Wall clock time and date at job start Sat Apr 11 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21279 * 120.00117 * 2 1 4 4 N 1.34774 * 119.99948 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99962 * 180.02562 * 4 2 1 6 6 C 1.50707 * 109.47351 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99521 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99918 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99778 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.46874 * 180.02562 * 9 8 6 11 11 O 1.21274 * 120.00413 * 0.27298 * 10 9 8 12 12 N 1.34784 * 119.99635 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99893 * 0.02562 * 12 10 9 14 14 C 1.46499 * 119.99971 * 179.97438 * 12 10 9 15 15 H 1.09004 * 109.46973 * 359.97438 * 14 12 10 16 16 C 1.52996 * 109.47349 * 119.99826 * 14 12 10 17 17 N 1.46506 * 109.46890 * 305.00352 * 16 14 12 18 18 C 1.36943 * 119.99624 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00086 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99663 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00157 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99774 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47357 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47320 * 120.00083 * 22 20 18 25 25 H 1.48503 * 109.47221 * 240.00011 * 22 20 18 26 26 C 1.52998 * 109.47194 * 240.00124 * 14 12 10 27 27 C 1.52997 * 117.49694 * 248.74390 * 26 14 12 28 28 C 1.53005 * 117.49737 * 180.08693 * 26 14 12 29 29 H 1.08993 * 109.47710 * 270.00211 * 1 2 3 30 30 H 1.08994 * 109.47027 * 30.01100 * 1 2 3 31 31 H 1.09010 * 109.46866 * 150.00621 * 1 2 3 32 32 H 0.97004 * 120.00570 * 0.02562 * 4 2 1 33 33 H 1.08997 * 109.47290 * 60.00137 * 5 4 2 34 34 H 1.09002 * 109.47352 * 300.00388 * 5 4 2 35 35 H 0.97000 * 120.00556 * 0.02562 * 8 6 5 36 36 H 1.09005 * 109.46943 * 60.00092 * 9 8 6 37 37 H 1.09002 * 109.47064 * 300.00355 * 9 8 6 38 38 H 1.08996 * 109.47008 * 90.00348 * 13 12 10 39 39 H 1.08997 * 109.46865 * 210.00034 * 13 12 10 40 40 H 1.08998 * 109.47058 * 329.99547 * 13 12 10 41 41 H 1.09006 * 109.46900 * 64.99945 * 16 14 12 42 42 H 1.09004 * 109.47581 * 185.00180 * 16 14 12 43 43 H 0.96995 * 120.00242 * 359.97438 * 17 16 14 44 44 H 0.96995 * 120.00321 * 180.02562 * 21 20 18 45 45 H 1.09002 * 115.55183 * 34.41659 * 26 14 12 46 46 H 1.08997 * 117.50093 * 0.02562 * 27 26 14 47 47 H 1.09008 * 117.49588 * 145.01798 * 27 26 14 48 48 H 1.08998 * 117.49583 * 214.97651 * 28 26 14 49 49 H 1.08998 * 117.49890 * 359.97273 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1483 -2.5881 0.0010 7 8 3.3601 -3.5099 0.0009 8 7 5.4733 -2.8343 0.0019 9 6 5.9617 -4.2155 0.0024 10 6 7.4686 -4.2154 0.0041 11 8 8.0750 -3.1652 0.0099 12 7 8.1426 -5.3827 0.0043 13 6 7.4100 -6.6514 0.0022 14 6 9.6075 -5.3827 0.0054 15 1 9.9709 -4.3550 0.0055 16 6 10.1166 -6.1043 1.2548 17 7 9.5315 -5.4870 2.4477 18 6 9.8437 -5.9688 3.6910 19 1 10.5215 -6.8035 3.7921 20 6 9.2897 -5.3836 4.8212 21 7 8.4648 -4.3654 4.6980 22 14 9.7160 -6.0403 6.5172 23 1 10.6592 -7.1797 6.3842 24 1 10.3508 -4.9640 7.3196 25 1 8.4775 -6.4990 7.1962 26 6 10.1185 -6.1035 -1.2437 27 6 10.8177 -7.4500 -1.0459 28 6 11.6337 -6.2121 -1.4265 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8898 -0.5140 31 1 -0.3633 -0.8901 -0.5138 32 1 1.6959 -2.0073 0.0005 33 1 4.0089 -0.6532 0.8911 34 1 4.0096 -0.6535 -0.8888 35 1 6.1037 -2.0970 0.0031 36 1 5.5990 -4.7294 -0.8879 37 1 5.5976 -4.7293 0.8921 38 1 7.2300 -6.9653 -1.0259 39 1 7.9983 -7.4114 0.5164 40 1 6.4569 -6.5214 0.5147 41 1 9.8283 -7.1546 1.2106 42 1 11.2029 -6.0274 1.3016 43 1 8.9230 -4.7371 2.3568 44 1 8.0780 -3.9563 5.4878 45 1 9.5110 -5.9787 -2.1401 46 1 10.9133 -7.8224 -0.0260 47 1 10.6704 -8.2109 -1.8124 48 1 12.0230 -6.1591 -2.4432 49 1 12.2664 -5.7696 -0.6572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717731456.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:35 Heat of formation + Delta-G solvation = -86.604501 kcal Electronic energy + Delta-G solvation = -29963.782408 eV Core-core repulsion = 25733.524353 eV Total energy + Delta-G solvation = -4230.258055 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.64739 -41.02570 -40.11852 -39.04402 -36.44887 -35.84023 -35.80958 -35.43397 -33.14044 -31.62198 -30.47072 -29.12166 -27.78424 -27.12777 -25.81027 -24.06216 -23.09564 -21.87267 -21.66462 -21.42203 -20.04769 -19.09338 -19.04978 -18.13528 -17.76203 -17.47328 -17.36232 -16.99956 -16.77756 -16.50698 -16.24196 -16.01035 -15.79438 -15.39464 -15.06709 -14.90324 -14.70986 -14.43372 -14.25124 -14.11338 -13.91007 -13.65965 -13.44724 -13.30594 -13.13651 -13.05777 -12.94206 -12.92206 -12.74802 -12.32586 -12.22372 -11.98413 -11.77700 -11.40519 -11.29430 -11.10570 -11.02574 -10.99115 -10.73781 -10.41750 -10.23785 -9.63504 -9.00837 -7.95605 -5.24823 1.33173 1.44828 1.45636 1.46566 1.54008 1.55596 1.59127 2.04512 2.46904 2.53546 2.94911 3.34165 3.38152 3.50866 3.69069 3.92592 3.94070 4.10321 4.14740 4.17497 4.23202 4.26093 4.27149 4.32683 4.37389 4.43901 4.54896 4.60920 4.68318 4.77428 4.83798 4.87827 4.98783 5.05768 5.06230 5.09993 5.13992 5.23957 5.24625 5.34544 5.47214 5.56829 6.24257 6.25789 6.32979 6.46942 6.90932 7.03561 7.16029 7.31672 8.07014 8.30114 9.27286 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009159 B = 0.002812 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.488870 B = 9954.005003 C =12247.087336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.507 3.493 3 O -0.597 6.597 4 N -0.714 5.714 5 C 0.101 3.899 6 C 0.519 3.481 7 O -0.563 6.563 8 N -0.708 5.708 9 C 0.112 3.888 10 C 0.506 3.494 11 O -0.575 6.575 12 N -0.588 5.588 13 C 0.074 3.926 14 C 0.169 3.831 15 H 0.072 0.928 16 C 0.144 3.856 17 N -0.740 5.740 18 C -0.241 4.241 19 H 0.078 0.922 20 C -0.074 4.074 21 N -0.966 5.966 22 Si 0.971 3.029 23 H -0.264 1.264 24 H -0.298 1.298 25 H -0.293 1.293 26 C -0.161 4.161 27 C -0.169 4.169 28 C -0.172 4.172 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.419 0.581 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.416 0.584 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.026 0.974 43 H 0.371 0.629 44 H 0.248 0.752 45 H 0.119 0.881 46 H 0.093 0.907 47 H 0.116 0.884 48 H 0.115 0.885 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.083 -2.806 -17.039 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.297 3.703 3 O -0.478 6.478 4 N -0.370 5.370 5 C -0.027 4.027 6 C 0.306 3.694 7 O -0.443 6.443 8 N -0.362 5.362 9 C -0.015 4.015 10 C 0.294 3.706 11 O -0.456 6.456 12 N -0.318 5.318 13 C -0.067 4.067 14 C 0.065 3.935 15 H 0.090 0.910 16 C 0.017 3.983 17 N -0.382 5.382 18 C -0.372 4.372 19 H 0.095 0.905 20 C -0.266 4.266 21 N -0.617 5.617 22 Si 0.801 3.199 23 H -0.188 1.188 24 H -0.226 1.226 25 H -0.220 1.220 26 C -0.180 4.180 27 C -0.206 4.206 28 C -0.209 4.209 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.258 0.742 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.255 0.745 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.203 0.797 44 H 0.057 0.943 45 H 0.137 0.863 46 H 0.111 0.889 47 H 0.134 0.866 48 H 0.133 0.867 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.778 -2.364 -16.925 19.689 hybrid contribution 0.419 0.185 1.434 1.506 sum -9.359 -2.179 -15.490 18.229 Atomic orbital electron populations 1.21897 0.87511 1.06440 1.06348 1.21653 0.92482 0.82156 0.74031 1.90722 1.72081 1.32965 1.52043 1.45870 1.05637 1.10363 1.75086 1.21020 0.83046 0.92792 1.05811 1.20613 0.81892 0.91601 0.75299 1.90678 1.55526 1.46645 1.51405 1.45625 1.07367 1.08973 1.74280 1.21100 0.89844 0.85035 1.05533 1.20769 0.90467 0.83732 0.75597 1.90668 1.70540 1.32203 1.52154 1.47612 1.06339 1.06618 1.71266 1.21994 0.96872 0.84534 1.03336 1.20626 0.79285 0.99908 0.93710 0.90998 1.21285 0.95593 0.96006 0.85424 1.42494 1.55296 1.39032 1.01414 1.19633 1.21318 1.11497 0.84784 0.90456 1.25538 1.00561 0.99078 1.01466 1.69848 1.36371 1.26724 1.28769 0.85108 0.77180 0.77461 0.80200 1.18828 1.22563 1.22048 1.22396 0.96255 1.01463 0.97916 1.23214 1.02921 0.90987 1.03483 1.23046 0.92237 1.02219 1.03424 0.87214 0.88286 0.87522 0.74187 0.88124 0.86960 0.74538 0.85780 0.88650 0.89159 0.90906 0.90709 0.93898 0.95634 0.79684 0.94288 0.86341 0.88903 0.86566 0.86713 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 10.30 71.24 0.73 -0.95 16 2 C 0.51 10.28 7.94 87.66 0.70 10.98 16 3 O -0.60 -17.68 17.10 -3.03 -0.05 -17.73 16 4 N -0.71 -13.60 5.53 -466.78 -2.58 -16.18 16 5 C 0.10 2.10 6.15 85.64 0.53 2.63 16 6 C 0.52 12.60 7.90 87.66 0.69 13.29 16 7 O -0.56 -15.79 15.67 -3.03 -0.05 -15.83 16 8 N -0.71 -18.09 5.53 -466.77 -2.58 -20.67 16 9 C 0.11 2.93 4.71 85.63 0.40 3.34 16 10 C 0.51 16.39 7.45 87.65 0.65 17.04 16 11 O -0.58 -22.71 14.99 -3.01 -0.05 -22.76 16 12 N -0.59 -17.41 2.24 -822.62 -1.85 -19.26 16 13 C 0.07 1.68 9.61 127.77 1.23 2.91 16 14 C 0.17 5.39 2.59 44.99 0.12 5.51 16 15 H 0.07 2.79 6.90 -2.38 -0.02 2.77 16 16 C 0.14 5.44 4.14 86.38 0.36 5.80 16 17 N -0.74 -37.10 5.43 -343.43 -1.87 -38.97 16 18 C -0.24 -13.24 9.99 84.03 0.84 -12.40 16 19 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 20 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 21 N -0.97 -59.74 13.06 21.65 0.28 -59.45 16 22 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 23 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 26 C -0.16 -3.69 5.48 -10.79 -0.06 -3.75 16 27 C -0.17 -3.33 9.59 30.62 0.29 -3.03 16 28 C -0.17 -3.56 9.94 30.62 0.30 -3.25 16 29 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.42 6.98 7.44 -92.71 -0.69 6.29 16 33 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.42 10.80 7.44 -92.71 -0.69 10.11 16 36 H 0.12 2.54 8.11 -2.38 -0.02 2.52 16 37 H 0.10 2.72 7.40 -2.39 -0.02 2.71 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.79 6.53 -2.39 -0.02 1.78 16 40 H 0.07 1.64 6.44 -2.39 -0.02 1.62 16 41 H 0.04 1.52 5.34 -2.38 -0.01 1.51 16 42 H 0.03 1.00 7.44 -2.39 -0.02 0.98 16 43 H 0.37 20.56 7.06 -92.71 -0.65 19.90 16 44 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 45 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.09 2.12 5.80 -2.39 -0.01 2.10 16 47 H 0.12 1.71 8.14 -2.38 -0.02 1.70 16 48 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.08 1.99 7.66 -2.39 -0.02 1.97 16 Total: -1.00 -79.25 404.69 -0.48 -79.74 By element: Atomic # 1 Polarization: 49.59 SS G_CDS: -1.03 Total: 48.57 kcal Atomic # 6 Polarization: 27.08 SS G_CDS: 7.25 Total: 34.33 kcal Atomic # 7 Polarization: -145.94 SS G_CDS: -8.59 Total: -154.53 kcal Atomic # 8 Polarization: -56.17 SS G_CDS: -0.14 Total: -56.32 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -79.25 -0.48 -79.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717731456.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.869 kcal (2) G-P(sol) polarization free energy of solvation -79.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds