Wall clock time and date at job start Sat Apr 11 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47050 * 2 1 4 4 C 1.34771 * 120.00009 * 179.97438 * 3 2 1 5 5 O 1.21287 * 119.99786 * 0.02562 * 4 3 2 6 6 C 1.50692 * 120.00244 * 179.97438 * 4 3 2 7 7 C 1.50705 * 109.47436 * 180.02562 * 6 4 3 8 8 O 1.21282 * 119.99904 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00080 * 180.02562 * 7 6 4 10 10 C 1.46506 * 120.00210 * 359.97438 * 9 7 6 11 11 C 1.46502 * 120.00120 * 179.97438 * 9 7 6 12 12 C 1.53777 * 113.61283 * 293.98038 * 11 9 7 13 13 C 1.53778 * 87.08336 * 270.87960 * 12 11 9 14 14 N 1.46895 * 113.61637 * 220.01861 * 13 12 11 15 15 C 1.46907 * 110.99777 * 204.99771 * 14 13 12 16 16 C 1.50703 * 109.46762 * 180.02562 * 15 14 13 17 17 O 1.21290 * 120.00248 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99679 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99955 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99731 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00196 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99526 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00283 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46903 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47119 * 119.99267 * 23 21 19 26 26 H 1.48496 * 109.47236 * 239.99751 * 23 21 19 27 27 C 1.53782 * 113.61795 * 196.47990 * 11 9 7 28 28 H 1.09001 * 109.47490 * 300.00288 * 1 2 3 29 29 H 1.09007 * 109.46799 * 60.00441 * 1 2 3 30 30 H 1.09001 * 109.47134 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47032 * 239.99562 * 2 1 3 32 32 H 1.09007 * 109.46799 * 119.99559 * 2 1 3 33 33 H 0.97002 * 119.99886 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47398 * 60.00264 * 6 4 3 35 35 H 1.09007 * 109.46886 * 299.99983 * 6 4 3 36 36 H 1.08996 * 109.47142 * 264.66510 * 10 9 7 37 37 H 1.08996 * 109.46660 * 24.66356 * 10 9 7 38 38 H 1.08999 * 109.46970 * 144.66091 * 10 9 7 39 39 H 1.08999 * 112.90516 * 65.22975 * 11 9 7 40 40 H 1.09010 * 113.61366 * 156.33288 * 12 11 9 41 41 H 1.08994 * 113.61821 * 25.43102 * 12 11 9 42 42 H 1.08999 * 113.61196 * 89.11455 * 13 12 11 43 43 H 1.00900 * 110.99696 * 81.04951 * 14 13 12 44 44 H 1.08998 * 109.47344 * 300.00228 * 15 14 13 45 45 H 1.08997 * 109.47021 * 60.00607 * 15 14 13 46 46 H 0.96997 * 120.00061 * 0.02562 * 18 16 15 47 47 H 0.97006 * 119.99133 * 180.02562 * 22 21 19 48 48 H 1.08999 * 113.61286 * 334.56889 * 27 11 9 49 49 H 1.08993 * 113.61692 * 203.66335 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6275 0.0005 5 8 4.1315 0.7056 0.0005 6 6 3.8457 3.0482 -0.0001 7 6 5.3527 3.0483 0.0001 8 8 5.9592 1.9980 0.0010 9 7 6.0266 4.2154 0.0001 10 6 5.2941 5.4842 -0.0005 11 6 7.4916 4.2155 0.0008 12 6 8.1070 3.6431 1.2886 13 6 8.0537 5.0716 1.8555 14 7 9.2376 5.4359 2.6452 15 6 8.9188 6.4922 3.6151 16 6 10.1549 6.8390 4.4044 17 8 11.1987 6.2634 4.1806 18 7 10.1006 7.7897 5.3582 19 6 11.2250 8.1049 6.0766 20 1 12.1543 7.5917 5.8779 21 6 11.1689 9.0846 7.0604 22 7 10.0383 9.7093 7.3017 23 14 12.7010 9.5146 8.0387 24 1 13.8351 8.6743 7.5771 25 1 13.0318 10.9480 7.8358 26 1 12.4540 9.2629 9.4812 27 6 8.1075 5.5667 0.4005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.3880 2.1185 -0.0004 34 1 3.4820 3.5626 0.8894 35 1 3.4828 3.5616 -0.8906 36 1 5.1956 5.8464 -1.0238 37 1 4.3035 5.3320 0.4279 38 1 5.8382 6.2181 0.5940 39 1 7.9163 3.7946 -0.9106 40 1 9.1202 3.2631 1.1570 41 1 7.4553 2.9420 1.8098 42 1 7.1174 5.3057 2.3620 43 1 10.0005 5.7135 2.0460 44 1 8.5659 7.3772 3.0857 45 1 8.1413 6.1402 4.2931 46 1 9.2659 8.2503 5.5369 47 1 9.9993 10.3935 7.9883 48 1 7.4560 6.4184 0.2048 49 1 9.1206 5.7126 0.0261 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717990484.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:46 Heat of formation + Delta-G solvation = -101.416915 kcal Electronic energy + Delta-G solvation = -29041.667036 eV Core-core repulsion = 24810.766667 eV Total energy + Delta-G solvation = -4230.900370 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.76202 -40.67978 -40.04499 -38.95061 -36.36565 -36.11242 -35.77573 -34.21985 -33.22872 -32.32232 -30.31133 -28.61458 -28.05974 -26.44785 -25.89273 -24.49837 -23.60067 -22.21433 -21.30560 -20.93058 -19.92866 -19.38322 -18.46754 -17.87183 -17.56525 -17.32030 -16.98625 -16.88219 -16.59712 -16.37167 -16.29440 -15.95106 -15.63003 -15.44027 -14.85370 -14.70531 -14.41808 -14.29465 -14.05021 -13.91439 -13.60389 -13.52525 -13.45524 -13.22906 -13.04104 -13.03279 -12.77100 -12.67337 -12.64469 -12.52965 -12.39430 -12.32360 -12.11551 -11.66434 -11.51326 -11.45203 -11.04377 -10.43301 -10.33364 -10.05890 -10.00934 -9.55269 -9.22955 -8.46805 -5.95190 1.36697 1.42286 1.56288 1.64209 1.75228 1.78432 2.05601 2.29667 2.43076 2.94949 3.20583 3.34861 3.45613 3.54933 3.68560 3.91911 4.02091 4.04517 4.18770 4.21308 4.27129 4.33386 4.38216 4.45294 4.51315 4.53230 4.55570 4.60608 4.67464 4.78572 4.91086 4.94375 4.97784 5.03215 5.07216 5.10286 5.18775 5.28094 5.41598 5.51332 5.67050 5.94019 6.17198 6.41890 6.44344 6.60921 6.62878 7.13266 7.25743 7.41806 7.56738 8.12643 8.70711 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020783 B = 0.001680 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.927983 B =16665.127787 C =17190.419650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 N -0.718 5.718 4 C 0.500 3.500 5 O -0.561 6.561 6 C -0.150 4.150 7 C 0.500 3.500 8 O -0.554 6.554 9 N -0.600 5.600 10 C 0.057 3.943 11 C 0.131 3.869 12 C -0.135 4.135 13 C 0.075 3.925 14 N -0.678 5.678 15 C 0.068 3.932 16 C 0.435 3.565 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.918 5.918 23 Si 0.992 3.008 24 H -0.275 1.275 25 H -0.269 1.269 26 H -0.272 1.272 27 C -0.154 4.154 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.419 0.581 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.106 0.894 43 H 0.348 0.652 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.107 0.893 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.392 -5.701 -18.551 32.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 N -0.374 5.374 4 C 0.286 3.714 5 O -0.438 6.438 6 C -0.192 4.192 7 C 0.288 3.712 8 O -0.430 6.430 9 N -0.335 5.335 10 C -0.084 4.084 11 C 0.026 3.974 12 C -0.175 4.175 13 C -0.035 4.035 14 N -0.309 5.309 15 C -0.064 4.064 16 C 0.223 3.777 17 O -0.513 6.513 18 N -0.209 5.209 19 C -0.465 4.465 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.816 3.184 24 H -0.200 1.200 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.193 4.193 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.257 0.743 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.124 0.876 43 H 0.168 0.832 44 H 0.093 0.907 45 H 0.118 0.882 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.125 0.875 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -24.953 -7.656 -18.092 31.759 hybrid contribution 0.417 1.103 0.255 1.206 sum -24.537 -6.554 -17.838 31.035 Atomic orbital electron populations 1.21938 0.91499 1.04053 1.03578 1.21304 0.96366 0.82851 1.00843 1.45911 1.06244 1.09664 1.75547 1.20723 0.82796 0.91669 0.76227 1.90874 1.56298 1.47673 1.48971 1.21697 0.91897 0.95480 1.10155 1.20747 0.90761 0.83064 0.76630 1.90864 1.70753 1.32500 1.48856 1.47699 1.05098 1.07132 1.73537 1.22299 0.97962 0.84238 1.03911 1.21562 0.80453 0.98083 0.97300 1.23328 1.00668 0.96899 0.96607 1.23123 0.93182 0.95592 0.91616 1.59947 1.08410 1.42301 1.20275 1.21561 0.94499 0.94932 0.95429 1.20981 0.91228 0.81983 0.83525 1.90497 1.34175 1.55649 1.70948 1.41920 1.12213 1.34372 1.32424 1.19698 0.91063 1.19839 1.15859 0.90543 1.26004 1.01290 0.95735 0.98066 1.69672 1.26675 1.25771 1.33827 0.84887 0.77487 0.78220 0.77834 1.20022 1.19383 1.19681 1.24001 1.02643 0.96669 0.95986 0.90891 0.90672 0.90311 0.93191 0.93492 0.74271 0.82255 0.81857 0.90362 0.87738 0.89989 0.90764 0.90314 0.93439 0.87584 0.83194 0.90664 0.88216 0.76861 0.91275 0.87528 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.03 71.98 0.72 0.07 16 2 C 0.11 1.33 6.39 86.38 0.55 1.88 16 3 N -0.72 -7.41 5.56 -463.06 -2.57 -9.98 16 4 C 0.50 9.40 7.82 87.66 0.69 10.09 16 5 O -0.56 -18.61 14.18 20.39 0.29 -18.32 16 6 C -0.15 -1.51 4.66 29.10 0.14 -1.38 16 7 C 0.50 10.80 7.38 87.66 0.65 11.44 16 8 O -0.55 -19.40 13.37 20.40 0.27 -19.13 16 9 N -0.60 -9.73 3.01 -819.64 -2.47 -12.19 16 10 C 0.06 0.32 9.74 127.77 1.24 1.56 16 11 C 0.13 2.72 4.09 45.52 0.19 2.90 16 12 C -0.14 -3.69 7.23 31.12 0.22 -3.46 16 13 C 0.07 1.76 3.96 45.44 0.18 1.94 16 14 N -0.68 -21.64 6.24 -492.84 -3.08 -24.72 16 15 C 0.07 2.27 6.01 85.56 0.51 2.79 16 16 C 0.44 20.79 7.82 87.66 0.69 21.48 16 17 O -0.63 -35.39 15.78 -3.06 -0.05 -35.44 16 18 N -0.57 -29.26 5.29 -306.98 -1.62 -30.88 16 19 C -0.33 -19.14 9.68 84.04 0.81 -18.32 16 20 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 21 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 22 N -0.92 -49.05 13.05 21.66 0.28 -48.76 16 23 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 C -0.15 -2.63 6.82 31.12 0.21 -2.42 16 28 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.07 0.15 8.14 -2.38 -0.02 0.13 16 30 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.42 0.62 8.47 -92.71 -0.79 -0.17 16 34 H 0.16 0.38 7.42 -2.39 -0.02 0.36 16 35 H 0.16 0.21 8.11 -2.38 -0.02 0.19 16 36 H 0.08 0.20 8.14 -2.39 -0.02 0.19 16 37 H 0.10 -0.04 6.25 -2.39 -0.01 -0.06 16 38 H 0.08 0.47 5.63 -2.39 -0.01 0.45 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 41 H 0.05 1.53 7.41 -2.39 -0.02 1.51 16 42 H 0.11 2.22 7.76 -2.39 -0.02 2.20 16 43 H 0.35 11.47 7.89 -89.69 -0.71 10.76 16 44 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.10 3.06 8.13 -2.39 -0.02 3.04 16 46 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 47 H 0.28 13.82 8.31 -92.70 -0.77 13.05 16 48 H 0.11 1.24 5.81 -2.39 -0.01 1.22 16 49 H 0.10 1.74 7.82 -2.39 -0.02 1.72 16 Total: -1.00 -91.91 401.83 -0.87 -92.79 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -1.22 Total: 33.17 kcal Atomic # 6 Polarization: 21.18 SS G_CDS: 7.27 Total: 28.45 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -9.46 Total: -126.54 kcal Atomic # 8 Polarization: -73.40 SS G_CDS: 0.51 Total: -72.89 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -91.91 -0.87 -92.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717990484.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.631 kcal (2) G-P(sol) polarization free energy of solvation -91.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds