Wall clock time and date at job start Sat Apr 11 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99612 * 2 1 4 4 C 1.52990 * 109.47320 * 270.00127 * 3 2 1 5 5 C 1.53003 * 109.47285 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47244 * 180.02562 * 5 4 3 7 7 C 1.46896 * 111.00187 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47365 * 179.97438 * 7 6 5 9 9 O 1.21295 * 120.00211 * 359.97438 * 8 7 6 10 10 N 1.34785 * 120.00136 * 179.97438 * 8 7 6 11 11 C 1.37092 * 119.99819 * 179.97438 * 10 8 7 12 12 H 1.07998 * 120.00839 * 359.97438 * 11 10 8 13 13 C 1.38954 * 119.99799 * 179.97438 * 11 10 8 14 14 N 1.31416 * 119.99873 * 179.97438 * 13 11 10 15 15 Si 1.86792 * 119.99933 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47553 * 90.00135 * 15 13 11 17 17 H 1.48512 * 109.47240 * 210.00085 * 15 13 11 18 18 H 1.48504 * 109.47449 * 329.99654 * 15 13 11 19 19 C 1.34769 * 120.00311 * 180.02562 * 2 1 3 20 20 O 1.21277 * 120.00262 * 179.97438 * 19 2 1 21 21 C 1.50699 * 119.99886 * 359.97438 * 19 2 1 22 22 H 1.09003 * 110.29061 * 41.97641 * 21 19 2 23 23 C 1.54480 * 110.24770 * 279.99971 * 21 19 2 24 24 C 1.54627 * 101.76536 * 266.41615 * 23 21 19 25 25 C 1.51286 * 104.19454 * 335.20174 * 24 23 21 26 26 O 1.21279 * 124.93933 * 195.99132 * 25 24 23 27 27 N 1.34413 * 110.11622 * 16.25141 * 25 24 23 28 28 C 1.46500 * 124.34944 * 180.40817 * 27 25 24 29 29 H 1.09003 * 109.47071 * 269.99638 * 1 2 3 30 30 H 1.08990 * 109.47549 * 29.99886 * 1 2 3 31 31 H 1.09003 * 109.47136 * 149.99939 * 1 2 3 32 32 H 1.09007 * 109.46926 * 30.00555 * 3 2 1 33 33 H 1.09004 * 109.46505 * 150.00118 * 3 2 1 34 34 H 1.08998 * 109.47214 * 300.00058 * 4 3 2 35 35 H 1.09004 * 109.47339 * 60.00502 * 4 3 2 36 36 H 1.09003 * 109.46844 * 299.99502 * 5 4 3 37 37 H 1.08996 * 109.47177 * 59.99860 * 5 4 3 38 38 H 1.00901 * 111.00032 * 56.04087 * 6 5 4 39 39 H 1.08999 * 109.46987 * 299.99748 * 7 6 5 40 40 H 1.08997 * 109.47290 * 59.99662 * 7 6 5 41 41 H 0.96996 * 119.99649 * 359.97438 * 10 8 7 42 42 H 0.96997 * 119.99722 * 179.97438 * 14 13 11 43 43 H 1.09003 * 110.97169 * 148.29929 * 23 21 19 44 44 H 1.08999 * 110.97225 * 24.53544 * 23 21 19 45 45 H 1.09004 * 110.48832 * 216.52571 * 24 23 21 46 46 H 1.09002 * 110.59848 * 93.93277 * 24 23 21 47 47 H 1.09002 * 109.47103 * 0.02562 * 28 27 25 48 48 H 1.09003 * 109.46942 * 120.02620 * 28 27 25 49 49 H 1.08997 * 109.47169 * 240.02594 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4424 5 6 3.2179 3.0353 -1.4424 6 7 3.4621 3.4597 -2.8273 7 6 4.1963 4.7315 -2.8665 8 6 4.4283 5.1336 -4.3002 9 8 4.0226 4.4297 -5.2008 10 7 5.0868 6.2754 -4.5817 11 6 5.2984 6.6409 -5.8860 12 1 4.9379 6.0138 -6.6879 13 6 5.9768 7.8183 -6.1762 14 7 6.1801 8.1685 -7.4264 15 14 6.6011 8.9027 -4.7893 16 1 7.9797 8.4913 -4.4214 17 1 6.6096 10.3196 -5.2341 18 1 5.7104 8.7597 -3.6097 19 6 2.1389 -1.1671 -0.0005 20 8 3.3517 -1.1671 -0.0010 21 6 1.3855 -2.4722 -0.0005 22 1 0.5380 -2.4194 -0.6840 23 6 0.9008 -2.8097 1.4269 24 6 2.0510 -3.7023 1.9477 25 6 2.6711 -4.2777 0.6934 26 8 3.4187 -5.2322 0.6631 27 7 2.2774 -3.5736 -0.3818 28 6 2.6862 -3.8678 -1.7575 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6083 2.0284 0.5140 33 1 3.1499 1.1384 0.5139 34 1 3.0415 0.9509 -1.9563 35 1 1.5000 1.8409 -1.9562 36 1 2.6291 3.7951 -0.9284 37 1 4.1703 2.9046 -0.9287 38 1 2.5975 3.5256 -3.3432 39 1 3.6141 5.5027 -2.3622 40 1 5.1556 4.6129 -2.3630 41 1 5.4110 6.8385 -3.8615 42 1 6.6533 8.9906 -7.6290 43 1 -0.0391 -3.3612 1.3996 44 1 0.8041 -1.9068 2.0298 45 1 1.6593 -4.4993 2.5798 46 1 2.7811 -3.1062 2.4953 47 1 3.3478 -4.7341 -1.7626 48 1 1.8039 -4.0809 -2.3610 49 1 3.2111 -3.0074 -2.1724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723097871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:48 Heat of formation + Delta-G solvation = -119.315897 kcal Electronic energy + Delta-G solvation = -29107.779918 eV Core-core repulsion = 24876.103391 eV Total energy + Delta-G solvation = -4231.676528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.10020 -40.37975 -40.25099 -37.82770 -37.22627 -36.53930 -35.91252 -33.88518 -33.76718 -32.90980 -29.75286 -28.62582 -27.70563 -27.55249 -26.27510 -24.74014 -23.34639 -22.47700 -21.32345 -21.09207 -20.27097 -20.01157 -18.61966 -17.93453 -17.79746 -17.37053 -17.22655 -16.78799 -16.60551 -16.33736 -16.10904 -15.72020 -15.63400 -15.08919 -14.93085 -14.72414 -14.69492 -14.62678 -14.35067 -14.12387 -14.00957 -13.77101 -13.58418 -13.39604 -13.26327 -13.17980 -12.97034 -12.88195 -12.72229 -12.45944 -12.41646 -12.34766 -12.23290 -11.98256 -11.67417 -11.53285 -11.16001 -10.98619 -10.47772 -10.26884 -9.80931 -9.67788 -9.32899 -8.42881 -6.04177 1.29101 1.34801 1.35321 1.43968 1.51046 1.80649 1.92954 2.15602 2.22103 2.73043 3.13190 3.23721 3.37966 3.43395 3.49356 3.82950 3.98392 4.09505 4.13081 4.16056 4.25134 4.31730 4.34656 4.40739 4.45609 4.50606 4.54449 4.56409 4.65033 4.74659 4.75378 4.76709 4.86110 4.89329 5.01291 5.08490 5.16718 5.20975 5.33258 5.51150 5.56171 5.88979 5.95728 6.04814 6.35473 6.39631 6.58019 6.85913 6.99450 7.13662 7.37448 7.94029 8.74759 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.001657 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.684622 B =16896.229510 C =17318.424415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.607 5.607 3 C 0.121 3.879 4 C -0.121 4.121 5 C 0.066 3.934 6 N -0.695 5.695 7 C 0.063 3.937 8 C 0.446 3.554 9 O -0.616 6.616 10 N -0.590 5.590 11 C -0.331 4.331 12 H 0.054 0.946 13 C -0.016 4.016 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.259 1.259 17 H -0.274 1.274 18 H -0.229 1.229 19 C 0.493 3.507 20 O -0.580 6.580 21 C 0.110 3.890 22 H 0.149 0.851 23 C -0.102 4.102 24 C -0.152 4.152 25 C 0.506 3.494 26 O -0.586 6.586 27 N -0.606 5.606 28 C 0.090 3.910 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.345 0.655 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.390 0.610 42 H 0.280 0.720 43 H 0.134 0.866 44 H 0.115 0.885 45 H 0.127 0.873 46 H 0.100 0.900 47 H 0.068 0.932 48 H 0.095 0.905 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.732 -16.662 27.557 37.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.339 5.339 3 C -0.003 4.003 4 C -0.160 4.160 5 C -0.063 4.063 6 N -0.328 5.328 7 C -0.069 4.069 8 C 0.234 3.766 9 O -0.501 6.501 10 N -0.232 5.232 11 C -0.460 4.460 12 H 0.072 0.928 13 C -0.215 4.215 14 N -0.574 5.574 15 Si 0.786 3.214 16 H -0.184 1.184 17 H -0.199 1.199 18 H -0.152 1.152 19 C 0.280 3.720 20 O -0.459 6.459 21 C 0.003 3.997 22 H 0.166 0.834 23 C -0.140 4.140 24 C -0.192 4.192 25 C 0.296 3.704 26 O -0.466 6.466 27 N -0.338 5.338 28 C -0.052 4.052 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.164 0.836 39 H 0.100 0.900 40 H 0.127 0.873 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.153 0.847 44 H 0.133 0.867 45 H 0.145 0.855 46 H 0.118 0.882 47 H 0.086 0.914 48 H 0.114 0.886 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.338 -17.883 26.626 36.946 hybrid contribution 0.583 1.417 -0.402 1.584 sum -17.755 -16.466 26.224 35.694 Atomic orbital electron populations 1.22305 0.76227 1.05120 1.04359 1.47979 1.08895 1.04912 1.72143 1.21413 0.97942 0.85201 0.95713 1.21766 1.00256 0.96291 0.97695 1.21916 1.00292 0.96157 0.87903 1.60003 1.27613 1.30421 1.14770 1.21617 1.01625 0.92192 0.91482 1.21043 0.81565 0.81572 0.92409 1.90540 1.55184 1.54235 1.50136 1.42027 1.52524 1.21787 1.06815 1.19013 1.36180 1.07192 0.83638 0.92778 1.26152 0.96735 0.98410 1.00162 1.69808 1.41876 1.25421 1.20316 0.85340 0.79896 0.77704 0.78418 1.18363 1.19853 1.15230 1.21547 0.87894 0.86829 0.75768 1.90751 1.16363 1.87820 1.50969 1.22031 0.92501 0.82979 1.02238 0.83371 1.22722 0.98983 1.01902 0.90390 1.22410 0.99653 1.02117 0.95031 1.21730 0.79393 0.81539 0.87747 1.90687 1.38551 1.30190 1.87201 1.48063 1.48820 1.29325 1.07565 1.21643 1.01615 1.01160 0.80768 0.89325 0.89740 0.89041 0.86882 0.91788 0.94465 0.90795 0.92367 0.91155 0.83605 0.89967 0.87253 0.77399 0.91101 0.84746 0.86658 0.85476 0.88201 0.91353 0.88647 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.02 10.05 127.77 1.28 1.30 16 2 N -0.61 -6.21 2.87 -846.78 -2.43 -8.64 16 3 C 0.12 1.54 5.41 86.38 0.47 2.01 16 4 C -0.12 -2.20 5.80 30.59 0.18 -2.02 16 5 C 0.07 1.32 5.69 86.30 0.49 1.81 16 6 N -0.70 -20.67 6.13 -517.96 -3.17 -23.84 16 7 C 0.06 1.94 6.17 85.56 0.53 2.47 16 8 C 0.45 20.48 7.82 87.65 0.69 21.16 16 9 O -0.62 -34.91 15.78 -3.08 -0.05 -34.96 16 10 N -0.59 -28.12 5.09 -306.98 -1.56 -29.68 16 11 C -0.33 -19.63 10.16 84.04 0.85 -18.78 16 12 H 0.05 3.83 7.39 -2.91 -0.02 3.80 16 13 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 14 N -0.93 -56.66 13.96 21.66 0.30 -56.36 16 15 Si 0.97 38.83 27.74 68.60 1.90 40.73 16 16 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 17 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 18 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 19 C 0.49 8.01 6.85 87.66 0.60 8.61 16 20 O -0.58 -16.41 16.14 -3.02 -0.05 -16.46 16 21 C 0.11 1.02 2.66 44.70 0.12 1.14 16 22 H 0.15 0.32 6.46 -2.39 -0.02 0.30 16 23 C -0.10 -0.26 6.44 31.65 0.20 -0.06 16 24 C -0.15 -1.62 6.85 30.59 0.21 -1.41 16 25 C 0.51 10.99 8.02 87.90 0.71 11.69 16 26 O -0.59 -18.52 17.35 -3.03 -0.05 -18.57 16 27 N -0.61 -10.78 2.55 -823.07 -2.09 -12.87 16 28 C 0.09 1.61 11.14 127.77 1.42 3.03 16 29 H 0.09 -0.37 8.14 -2.39 -0.02 -0.38 16 30 H 0.08 -0.01 8.07 -2.39 -0.02 -0.03 16 31 H 0.09 -0.29 6.00 -2.39 -0.01 -0.30 16 32 H 0.11 0.70 8.07 -2.38 -0.02 0.68 16 33 H 0.06 1.14 7.42 -2.39 -0.02 1.12 16 34 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.35 10.63 8.43 -89.69 -0.76 9.88 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.39 15.27 5.76 -92.71 -0.53 14.74 16 42 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 43 H 0.13 -0.53 8.14 -2.39 -0.02 -0.55 16 44 H 0.12 -0.09 7.88 -2.39 -0.02 -0.11 16 45 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.07 1.45 7.53 -2.39 -0.02 1.43 16 48 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -98.60 405.91 0.63 -97.97 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.38 Total: 32.14 kcal Atomic # 6 Polarization: 22.32 SS G_CDS: 8.21 Total: 30.53 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -8.96 Total: -131.39 kcal Atomic # 8 Polarization: -69.84 SS G_CDS: -0.15 Total: -69.99 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.90 Total: 40.73 kcal Total: -98.60 0.63 -97.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723097871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.343 kcal (2) G-P(sol) polarization free energy of solvation -98.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds