Wall clock time and date at job start Sat Apr 11 2020 06:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 111.00026 * 2 1 4 4 C 1.52998 * 109.47222 * 66.04223 * 3 2 1 5 5 C 1.53001 * 109.47476 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47156 * 180.02562 * 5 4 3 7 7 C 1.34782 * 119.99487 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00183 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99398 * 179.97438 * 7 6 5 10 10 C 1.53004 * 109.46862 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.43542 * 305.70357 * 10 9 7 12 12 C 1.54623 * 110.48558 * 183.15952 * 10 9 7 13 13 C 1.54693 * 101.67182 * 265.90824 * 12 10 9 14 14 N 1.46764 * 105.53298 * 334.74151 * 13 12 10 15 15 C 1.34421 * 111.29864 * 16.91916 * 14 13 12 16 16 O 1.21280 * 124.94192 * 179.55015 * 15 14 13 17 17 C 1.46897 * 110.99866 * 236.04668 * 2 1 3 18 18 C 1.50700 * 109.47376 * 293.95196 * 17 2 1 19 19 O 1.21297 * 119.99574 * 359.97438 * 18 17 2 20 20 N 1.34772 * 120.00105 * 180.02562 * 18 17 2 21 21 C 1.37104 * 120.00103 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99343 * 359.97438 * 21 20 18 23 23 C 1.38941 * 120.00114 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00314 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99930 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47544 * 89.99641 * 25 23 21 27 27 H 1.48498 * 109.46809 * 209.99848 * 25 23 21 28 28 H 1.48506 * 109.47010 * 329.99412 * 25 23 21 29 29 H 1.09003 * 109.47059 * 60.00121 * 1 2 3 30 30 H 1.09002 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47319 * 299.99986 * 1 2 3 32 32 H 1.09006 * 109.46923 * 306.05061 * 3 2 1 33 33 H 1.09001 * 109.47215 * 186.04646 * 3 2 1 34 34 H 1.09004 * 109.46752 * 60.00108 * 4 3 2 35 35 H 1.09001 * 109.47371 * 300.00327 * 4 3 2 36 36 H 1.09000 * 109.46775 * 59.99994 * 5 4 3 37 37 H 1.09001 * 109.46917 * 300.00396 * 5 4 3 38 38 H 0.96991 * 120.00195 * 0.02562 * 6 5 4 39 39 H 1.09002 * 109.47212 * 60.00796 * 9 7 6 40 40 H 1.09001 * 109.47426 * 299.99993 * 9 7 6 41 41 H 1.09002 * 110.97251 * 24.11352 * 12 10 9 42 42 H 1.09010 * 110.97069 * 147.87042 * 12 10 9 43 43 H 1.08998 * 110.29652 * 215.68198 * 13 12 10 44 44 H 1.08991 * 110.13680 * 93.72413 * 13 12 10 45 45 H 0.96996 * 124.35219 * 196.94825 * 14 13 12 46 46 H 1.08997 * 109.47438 * 53.95795 * 17 2 1 47 47 H 1.09003 * 109.47118 * 173.95097 * 17 2 1 48 48 H 0.96994 * 120.00494 * 0.02562 * 20 18 17 49 49 H 0.96997 * 120.00274 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1791 3.4861 1.3180 6 7 1.8310 4.1427 2.5805 7 6 2.2127 5.4156 2.8055 8 8 2.8446 6.0172 1.9631 9 6 1.8541 6.0913 4.1039 10 6 2.4031 7.5194 4.1043 11 1 3.4731 7.5159 3.8966 12 6 2.1169 8.2089 5.4584 13 6 0.7894 8.9450 5.1603 14 7 0.7768 9.1605 3.7087 15 6 1.6696 8.3688 3.0898 16 8 1.8590 8.3391 1.8922 17 6 1.9954 -0.7660 -1.1376 18 6 1.6369 -2.2204 -0.9729 19 8 1.0055 -2.5833 -0.0029 20 7 2.0189 -3.1181 -1.9028 21 6 1.6932 -4.4414 -1.7527 22 1 1.1309 -4.7644 -0.8890 23 6 2.0874 -5.3669 -2.7111 24 7 2.7720 -4.9739 -3.7617 25 14 1.6431 -7.1698 -2.5069 26 1 0.3314 -7.4325 -3.1515 27 1 2.6861 -8.0120 -3.1456 28 1 1.5587 -7.4981 -1.0610 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.5610 1.9274 -0.8309 33 1 3.0797 1.3444 -0.1082 34 1 2.0658 1.5015 2.1491 35 1 0.5471 2.0845 1.4264 36 1 1.7444 4.0417 0.4871 37 1 3.2634 3.4594 1.2095 38 1 1.3266 3.6612 3.2546 39 1 2.2885 5.5354 4.9349 40 1 0.7698 6.1184 4.2121 41 1 1.9874 7.4724 6.2515 42 1 2.9068 8.9166 5.7105 43 1 0.7613 9.9007 5.6838 44 1 -0.0575 8.3266 5.4573 45 1 0.1989 9.7932 3.2543 46 1 1.5612 -0.3872 -2.0628 47 1 3.0797 -0.6610 -1.1757 48 1 2.5248 -2.8281 -2.6779 49 1 3.0469 -5.6199 -4.4309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731246241.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:36 Heat of formation + Delta-G solvation = -137.314248 kcal Electronic energy + Delta-G solvation = -28494.557454 eV Core-core repulsion = 24262.100459 eV Total energy + Delta-G solvation = -4232.456995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62034 -40.42354 -40.15292 -38.26692 -37.36779 -36.22423 -35.75260 -33.83410 -33.27924 -32.52411 -29.94010 -29.30666 -27.81479 -26.92389 -26.11981 -23.86242 -22.61034 -22.11864 -21.52876 -20.96895 -20.64119 -19.84315 -18.45806 -17.88147 -17.84289 -17.16656 -17.09110 -16.62590 -16.59197 -16.55202 -16.05019 -16.00916 -15.55903 -15.26844 -15.01502 -14.93543 -14.72683 -14.52359 -14.30274 -13.75120 -13.59325 -13.51442 -13.46879 -13.26566 -13.02793 -12.94920 -12.76705 -12.70658 -12.51573 -12.38597 -12.31923 -12.12888 -12.10952 -11.84696 -11.64447 -11.44663 -10.89195 -10.60201 -10.26907 -10.02743 -9.99002 -9.97287 -9.21110 -8.45294 -5.94152 1.38788 1.42320 1.55287 1.64432 1.77040 2.06561 2.19668 2.31081 2.53063 2.81929 3.21541 3.43234 3.46029 3.57295 3.79301 3.96200 3.98673 4.09163 4.15380 4.22675 4.32071 4.39959 4.43507 4.49539 4.54135 4.54775 4.60566 4.64116 4.70877 4.75947 4.81108 4.82493 4.96574 5.09724 5.14984 5.19508 5.25057 5.29614 5.42191 5.52145 5.88788 6.01433 6.07667 6.09425 6.21735 6.61903 6.64272 7.14131 7.35810 7.41599 7.57776 8.13433 8.72169 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.040994 B = 0.001381 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.865310 B =20271.783552 C =20502.619075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.535 5.535 3 C 0.057 3.943 4 C -0.110 4.110 5 C 0.129 3.871 6 N -0.723 5.723 7 C 0.487 3.513 8 O -0.566 6.566 9 C -0.115 4.115 10 C -0.111 4.111 11 H 0.091 0.909 12 C -0.118 4.118 13 C 0.094 3.906 14 N -0.733 5.733 15 C 0.500 3.500 16 O -0.571 6.571 17 C 0.056 3.944 18 C 0.442 3.558 19 O -0.613 6.613 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.272 1.272 29 H 0.025 0.975 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.416 0.584 39 H 0.147 0.853 40 H 0.117 0.883 41 H 0.128 0.872 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.411 0.589 46 H 0.064 0.936 47 H 0.108 0.892 48 H 0.395 0.605 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.667 28.144 21.714 35.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.259 5.259 3 C -0.071 4.071 4 C -0.148 4.148 5 C 0.004 3.996 6 N -0.376 5.376 7 C 0.274 3.726 8 O -0.444 6.444 9 C -0.155 4.155 10 C -0.133 4.133 11 H 0.109 0.891 12 C -0.156 4.156 13 C -0.029 4.029 14 N -0.388 5.388 15 C 0.286 3.714 16 O -0.448 6.448 17 C -0.075 4.075 18 C 0.229 3.771 19 O -0.499 6.499 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.253 0.747 39 H 0.165 0.835 40 H 0.135 0.865 41 H 0.146 0.854 42 H 0.110 0.890 43 H 0.119 0.881 44 H 0.111 0.889 45 H 0.249 0.751 46 H 0.082 0.918 47 H 0.126 0.874 48 H 0.229 0.771 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.228 27.903 21.465 35.352 hybrid contribution -0.527 -0.373 -1.767 1.881 sum -3.755 27.530 19.699 34.059 Atomic orbital electron populations 1.22472 0.86896 1.02250 1.00701 1.61528 1.08876 1.13376 1.42136 1.22097 1.00807 0.86850 0.97368 1.21599 1.02045 0.92991 0.98189 1.21082 0.99842 0.92374 0.86306 1.45907 1.58152 1.13669 1.19922 1.21510 0.79200 0.81712 0.90177 1.90842 1.40778 1.64649 1.48140 1.21644 1.04711 0.93693 0.95463 1.21744 1.01198 0.94251 0.96137 0.89076 1.22825 0.97329 1.00607 0.94811 1.22430 0.99118 1.02789 0.78532 1.46425 1.40349 1.41759 1.10309 1.21482 0.80567 0.80881 0.88461 1.90793 1.67957 1.68595 1.17504 1.21749 1.02084 0.90345 0.93370 1.20743 0.83718 0.88699 0.83905 1.90453 1.45134 1.81428 1.32874 1.41948 1.50051 1.07094 1.22198 1.19678 1.34408 0.84010 1.08130 0.90189 1.26042 0.96230 1.04371 0.94668 1.69677 1.38161 1.37206 1.11251 0.84918 0.78186 0.76745 0.78423 1.19669 1.19632 1.19680 0.95674 0.92634 0.89649 0.94165 0.89923 0.90013 0.90427 0.93310 0.92384 0.74705 0.83520 0.86485 0.85409 0.89026 0.88076 0.88936 0.75113 0.91778 0.87351 0.77110 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 8.96 127.69 1.14 1.92 16 2 N -0.53 -17.15 4.50 -927.05 -4.17 -21.32 16 3 C 0.06 1.35 4.96 86.30 0.43 1.78 16 4 C -0.11 -2.08 5.25 30.59 0.16 -1.92 16 5 C 0.13 2.56 5.67 86.38 0.49 3.05 16 6 N -0.72 -11.48 5.56 -463.05 -2.57 -14.05 16 7 C 0.49 9.69 7.62 87.66 0.67 10.36 16 8 O -0.57 -18.11 13.82 17.58 0.24 -17.86 16 9 C -0.12 -0.98 5.11 29.85 0.15 -0.82 16 10 C -0.11 -1.30 2.55 -10.80 -0.03 -1.33 16 11 H 0.09 1.48 7.96 -2.39 -0.02 1.46 16 12 C -0.12 -0.14 6.73 31.72 0.21 0.07 16 13 C 0.09 0.12 7.79 86.91 0.68 0.79 16 14 N -0.73 -7.83 6.24 -459.45 -2.87 -10.70 16 15 C 0.50 10.15 7.42 87.90 0.65 10.80 16 16 O -0.57 -19.27 16.02 17.59 0.28 -18.99 16 17 C 0.06 1.98 5.45 85.56 0.47 2.44 16 18 C 0.44 21.28 7.47 87.66 0.66 21.94 16 19 O -0.61 -33.78 13.91 -3.08 -0.04 -33.82 16 20 N -0.58 -29.94 5.29 -306.99 -1.62 -31.57 16 21 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 24 N -0.92 -50.32 13.05 21.66 0.28 -50.03 16 25 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 28 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 29 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 2.22 5.82 -2.39 -0.01 2.20 16 31 H 0.08 2.20 6.47 -2.39 -0.02 2.19 16 32 H 0.04 0.92 8.12 -2.38 -0.02 0.90 16 33 H 0.08 1.86 7.93 -2.39 -0.02 1.84 16 34 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.08 1.36 6.55 -2.39 -0.02 1.35 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.42 3.67 8.47 -92.71 -0.79 2.88 16 39 H 0.15 0.09 8.13 -2.39 -0.02 0.07 16 40 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.13 -0.64 7.89 -2.39 -0.02 -0.66 16 42 H 0.09 0.06 8.14 -2.38 -0.02 0.04 16 43 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 45 H 0.41 3.84 8.96 -92.71 -0.83 3.00 16 46 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 47 H 0.11 3.42 7.93 -2.39 -0.02 3.40 16 48 H 0.40 19.64 7.90 -92.71 -0.73 18.90 16 49 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -89.54 400.29 -2.84 -92.37 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -1.35 Total: 30.16 kcal Atomic # 6 Polarization: 23.63 SS G_CDS: 6.96 Total: 30.59 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -10.95 Total: -127.66 kcal Atomic # 8 Polarization: -71.15 SS G_CDS: 0.48 Total: -70.67 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -89.54 -2.84 -92.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731246241.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.939 kcal (2) G-P(sol) polarization free energy of solvation -89.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds