Wall clock time and date at job start Sat Apr 11 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47050 * 2 1 4 4 C 1.34771 * 120.00009 * 179.97438 * 3 2 1 5 5 O 1.21287 * 119.99786 * 0.02562 * 4 3 2 6 6 C 1.50692 * 120.00244 * 179.97438 * 4 3 2 7 7 C 1.50705 * 109.47436 * 180.02562 * 6 4 3 8 8 O 1.21282 * 119.99904 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00080 * 180.02562 * 7 6 4 10 10 C 1.46506 * 120.00210 * 359.97438 * 9 7 6 11 11 C 1.46502 * 120.00120 * 179.97438 * 9 7 6 12 12 C 1.53777 * 113.61283 * 293.98038 * 11 9 7 13 13 C 1.53778 * 87.08336 * 270.87960 * 12 11 9 14 14 N 1.46895 * 113.61637 * 220.01861 * 13 12 11 15 15 C 1.46907 * 110.99777 * 204.99771 * 14 13 12 16 16 C 1.50703 * 109.46762 * 180.02562 * 15 14 13 17 17 O 1.21290 * 120.00248 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99679 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99955 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99731 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00196 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99526 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00283 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46903 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47119 * 119.99267 * 23 21 19 26 26 H 1.48496 * 109.47236 * 239.99751 * 23 21 19 27 27 C 1.53782 * 113.61795 * 196.47990 * 11 9 7 28 28 H 1.09001 * 109.47490 * 300.00288 * 1 2 3 29 29 H 1.09007 * 109.46799 * 60.00441 * 1 2 3 30 30 H 1.09001 * 109.47134 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47032 * 239.99562 * 2 1 3 32 32 H 1.09007 * 109.46799 * 119.99559 * 2 1 3 33 33 H 0.97002 * 119.99886 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47398 * 60.00264 * 6 4 3 35 35 H 1.09007 * 109.46886 * 299.99983 * 6 4 3 36 36 H 1.08996 * 109.47142 * 264.66510 * 10 9 7 37 37 H 1.08996 * 109.46660 * 24.66356 * 10 9 7 38 38 H 1.08999 * 109.46970 * 144.66091 * 10 9 7 39 39 H 1.08999 * 112.90516 * 65.22975 * 11 9 7 40 40 H 1.09010 * 113.61366 * 156.33288 * 12 11 9 41 41 H 1.08994 * 113.61821 * 25.43102 * 12 11 9 42 42 H 1.08999 * 113.61196 * 89.11455 * 13 12 11 43 43 H 1.00900 * 110.99696 * 81.04951 * 14 13 12 44 44 H 1.08998 * 109.47344 * 300.00228 * 15 14 13 45 45 H 1.08997 * 109.47021 * 60.00607 * 15 14 13 46 46 H 0.96997 * 120.00061 * 0.02562 * 18 16 15 47 47 H 0.97006 * 119.99133 * 180.02562 * 22 21 19 48 48 H 1.08999 * 113.61286 * 334.56889 * 27 11 9 49 49 H 1.08993 * 113.61692 * 203.66335 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6275 0.0005 5 8 4.1315 0.7056 0.0005 6 6 3.8457 3.0482 -0.0001 7 6 5.3527 3.0483 0.0001 8 8 5.9592 1.9980 0.0010 9 7 6.0266 4.2154 0.0001 10 6 5.2941 5.4842 -0.0005 11 6 7.4916 4.2155 0.0008 12 6 8.1070 3.6431 1.2886 13 6 8.0537 5.0716 1.8555 14 7 9.2376 5.4359 2.6452 15 6 8.9188 6.4922 3.6151 16 6 10.1549 6.8390 4.4044 17 8 11.1987 6.2634 4.1806 18 7 10.1006 7.7897 5.3582 19 6 11.2250 8.1049 6.0766 20 1 12.1543 7.5917 5.8779 21 6 11.1689 9.0846 7.0604 22 7 10.0383 9.7093 7.3017 23 14 12.7010 9.5146 8.0387 24 1 13.8351 8.6743 7.5771 25 1 13.0318 10.9480 7.8358 26 1 12.4540 9.2629 9.4812 27 6 8.1075 5.5667 0.4005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.3880 2.1185 -0.0004 34 1 3.4820 3.5626 0.8894 35 1 3.4828 3.5616 -0.8906 36 1 5.1956 5.8464 -1.0238 37 1 4.3035 5.3320 0.4279 38 1 5.8382 6.2181 0.5940 39 1 7.9163 3.7946 -0.9106 40 1 9.1202 3.2631 1.1570 41 1 7.4553 2.9420 1.8098 42 1 7.1174 5.3057 2.3620 43 1 10.0005 5.7135 2.0460 44 1 8.5659 7.3772 3.0857 45 1 8.1413 6.1402 4.2931 46 1 9.2659 8.2503 5.5369 47 1 9.9993 10.3935 7.9883 48 1 7.4560 6.4184 0.2048 49 1 9.1206 5.7126 0.0261 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717990484.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:47 Heat of formation + Delta-G solvation = -69.870895 kcal Electronic energy + Delta-G solvation = -29040.299098 eV Core-core repulsion = 24810.766667 eV Total energy + Delta-G solvation = -4229.532431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95099 -39.83699 -38.42104 -37.81741 -35.59971 -35.09000 -33.99079 -33.01772 -31.71532 -31.18307 -29.78426 -27.73737 -26.77968 -25.37854 -24.43552 -23.68535 -22.78520 -21.44030 -20.37357 -19.29243 -18.55668 -17.86867 -17.72831 -16.87754 -16.79235 -16.31183 -16.10767 -15.92960 -15.56619 -15.29340 -14.88899 -14.50851 -14.37685 -14.10453 -13.93507 -13.69084 -13.46110 -13.32995 -13.00410 -12.93994 -12.82273 -12.70467 -12.48651 -12.31044 -12.08883 -12.03858 -11.87067 -11.64263 -11.55496 -11.37165 -11.06183 -10.71308 -10.51914 -10.33692 -10.26481 -10.21300 -9.55502 -9.51487 -9.43321 -8.79486 -8.42759 -7.99996 -7.93663 -6.41542 -3.82055 2.31763 2.41370 2.53881 3.00904 3.16827 3.27392 3.35031 3.91695 4.03031 4.12139 4.26451 4.34838 4.44069 4.53081 4.60224 4.61073 4.66039 4.76543 4.84488 4.87431 4.92508 4.96679 5.09440 5.18315 5.26756 5.27994 5.35127 5.44052 5.48110 5.56108 5.66284 5.70268 5.79495 5.83953 5.97066 6.04752 6.11126 6.18700 6.28518 6.50040 7.05590 7.16159 7.29877 7.55987 7.70089 7.91049 8.07428 8.10125 8.61988 9.18701 9.55002 10.06645 10.76335 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020783 B = 0.001680 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.927983 B =16665.127787 C =17190.419650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.738 5.738 4 C 0.509 3.491 5 O -0.491 6.491 6 C -0.164 4.164 7 C 0.513 3.487 8 O -0.486 6.486 9 N -0.605 5.605 10 C 0.068 3.932 11 C 0.126 3.874 12 C -0.127 4.127 13 C 0.071 3.929 14 N -0.657 5.657 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.176 4.176 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.398 0.602 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.352 0.648 44 H 0.043 0.957 45 H 0.084 0.916 46 H 0.392 0.608 47 H 0.270 0.730 48 H 0.076 0.924 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.429 -8.443 -18.037 30.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.393 5.393 4 C 0.293 3.707 5 O -0.362 6.362 6 C -0.207 4.207 7 C 0.298 3.702 8 O -0.358 6.358 9 N -0.341 5.341 10 C -0.075 4.075 11 C 0.022 3.978 12 C -0.166 4.166 13 C -0.040 4.040 14 N -0.288 5.288 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.466 6.466 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.215 4.215 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.232 0.768 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.173 0.827 44 H 0.061 0.939 45 H 0.102 0.898 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.095 0.905 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.877 -10.485 -17.569 29.954 hybrid contribution -0.460 2.006 0.115 2.061 sum -22.337 -8.479 -17.454 29.589 Atomic orbital electron populations 1.22005 0.94403 1.03319 1.02475 1.21276 0.94125 0.82914 1.02549 1.46041 1.06892 1.08941 1.77473 1.20043 0.82325 0.90869 0.77447 1.90890 1.54367 1.45422 1.45511 1.21640 0.95588 0.97072 1.06390 1.19868 0.88780 0.83617 0.77939 1.90880 1.69111 1.29996 1.45764 1.47598 1.05829 1.05893 1.74780 1.21926 0.96940 0.86442 1.02190 1.21726 0.78911 0.97945 0.99192 1.23353 1.01811 0.96768 0.94704 1.23083 0.94230 0.96297 0.90376 1.59999 1.06837 1.42460 1.19480 1.21710 0.97819 0.93210 0.95437 1.19851 0.89770 0.83572 0.84228 1.90528 1.31737 1.54483 1.69885 1.41872 1.12665 1.33647 1.31961 1.19768 0.90808 1.18405 1.13809 0.87864 1.25257 0.98346 0.96507 0.97868 1.69625 1.25442 1.25775 1.33574 0.85798 0.81257 0.78203 0.79085 1.19201 1.20791 1.20756 1.24157 1.02023 0.96430 0.98940 0.91921 0.92007 0.90758 0.91537 0.91456 0.76793 0.86108 0.86251 0.92361 0.90885 0.90276 0.89755 0.88600 0.90766 0.88973 0.82748 0.93944 0.89763 0.77507 0.91971 0.90512 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.50 10.03 37.16 0.37 -0.13 16 2 C 0.11 0.70 6.39 -4.04 -0.03 0.67 16 3 N -0.74 -4.40 5.56 -60.29 -0.33 -4.73 16 4 C 0.51 4.95 7.82 -10.99 -0.09 4.87 16 5 O -0.49 -7.64 14.18 -18.96 -0.27 -7.91 16 6 C -0.16 -1.07 4.66 -29.04 -0.14 -1.21 16 7 C 0.51 5.75 7.38 -10.99 -0.08 5.67 16 8 O -0.49 -8.04 13.37 -18.96 -0.25 -8.30 16 9 N -0.60 -5.56 3.01 -173.00 -0.52 -6.08 16 10 C 0.07 0.35 9.74 59.85 0.58 0.94 16 11 C 0.13 1.35 4.09 -67.12 -0.27 1.08 16 12 C -0.13 -1.67 7.23 -25.92 -0.19 -1.85 16 13 C 0.07 0.89 3.96 -66.90 -0.26 0.62 16 14 N -0.66 -10.70 6.24 -107.13 -0.67 -11.37 16 15 C 0.05 0.89 6.01 -4.97 -0.03 0.86 16 16 C 0.44 10.47 7.82 -10.98 -0.09 10.38 16 17 O -0.58 -16.03 15.78 5.55 0.09 -15.94 16 18 N -0.56 -14.36 5.29 -10.96 -0.06 -14.41 16 19 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 20 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 23 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 C -0.18 -1.71 6.82 -25.92 -0.18 -1.89 16 28 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.40 0.97 8.47 -40.82 -0.35 0.63 16 34 H 0.12 0.45 7.42 -51.93 -0.39 0.06 16 35 H 0.12 0.38 8.11 -51.93 -0.42 -0.04 16 36 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.21 6.25 -51.93 -0.32 -0.12 16 38 H 0.08 0.43 5.63 -51.93 -0.29 0.14 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.10 1.32 8.14 -51.92 -0.42 0.89 16 41 H 0.07 1.12 7.41 -51.93 -0.38 0.73 16 42 H 0.09 1.10 7.76 -51.93 -0.40 0.69 16 43 H 0.35 5.83 7.89 -39.29 -0.31 5.52 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 1.39 8.13 -51.93 -0.42 0.97 16 46 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 48 H 0.08 0.62 5.81 -51.93 -0.30 0.32 16 49 H 0.10 0.95 7.82 -51.93 -0.41 0.55 16 LS Contribution 401.83 15.07 6.06 6.06 Total: -1.00 -38.69 401.83 -8.53 -47.21 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -7.64 Total: 11.19 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -0.63 Total: 11.98 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.86 Total: -60.40 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.43 Total: -32.15 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.69 -8.53 -47.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717990484.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.657 kcal (2) G-P(sol) polarization free energy of solvation -38.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds