Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99866 * 2 1 4 4 C 1.53003 * 109.47167 * 66.04813 * 3 2 1 5 5 C 1.52996 * 109.47301 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 4 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 H 1.09004 * 109.29334 * 320.00335 * 9 7 6 11 11 C 1.52918 * 109.29941 * 79.58215 * 9 7 6 12 12 C 1.53267 * 108.71209 * 171.26385 * 11 9 7 13 13 C 1.53070 * 108.25106 * 292.18468 * 12 11 9 14 14 C 1.50181 * 109.88602 * 48.96518 * 13 12 11 15 15 O 1.21278 * 118.24293 * 162.39511 * 14 13 12 16 16 N 1.33355 * 123.51167 * 342.41928 * 14 13 12 17 17 C 1.46901 * 110.99851 * 236.04710 * 2 1 3 18 18 C 1.50697 * 109.47149 * 293.95428 * 17 2 1 19 19 O 1.21292 * 119.99933 * 0.02562 * 18 17 2 20 20 N 1.34776 * 120.00129 * 179.97438 * 18 17 2 21 21 C 1.37098 * 120.00179 * 179.97438 * 20 18 17 22 22 H 1.07992 * 119.99803 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99631 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00671 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99762 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46845 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47141 * 120.00338 * 25 23 21 28 28 H 1.48499 * 109.47082 * 240.00555 * 25 23 21 29 29 H 1.08999 * 109.46948 * 59.99306 * 1 2 3 30 30 H 1.08997 * 109.47246 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46706 * 300.00118 * 1 2 3 32 32 H 1.08990 * 109.47361 * 306.04764 * 3 2 1 33 33 H 1.09002 * 109.46984 * 186.04141 * 3 2 1 34 34 H 1.09004 * 109.47038 * 59.99597 * 4 3 2 35 35 H 1.09000 * 109.46939 * 300.00250 * 4 3 2 36 36 H 1.09004 * 109.47066 * 60.00027 * 5 4 3 37 37 H 1.08994 * 109.46974 * 300.00175 * 5 4 3 38 38 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 39 39 H 1.09000 * 109.60832 * 290.82846 * 11 9 7 40 40 H 1.09007 * 109.60137 * 51.31344 * 11 9 7 41 41 H 1.09010 * 109.70891 * 172.54179 * 12 11 9 42 42 H 1.08994 * 109.84767 * 51.91511 * 12 11 9 43 43 H 1.09001 * 109.40420 * 288.84681 * 13 12 11 44 44 H 1.08990 * 109.40663 * 169.09542 * 13 12 11 45 45 H 0.96994 * 117.94690 * 182.24428 * 16 14 13 46 46 H 1.08996 * 109.46994 * 53.95770 * 17 2 1 47 47 H 1.09000 * 109.46860 * 173.94962 * 17 2 1 48 48 H 0.97003 * 119.99511 * 0.02562 * 20 18 17 49 49 H 0.96999 * 120.00854 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 1.3183 5 6 2.1803 3.4856 1.3186 6 7 1.8313 4.1426 2.5806 7 6 2.2179 5.4135 2.8082 8 8 2.8504 6.0150 1.9661 9 6 1.8643 6.0874 4.1089 10 1 0.8480 5.8130 4.3920 11 6 2.8342 5.6258 5.1973 12 6 2.6059 6.4757 6.4521 13 6 3.0513 7.9083 6.1484 14 6 2.4515 8.3653 4.8496 15 8 2.4271 9.5551 4.6158 16 7 1.9437 7.5328 3.9399 17 6 1.9955 -0.7660 -1.1376 18 6 1.6369 -2.2204 -0.9729 19 8 1.0047 -2.5831 -0.0035 20 7 2.0180 -3.1179 -1.9033 21 6 1.6922 -4.4412 -1.7532 22 1 1.1300 -4.7642 -0.8897 23 6 2.0847 -5.3663 -2.7128 24 7 2.7684 -4.9732 -3.7638 25 14 1.6402 -7.1692 -2.5087 26 1 0.8731 -7.3505 -1.2501 27 1 0.8120 -7.6083 -3.6603 28 1 2.8819 -7.9819 -2.4534 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.5612 1.9274 -0.8308 33 1 3.0798 1.3444 -0.1082 34 1 2.0659 1.5015 2.1492 35 1 0.5472 2.0844 1.4266 36 1 1.7463 4.0418 0.4877 37 1 3.2645 3.4582 1.2105 38 1 1.3257 3.6615 3.2543 39 1 2.6496 4.5773 5.4311 40 1 3.8599 5.7502 4.8498 41 1 3.1936 6.0762 7.2787 42 1 1.5486 6.4685 6.7166 43 1 4.1385 7.9420 6.0766 44 1 2.7221 8.5678 6.9512 45 1 1.6064 7.9131 3.1138 46 1 1.5612 -0.3872 -2.0628 47 1 3.0797 -0.6610 -1.1757 48 1 2.5233 -2.8277 -2.6788 49 1 3.0427 -5.6191 -4.4335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731247419.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -111.799753 kcal Electronic energy + Delta-G solvation = -28493.096710 eV Core-core repulsion = 24261.746107 eV Total energy + Delta-G solvation = -4231.350603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.23627 -39.69085 -38.71713 -37.12629 -36.69414 -35.41971 -33.89543 -33.54897 -32.02638 -31.25795 -30.30513 -27.92615 -26.85928 -25.59412 -24.63530 -23.40468 -22.80030 -21.42986 -20.65062 -19.72510 -19.18754 -18.23617 -17.85321 -17.51398 -16.92847 -16.26331 -16.21722 -15.76485 -15.58632 -15.28619 -15.04270 -14.68314 -14.65582 -14.49852 -14.33030 -14.16954 -13.95856 -13.65387 -13.43088 -13.37404 -12.64138 -12.44463 -12.21486 -12.13103 -11.94858 -11.79799 -11.72656 -11.65282 -11.50993 -11.30655 -11.29364 -10.96504 -10.81544 -10.63305 -10.36284 -10.24843 -10.16015 -9.59299 -9.51714 -9.50884 -8.49241 -8.00742 -7.89709 -6.43944 -3.84871 2.00616 2.13002 2.48731 2.91350 3.14371 3.25151 3.31969 3.87010 3.89610 3.94598 3.97684 4.01689 4.15060 4.21301 4.35876 4.54236 4.72089 4.78164 4.83933 4.95826 5.04414 5.05242 5.07050 5.22483 5.22766 5.24273 5.31987 5.40722 5.48780 5.51835 5.63956 5.68814 5.84110 5.89096 5.93512 5.97810 6.04136 6.25528 6.25605 6.50613 6.79170 6.96884 7.21134 7.33784 7.53181 7.65266 7.75860 8.04339 8.59463 9.15972 9.52268 10.03868 10.73822 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.036771 B = 0.001392 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.292116 B =20113.000671 C =20403.395112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.519 5.519 3 C 0.057 3.943 4 C -0.127 4.127 5 C 0.119 3.881 6 N -0.722 5.722 7 C 0.500 3.500 8 O -0.527 6.527 9 C 0.126 3.874 10 H 0.101 0.899 11 C -0.129 4.129 12 C -0.122 4.122 13 C -0.138 4.138 14 C 0.524 3.476 15 O -0.553 6.553 16 N -0.701 5.701 17 C 0.046 3.954 18 C 0.444 3.556 19 O -0.578 6.578 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.014 0.986 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.404 0.596 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.405 0.595 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.392 0.608 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.114 21.257 16.830 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.242 5.242 3 C -0.072 4.072 4 C -0.165 4.165 5 C -0.005 4.005 6 N -0.374 5.374 7 C 0.284 3.716 8 O -0.402 6.402 9 C 0.017 3.983 10 H 0.118 0.882 11 C -0.167 4.167 12 C -0.159 4.159 13 C -0.178 4.178 14 C 0.311 3.689 15 O -0.431 6.431 16 N -0.354 5.354 17 C -0.086 4.086 18 C 0.229 3.771 19 O -0.463 6.463 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.032 0.968 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.238 0.762 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.242 0.758 46 H 0.066 0.934 47 H 0.106 0.894 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.773 21.626 17.216 27.652 hybrid contribution -0.448 -0.617 -1.419 1.611 sum -1.222 21.009 15.796 26.313 Atomic orbital electron populations 1.22580 0.86857 1.04485 0.98861 1.61552 1.08678 1.11157 1.42863 1.22002 1.00498 0.89025 0.95634 1.21779 1.01806 0.93269 0.99694 1.21399 1.00896 0.92839 0.85323 1.45971 1.57345 1.13628 1.20435 1.20770 0.79872 0.82204 0.88754 1.90776 1.38823 1.64206 1.46426 1.20897 1.01720 0.81768 0.93915 0.88184 1.21879 0.99745 1.01325 0.93800 1.21660 1.02912 0.93748 0.97615 1.21703 1.02853 0.98109 0.95111 1.20185 0.77019 0.85818 0.85841 1.90785 1.57161 1.16325 1.78854 1.45238 1.62973 1.05616 1.21622 1.21866 1.00701 0.94167 0.91841 1.19729 0.85476 0.86645 0.85234 1.90478 1.43956 1.80157 1.31680 1.41881 1.49403 1.07391 1.21424 1.19746 1.32943 0.82271 1.07890 0.87846 1.25259 0.96809 1.00576 0.95288 1.69613 1.38096 1.35692 1.10882 0.85806 0.78213 0.81937 0.78416 1.19221 1.20791 1.20745 0.96795 0.88594 0.92125 0.94872 0.90569 0.90056 0.91007 0.91301 0.91035 0.76173 0.88739 0.89942 0.89610 0.90546 0.87916 0.87810 0.75838 0.93443 0.89368 0.77492 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.96 60.07 0.54 0.84 16 2 N -0.52 -7.97 4.50 -244.37 -1.10 -9.07 16 3 C 0.06 0.63 4.96 -3.82 -0.02 0.62 16 4 C -0.13 -1.06 5.25 -26.73 -0.14 -1.20 16 5 C 0.12 0.92 5.67 -4.04 -0.02 0.89 16 6 N -0.72 -4.26 5.56 -60.30 -0.33 -4.60 16 7 C 0.50 3.84 6.98 -10.98 -0.08 3.76 16 8 O -0.53 -6.49 16.39 5.55 0.09 -6.40 16 9 C 0.13 0.62 3.46 -69.53 -0.24 0.38 16 10 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 11 C -0.13 -0.42 5.27 -26.64 -0.14 -0.56 16 12 C -0.12 -0.30 6.04 -26.56 -0.16 -0.47 16 13 C -0.14 -0.68 6.02 -28.10 -0.17 -0.84 16 14 C 0.52 4.67 7.71 -11.87 -0.09 4.58 16 15 O -0.55 -7.46 17.78 5.56 0.10 -7.36 16 16 N -0.70 -5.34 4.79 -55.99 -0.27 -5.61 16 17 C 0.05 0.78 5.45 -4.98 -0.03 0.75 16 18 C 0.44 10.17 7.47 -10.99 -0.08 10.09 16 19 O -0.58 -15.09 13.91 5.55 0.08 -15.01 16 20 N -0.56 -14.01 5.29 -10.97 -0.06 -14.07 16 21 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.22 13.05 55.50 0.72 -23.49 16 25 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 1.80 5.82 -51.93 -0.30 1.50 16 31 H 0.06 0.75 6.47 -51.93 -0.34 0.42 16 32 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.57 6.55 -51.93 -0.34 0.23 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.40 1.26 8.47 -40.82 -0.35 0.91 16 39 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 41 H 0.09 0.10 8.14 -51.92 -0.42 -0.32 16 42 H 0.08 0.14 8.13 -51.93 -0.42 -0.28 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.40 3.50 8.45 -40.82 -0.34 3.16 16 46 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 47 H 0.09 1.36 7.93 -51.93 -0.41 0.95 16 48 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 49 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -36.29 401.32 -8.44 -44.72 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -7.82 Total: 8.16 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -0.87 Total: 11.00 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -1.04 Total: -56.85 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: 0.27 Total: -28.77 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.29 -8.44 -44.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731247419.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.076 kcal (2) G-P(sol) polarization free energy of solvation -36.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds