Wall clock time and date at job start Sat Apr 11 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21273 * 120.00417 * 2 1 4 4 N 1.34786 * 119.99566 * 180.27243 * 2 1 3 5 5 C 1.46493 * 119.99872 * 179.72579 * 4 2 1 6 6 C 1.50702 * 109.47046 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00116 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99969 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99999 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47046 * 179.97438 * 9 8 6 11 11 O 1.21286 * 119.99997 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99826 * 180.02562 * 10 9 8 13 13 C 1.47419 * 125.64802 * 354.11957 * 12 10 9 14 14 C 1.54696 * 104.94334 * 204.07227 * 13 12 10 15 15 C 1.55156 * 101.67557 * 323.27838 * 14 13 12 16 16 C 1.47025 * 125.64534 * 174.42584 * 12 10 9 17 17 H 1.08998 * 109.88225 * 59.33523 * 16 12 10 18 18 C 1.52992 * 109.88582 * 298.32195 * 16 12 10 19 19 N 1.46500 * 109.47236 * 173.31716 * 18 16 12 20 20 C 1.46507 * 120.00032 * 95.32792 * 19 18 16 21 21 C 1.36935 * 120.00130 * 275.32522 * 19 18 16 22 22 H 1.08007 * 119.99733 * 29.89550 * 21 19 18 23 23 C 1.38815 * 120.00168 * 209.89295 * 21 19 18 24 24 N 1.31616 * 119.99948 * 7.62375 * 23 21 19 25 25 Si 1.86802 * 119.99871 * 187.62061 * 23 21 19 26 26 H 1.48499 * 109.47165 * 59.99817 * 25 23 21 27 27 H 1.48499 * 109.46746 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46844 * 300.00090 * 25 23 21 29 29 H 1.08993 * 109.47774 * 179.72135 * 1 2 3 30 30 H 1.08995 * 109.47337 * 299.72969 * 1 2 3 31 31 H 1.09010 * 109.46624 * 59.72295 * 1 2 3 32 32 H 0.97002 * 119.99678 * 359.72916 * 4 2 1 33 33 H 1.08998 * 109.47685 * 300.00490 * 5 4 2 34 34 H 1.09005 * 109.47090 * 60.00474 * 5 4 2 35 35 H 0.97005 * 120.00058 * 359.97438 * 8 6 5 36 36 H 1.08993 * 109.47261 * 300.00149 * 9 8 6 37 37 H 1.09005 * 109.46737 * 60.00173 * 9 8 6 38 38 H 1.08997 * 110.37228 * 323.00228 * 13 12 10 39 39 H 1.09000 * 110.36551 * 85.32719 * 13 12 10 40 40 H 1.08997 * 111.10202 * 205.10981 * 14 13 12 41 41 H 1.08995 * 110.81347 * 81.32189 * 14 13 12 42 42 H 1.08995 * 110.72414 * 276.96829 * 15 14 13 43 43 H 1.09001 * 110.87132 * 153.76455 * 15 14 13 44 44 H 1.09004 * 109.46905 * 293.31703 * 18 16 12 45 45 H 1.08995 * 109.47372 * 53.31354 * 18 16 12 46 46 H 1.08994 * 109.46919 * 85.73149 * 20 19 18 47 47 H 1.08998 * 109.47061 * 205.74028 * 20 19 18 48 48 H 1.09007 * 109.46961 * 325.73618 * 20 19 18 49 49 H 0.96997 * 120.00025 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0056 5 6 3.6457 -1.1674 -0.0116 6 6 4.1480 -2.5882 -0.0177 7 8 3.3598 -3.5100 -0.0175 8 7 5.4730 -2.8346 -0.0234 9 6 5.9613 -4.2158 -0.0287 10 6 7.4683 -4.2159 -0.0351 11 8 8.0747 -3.1655 -0.0347 12 7 8.1421 -5.3831 -0.0412 13 6 7.5401 -6.7233 0.0803 14 6 8.6731 -7.6211 0.6312 15 6 9.9153 -7.0395 -0.0941 16 6 9.5998 -5.5303 -0.1638 17 1 10.0953 -5.0075 0.6542 18 6 10.0693 -4.9620 -1.5044 19 7 11.5335 -4.9668 -1.5510 20 6 12.2427 -6.0832 -2.1814 21 6 12.2394 -3.9280 -1.0055 22 1 11.8354 -3.3832 -0.1649 23 6 13.4741 -3.5751 -1.5327 24 7 13.8991 -4.1356 -2.6451 25 14 14.5322 -2.3046 -0.6634 26 1 14.8499 -2.7792 0.7073 27 1 15.7923 -2.1063 -1.4236 28 1 13.7952 -1.0179 -0.5833 29 1 -0.3634 -1.0275 -0.0050 30 1 -0.3634 0.5096 0.8923 31 1 -0.3633 0.5182 -0.8876 32 1 1.6957 -2.0073 -0.0056 33 1 4.0055 -0.6514 -0.9018 34 1 4.0128 -0.6557 0.8781 35 1 6.1034 -2.0973 -0.0239 36 1 5.6013 -4.7319 0.8613 37 1 5.5945 -4.7273 -0.9187 38 1 6.7012 -6.7008 0.7759 39 1 7.2149 -7.0830 -0.8959 40 1 8.5145 -8.6645 0.3587 41 1 8.7641 -7.5105 1.7117 42 1 10.0096 -7.4603 -1.0951 43 1 10.8216 -7.2176 0.4846 44 1 9.6779 -5.5753 -2.3161 45 1 9.7057 -3.9402 -1.6133 46 1 12.3246 -5.9027 -3.2531 47 1 13.2399 -6.1700 -1.7501 48 1 11.6909 -7.0075 -2.0097 49 1 14.7620 -3.8893 -3.0134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725038660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:10 Heat of formation + Delta-G solvation = -78.258948 kcal Electronic energy + Delta-G solvation = -29692.209188 eV Core-core repulsion = 25462.313023 eV Total energy + Delta-G solvation = -4229.896165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.68262 -40.05272 -39.27958 -37.57181 -35.29404 -34.97775 -34.60300 -31.94641 -31.40286 -30.95292 -29.44650 -28.54845 -26.40527 -26.01890 -25.16765 -22.89429 -21.22186 -21.03692 -20.95349 -20.61978 -19.08228 -18.12301 -17.09430 -16.94077 -16.72752 -16.44568 -16.32744 -15.84934 -15.75014 -15.42108 -14.80193 -14.70983 -14.42472 -13.90278 -13.71312 -13.56712 -13.43979 -13.32604 -13.17010 -12.97278 -12.95270 -12.82864 -12.56263 -12.31345 -12.01722 -11.89121 -11.25246 -11.08081 -10.91628 -10.82011 -10.67177 -10.45398 -10.43324 -10.33930 -10.18710 -9.94504 -9.84264 -9.66469 -9.63210 -9.47736 -8.63573 -8.40785 -6.60794 -5.72356 -3.23139 2.13067 2.27470 2.31616 2.60232 2.93289 3.25451 3.41832 3.46035 3.48517 4.23080 4.31697 4.49638 4.53104 4.61116 4.79657 4.87223 4.91672 4.98687 5.02177 5.03394 5.08044 5.12328 5.37978 5.40643 5.41172 5.50451 5.60184 5.70476 5.81159 5.86817 5.91033 5.97462 6.15286 6.18534 6.42781 6.46906 6.69952 6.81166 6.98183 7.06261 7.10883 7.34337 7.57343 7.68640 7.73919 7.82477 7.86558 8.15374 8.48394 9.28159 9.88010 10.40018 11.34181 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012752 B = 0.002284 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.227133 B =12254.290778 C =13993.057093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.512 3.488 3 O -0.548 6.548 4 N -0.719 5.719 5 C 0.098 3.902 6 C 0.514 3.486 7 O -0.544 6.544 8 N -0.709 5.709 9 C 0.105 3.895 10 C 0.517 3.483 11 O -0.525 6.525 12 N -0.607 5.607 13 C 0.096 3.904 14 C -0.135 4.135 15 C -0.115 4.115 16 C 0.115 3.885 17 H 0.078 0.922 18 C 0.146 3.854 19 N -0.593 5.593 20 C 0.162 3.838 21 C -0.254 4.254 22 H 0.065 0.935 23 C 0.006 3.994 24 N -0.908 5.908 25 Si 0.905 3.095 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.412 0.588 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.418 0.582 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.035 0.965 45 H 0.055 0.945 46 H 0.018 0.982 47 H 0.051 0.949 48 H -0.004 1.004 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.866 -4.389 6.226 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.299 3.701 3 O -0.425 6.425 4 N -0.375 5.375 5 C -0.029 4.029 6 C 0.300 3.700 7 O -0.421 6.421 8 N -0.364 5.364 9 C -0.022 4.022 10 C 0.304 3.696 11 O -0.401 6.401 12 N -0.342 5.342 13 C -0.027 4.027 14 C -0.173 4.173 15 C -0.153 4.153 16 C 0.010 3.990 17 H 0.096 0.904 18 C 0.018 3.982 19 N -0.316 5.316 20 C 0.017 3.983 21 C -0.384 4.384 22 H 0.083 0.917 23 C -0.192 4.192 24 N -0.552 5.552 25 Si 0.734 3.266 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.208 1.208 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.250 0.750 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.256 0.744 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.036 0.964 47 H 0.070 0.930 48 H 0.014 0.986 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.484 -3.640 6.100 24.535 hybrid contribution 0.827 0.452 0.386 1.019 sum -22.657 -3.187 6.486 23.781 Atomic orbital electron populations 1.21827 0.91067 1.04477 1.05472 1.20859 0.90804 0.83010 0.75402 1.90753 1.70708 1.31388 1.49637 1.45871 1.05880 1.10021 1.75770 1.21041 0.82494 0.93897 1.05485 1.20454 0.82306 0.91249 0.76009 1.90695 1.55200 1.45918 1.50335 1.45624 1.07199 1.09123 1.74497 1.21087 0.91920 0.84528 1.04664 1.19943 0.88885 0.83302 0.77465 1.90776 1.69452 1.30276 1.49643 1.48578 1.09005 1.05060 1.71555 1.22338 0.96662 0.82810 1.00909 1.22765 0.95090 0.98883 1.00586 1.22650 0.97481 0.93944 1.01270 1.22686 0.77282 0.96354 1.02655 0.90400 1.20982 0.86137 0.99248 0.91847 1.43722 0.98720 1.21247 1.67933 1.20819 0.95297 0.85579 0.96580 1.19108 1.00682 1.09068 1.09538 0.91707 1.25185 0.99699 0.98485 0.95879 1.70014 1.20454 1.45073 1.19695 0.86341 0.79636 0.81798 0.78785 1.21020 1.21656 1.20800 0.90358 0.88551 0.88516 0.74952 0.87869 0.87941 0.74363 0.88514 0.88252 0.90908 0.91144 0.90055 0.90908 0.90519 0.90048 0.94647 0.92688 0.96415 0.92984 0.98567 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.39 36.00 0.37 -0.43 16 2 C 0.51 4.60 7.94 -10.98 -0.09 4.51 16 3 O -0.55 -7.31 17.10 5.56 0.10 -7.22 16 4 N -0.72 -5.84 5.53 -61.47 -0.34 -6.18 16 5 C 0.10 0.84 6.15 -5.20 -0.03 0.81 16 6 C 0.51 5.10 7.90 -10.99 -0.09 5.01 16 7 O -0.54 -6.50 15.67 5.56 0.09 -6.41 16 8 N -0.71 -7.28 5.53 -61.47 -0.34 -7.62 16 9 C 0.11 1.11 5.26 -5.19 -0.03 1.08 16 10 C 0.52 7.39 7.62 -10.99 -0.08 7.30 16 11 O -0.53 -9.65 14.86 5.55 0.08 -9.57 16 12 N -0.61 -8.39 3.07 -163.15 -0.50 -8.89 16 13 C 0.10 0.93 6.63 -2.65 -0.02 0.91 16 14 C -0.14 -1.33 7.07 -24.70 -0.17 -1.50 16 15 C -0.12 -1.60 5.61 -24.89 -0.14 -1.74 16 16 C 0.11 1.97 3.05 -66.95 -0.20 1.76 16 17 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 18 C 0.15 3.08 5.15 -4.05 -0.02 3.06 16 19 N -0.59 -14.83 2.80 -181.12 -0.51 -15.34 16 20 C 0.16 3.87 8.75 59.85 0.52 4.40 16 21 C -0.25 -7.10 9.59 -15.06 -0.14 -7.24 16 22 H 0.07 1.83 7.84 -52.48 -0.41 1.42 16 23 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 24 N -0.91 -26.71 10.92 55.49 0.61 -26.10 16 25 Si 0.90 22.34 29.56 -169.99 -5.02 17.32 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 29 H 0.08 0.21 7.91 -51.93 -0.41 -0.20 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.41 2.91 7.27 -40.82 -0.30 2.61 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.42 4.36 7.44 -40.82 -0.30 4.06 16 36 H 0.10 0.89 7.76 -51.93 -0.40 0.48 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.54 7.52 -51.93 -0.39 0.15 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.09 6.41 -51.93 -0.33 0.76 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.04 0.70 7.87 -51.93 -0.41 0.29 16 45 H 0.05 1.30 6.81 -51.93 -0.35 0.95 16 46 H 0.02 0.46 7.75 -51.93 -0.40 0.06 16 47 H 0.05 1.35 7.05 -51.93 -0.37 0.98 16 48 H 0.00 -0.08 6.15 -51.93 -0.32 -0.40 16 49 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 400.12 15.07 6.03 6.03 Total: -1.00 -36.04 400.12 -7.78 -43.83 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.76 Total: 2.14 kcal Atomic # 6 Polarization: 18.22 SS G_CDS: -0.21 Total: 18.01 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -1.08 Total: -64.13 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.26 Total: -23.20 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.04 -7.78 -43.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725038660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.433 kcal (2) G-P(sol) polarization free energy of solvation -36.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds