587 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.416 0.584 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.027 0.973 42 H 0.029 0.971 43 H 0.385 0.615 44 H 0.254 0.746 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.524 -0.802 -15.666 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.299 3.701 3 O -0.426 6.426 4 N -0.375 5.375 5 C -0.028 4.028 6 C 0.299 3.701 7 O -0.422 6.422 8 N -0.361 5.361 9 C -0.023 4.023 10 C 0.301 3.699 11 O -0.414 6.414 12 N -0.319 5.319 13 C -0.064 4.064 14 C 0.058 3.942 15 H 0.123 0.877 16 C 0.014 3.986 17 N -0.372 5.372 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.576 5.576 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.178 4.178 27 C -0.220 4.220 28 C -0.211 4.211 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.251 0.749 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.255 0.745 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.121 0.879 46 H 0.125 0.875 47 H 0.108 0.892 48 H 0.110 0.890 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.234 -0.272 -15.521 18.062 hybrid contribution 0.174 -0.382 1.051 1.132 sum -9.060 -0.654 -14.469 17.084 Atomic orbital electron populations 1.21858 0.91139 1.04969 1.05028 1.20839 0.90782 0.83024 0.75435 1.90744 1.70792 1.31405 1.49688 1.45823 1.05956 1.10011 1.75676 1.21038 0.82374 0.94061 1.05373 1.20416 0.82378 0.91176 0.76109 1.90693 1.55190 1.45894 1.50375 1.45571 1.07101 1.09096 1.74344 1.21132 0.91888 0.84521 1.04788 1.20290 0.89383 0.84022 0.76221 1.90691 1.69591 1.30839 1.50306 1.47500 1.06599 1.05757 1.72064 1.21785 0.97361 0.86290 1.01002 1.20878 0.78434 1.01642 0.93254 0.87717 1.21122 0.96090 0.95346 0.86022 1.42296 1.55320 1.39215 1.00345 1.19224 1.22419 1.12042 0.83604 0.91227 1.24741 0.99887 0.98351 0.97786 1.69679 1.34614 1.24986 1.28339 0.86146 0.77449 0.77928 0.84796 1.20605 1.21865 1.21889 1.22556 0.95337 1.00547 0.99365 1.23198 1.04299 0.91047 1.03438 1.22960 0.93225 1.02367 1.02503 0.88627 0.88751 0.89998 0.74934 0.87834 0.88097 0.74550 0.88528 0.87700 0.92893 0.89965 0.91089 0.95525 0.95355 0.78070 0.93577 0.87929 0.87475 0.89243 0.89031 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.30 36.01 0.37 -0.67 16 2 C 0.51 5.35 7.94 -10.99 -0.09 5.26 16 3 O -0.55 -8.04 17.10 5.56 0.10 -7.94 16 4 N -0.72 -7.09 5.53 -61.47 -0.34 -7.43 16 5 C 0.10 1.03 6.15 -5.19 -0.03 1.00 16 6 C 0.51 6.31 7.90 -10.98 -0.09 6.22 16 7 O -0.54 -7.83 15.67 5.56 0.09 -7.74 16 8 N -0.71 -8.97 5.53 -61.47 -0.34 -9.31 16 9 C 0.10 1.38 4.71 -5.19 -0.02 1.35 16 10 C 0.51 8.22 7.45 -10.98 -0.08 8.14 16 11 O -0.54 -10.19 14.99 5.56 0.08 -10.11 16 12 N -0.59 -8.83 2.24 -173.94 -0.39 -9.22 16 13 C 0.08 0.96 9.61 59.85 0.58 1.53 16 14 C 0.16 2.58 2.59 -67.93 -0.18 2.41 16 15 H 0.10 1.95 6.90 -51.93 -0.36 1.59 16 16 C 0.14 2.70 4.14 -4.04 -0.02 2.68 16 17 N -0.73 -17.95 5.43 -59.90 -0.33 -18.27 16 18 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 C -0.16 -1.97 5.48 -90.62 -0.50 -2.47 16 27 C -0.18 -2.05 9.59 -26.70 -0.26 -2.31 16 28 C -0.17 -1.97 9.94 -26.69 -0.27 -2.23 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.41 3.67 7.44 -40.82 -0.30 3.37 16 33 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.42 5.22 7.44 -40.82 -0.30 4.92 16 36 H 0.10 1.08 8.11 -51.93 -0.42 0.65 16 37 H 0.11 1.50 7.40 -51.93 -0.38 1.11 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 1.08 6.53 -51.93 -0.34 0.74 16 40 H 0.07 0.83 6.44 -51.93 -0.33 0.49 16 41 H 0.03 0.49 5.34 -51.93 -0.28 0.21 16 42 H 0.03 0.55 7.44 -51.93 -0.39 0.17 16 43 H 0.39 10.33 7.06 -40.82 -0.29 10.04 16 44 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.11 1.33 5.80 -51.93 -0.30 1.03 16 47 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 48 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 49 H 0.10 1.20 7.66 -51.93 -0.40 0.80 16 LS Contribution 404.69 15.07 6.10 6.10 Total: -1.00 -35.82 404.69 -7.60 -43.42 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -7.45 Total: 16.79 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: -0.82 Total: 13.73 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -0.67 Total: -71.50 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: 0.27 Total: -25.80 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.82 -7.60 -43.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717731456.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.137 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds