Wall clock time and date at job start Sat Apr 11 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99995 * 2 1 4 4 C 1.52997 * 109.47053 * 66.04702 * 3 2 1 5 5 C 1.53001 * 109.47019 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47143 * 179.97438 * 5 4 3 7 7 C 1.34770 * 119.99993 * 179.97438 * 6 5 4 8 8 O 1.21287 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00262 * 180.02562 * 7 6 5 10 10 H 1.09003 * 110.21255 * 319.30554 * 9 7 6 11 11 C 1.54479 * 110.24596 * 81.22758 * 9 7 6 12 12 C 1.54761 * 101.70458 * 144.36398 * 11 9 7 13 13 C 1.51289 * 104.23410 * 335.30793 * 12 11 9 14 14 O 1.21277 * 124.94405 * 196.21124 * 13 12 11 15 15 N 1.34417 * 110.11292 * 16.18999 * 13 12 11 16 16 C 1.46505 * 124.34724 * 180.43099 * 15 13 12 17 17 C 1.46897 * 110.99814 * 236.04544 * 2 1 3 18 18 C 1.50694 * 109.47330 * 293.95439 * 17 2 1 19 19 O 1.21299 * 120.00004 * 0.02562 * 18 17 2 20 20 N 1.34777 * 120.00346 * 179.97438 * 18 17 2 21 21 C 1.37099 * 120.00249 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00067 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99699 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00513 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99400 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47582 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47066 * 120.00400 * 25 23 21 28 28 H 1.48506 * 109.47019 * 239.99788 * 25 23 21 29 29 H 1.08992 * 109.47459 * 183.95199 * 1 2 3 30 30 H 1.09004 * 109.47040 * 303.95350 * 1 2 3 31 31 H 1.09000 * 109.47033 * 63.95302 * 1 2 3 32 32 H 1.09002 * 109.46783 * 186.04686 * 3 2 1 33 33 H 1.09002 * 109.46955 * 306.04307 * 3 2 1 34 34 H 1.09002 * 109.47313 * 299.99660 * 4 3 2 35 35 H 1.08994 * 109.47205 * 59.99990 * 4 3 2 36 36 H 1.09002 * 109.46818 * 299.99985 * 5 4 3 37 37 H 1.08994 * 109.47122 * 59.99961 * 5 4 3 38 38 H 0.96997 * 119.99681 * 359.97438 * 6 5 4 39 39 H 1.08996 * 110.97261 * 262.54178 * 11 9 7 40 40 H 1.09009 * 110.96781 * 26.30241 * 11 9 7 41 41 H 1.08998 * 110.52207 * 216.59561 * 12 11 9 42 42 H 1.09001 * 110.52960 * 94.02634 * 12 11 9 43 43 H 1.08997 * 109.47008 * 269.97332 * 16 15 13 44 44 H 1.08997 * 109.47131 * 29.97650 * 16 15 13 45 45 H 1.08999 * 109.47014 * 149.97443 * 16 15 13 46 46 H 1.09009 * 109.47296 * 53.95365 * 17 2 1 47 47 H 1.09002 * 109.47055 * 173.95064 * 17 2 1 48 48 H 0.96996 * 119.99759 * 0.02562 * 20 18 17 49 49 H 0.97003 * 120.00109 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1804 3.4856 1.3185 6 7 1.8314 4.1427 2.5806 7 6 2.2137 5.4152 2.8060 8 8 2.8463 6.0167 1.9639 9 6 1.8552 6.0910 4.1044 10 1 0.8362 5.8340 4.3939 11 6 2.8468 5.6769 5.2141 12 6 2.9649 6.9845 6.0335 13 6 2.6095 8.0750 5.0470 14 8 2.8455 9.2547 5.2008 15 7 1.9946 7.5462 3.9751 16 6 1.5246 8.3227 2.8251 17 6 1.9954 -0.7660 -1.1376 18 6 1.6369 -2.2204 -0.9729 19 8 1.0046 -2.5831 -0.0034 20 7 2.0179 -3.1180 -1.9033 21 6 1.6922 -4.4412 -1.7531 22 1 1.1300 -4.7643 -0.8895 23 6 2.0856 -5.3666 -2.7121 24 7 2.7701 -4.9736 -3.7627 25 14 1.6411 -7.1694 -2.5079 26 1 0.8729 -7.3505 -1.2500 27 1 0.8139 -7.6089 -3.6601 28 1 2.8828 -7.9821 -2.4515 29 1 -0.3634 -1.0251 0.0708 30 1 -0.3633 0.5740 0.8525 31 1 -0.3633 0.4513 -0.9233 32 1 3.0798 1.3444 -0.1083 33 1 1.5612 1.9274 -0.8310 34 1 0.5473 2.0845 1.4265 35 1 2.0659 1.5016 2.1491 36 1 3.2647 3.4581 1.2105 37 1 1.7465 4.0418 0.4876 38 1 1.3251 3.6618 3.2539 39 1 2.4375 4.8698 5.8217 40 1 3.8105 5.3940 4.7905 41 1 3.9838 7.1166 6.3974 42 1 2.2612 6.9789 6.8659 43 1 0.4974 8.6434 2.9986 44 1 2.1610 9.1977 2.6930 45 1 1.5657 7.7048 1.9282 46 1 1.5611 -0.3872 -2.0629 47 1 3.0797 -0.6611 -1.1757 48 1 2.5233 -2.8278 -2.6787 49 1 3.0444 -5.6196 -4.4324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731260516.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:42 Heat of formation + Delta-G solvation = -123.235694 kcal Electronic energy + Delta-G solvation = -28644.680738 eV Core-core repulsion = 24412.834235 eV Total energy + Delta-G solvation = -4231.846503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.96643 -40.40102 -40.18080 -38.28569 -37.34690 -36.26688 -35.77395 -33.81151 -33.26719 -32.62784 -29.75998 -29.13097 -27.65125 -27.39149 -26.43442 -24.20748 -23.26354 -22.11744 -21.50142 -20.95254 -20.45800 -19.83220 -18.63896 -17.95084 -17.76644 -17.19561 -16.94436 -16.83690 -16.54570 -16.48632 -16.22246 -15.86952 -15.72379 -15.22059 -15.03190 -14.88652 -14.80156 -14.68708 -14.48859 -13.73243 -13.69604 -13.55408 -13.46002 -13.35706 -13.04251 -12.99463 -12.84854 -12.73092 -12.68605 -12.48588 -12.36471 -12.28344 -12.09752 -12.06691 -11.59916 -11.44338 -11.17330 -10.92670 -10.25803 -10.13602 -9.97787 -9.78415 -9.16960 -8.44788 -5.93208 1.37923 1.40280 1.43259 1.46089 1.57178 1.82396 2.08260 2.21127 2.30992 2.83209 3.22434 3.27137 3.40364 3.45944 3.70479 3.99494 4.00410 4.04926 4.10419 4.17947 4.29611 4.34343 4.40004 4.43463 4.51651 4.57748 4.60024 4.63943 4.68374 4.78111 4.80100 4.83513 4.83788 4.97974 5.04521 5.12831 5.24244 5.31651 5.33866 5.42856 5.44257 5.91039 5.98780 6.09881 6.26503 6.50490 6.63110 7.02127 7.15518 7.18336 7.59450 8.15175 8.72830 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.037847 B = 0.001417 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.646039 B =19754.507883 C =19988.139920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.536 5.536 3 C 0.056 3.944 4 C -0.113 4.113 5 C 0.128 3.872 6 N -0.707 5.707 7 C 0.504 3.496 8 O -0.575 6.575 9 C 0.112 3.888 10 H 0.145 0.855 11 C -0.111 4.111 12 C -0.143 4.143 13 C 0.502 3.498 14 O -0.584 6.584 15 N -0.607 5.607 16 C 0.092 3.908 17 C 0.056 3.944 18 C 0.442 3.558 19 O -0.613 6.613 20 N -0.577 5.577 21 C -0.331 4.331 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.272 1.272 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.024 0.976 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.421 0.579 39 H 0.146 0.854 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.137 0.863 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.395 0.605 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.823 21.158 15.604 26.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.260 5.260 3 C -0.072 4.072 4 C -0.151 4.151 5 C 0.004 3.996 6 N -0.359 5.359 7 C 0.290 3.710 8 O -0.454 6.454 9 C 0.005 3.995 10 H 0.162 0.838 11 C -0.149 4.149 12 C -0.183 4.183 13 C 0.292 3.708 14 O -0.465 6.465 15 N -0.340 5.340 16 C -0.049 4.049 17 C -0.075 4.075 18 C 0.229 3.771 19 O -0.499 6.499 20 N -0.214 5.214 21 C -0.460 4.460 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.198 1.198 28 H -0.197 1.197 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.258 0.742 39 H 0.164 0.836 40 H 0.097 0.903 41 H 0.129 0.871 42 H 0.155 0.845 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.126 0.874 48 H 0.229 0.771 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.481 21.649 15.904 26.977 hybrid contribution -0.240 -0.491 -1.518 1.613 sum -2.721 21.157 14.386 25.729 Atomic orbital electron populations 1.22486 0.86887 1.02460 1.00575 1.61524 1.08869 1.13539 1.42074 1.22105 1.00792 0.86797 0.97534 1.21627 1.02285 0.93097 0.98118 1.21183 1.00199 0.92368 0.85890 1.45825 1.56829 1.13010 1.20269 1.21071 0.78882 0.82185 0.88859 1.90734 1.41204 1.65332 1.48103 1.21978 1.04447 0.79623 0.93462 0.83799 1.22749 0.99117 0.98552 0.94433 1.22434 1.06334 0.91604 0.97936 1.21788 0.75662 0.89561 0.83760 1.90701 1.56951 1.19629 1.79209 1.48070 1.58432 1.07728 1.19748 1.21632 0.99415 0.95826 0.88065 1.21750 1.02079 0.90226 0.93431 1.20797 0.83653 0.88789 0.83846 1.90456 1.45051 1.81463 1.32921 1.41961 1.50164 1.07091 1.22197 1.19702 1.34271 0.84053 1.08013 0.90209 1.26022 0.96314 1.04283 0.94710 1.69679 1.38291 1.37073 1.11272 0.84876 0.78201 0.77034 0.78257 1.19681 1.19765 1.19741 0.92847 0.89271 0.95765 0.89993 0.93904 0.90103 0.90035 0.92013 0.92044 0.74155 0.83606 0.90336 0.87073 0.84499 0.91132 0.92602 0.90320 0.91746 0.87353 0.77117 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.01 127.69 1.15 1.82 16 2 N -0.54 -15.38 4.50 -927.03 -4.17 -19.55 16 3 C 0.06 1.07 4.96 86.30 0.43 1.50 16 4 C -0.11 -1.51 5.26 30.59 0.16 -1.35 16 5 C 0.13 1.62 5.67 86.38 0.49 2.11 16 6 N -0.71 -6.14 5.56 -463.06 -2.57 -8.71 16 7 C 0.50 6.71 6.56 87.66 0.58 7.29 16 8 O -0.57 -13.45 14.51 -3.05 -0.04 -13.49 16 9 C 0.11 0.86 3.70 44.70 0.17 1.02 16 10 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 11 C -0.11 -0.36 6.69 31.70 0.21 -0.15 16 12 C -0.14 -1.00 6.86 30.64 0.21 -0.79 16 13 C 0.50 9.27 8.02 87.90 0.71 9.98 16 14 O -0.58 -16.64 17.59 -3.02 -0.05 -16.69 16 15 N -0.61 -9.52 3.01 -823.08 -2.47 -11.99 16 16 C 0.09 1.58 10.42 127.77 1.33 2.91 16 17 C 0.06 1.85 5.45 85.56 0.47 2.32 16 18 C 0.44 20.37 7.51 87.65 0.66 21.03 16 19 O -0.61 -32.61 13.89 -3.09 -0.04 -32.65 16 20 N -0.58 -29.05 5.29 -306.98 -1.62 -30.67 16 21 C -0.33 -18.49 9.68 84.04 0.81 -17.68 16 22 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 24 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 25 Si 0.99 42.33 29.55 68.60 2.03 44.36 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 29 H 0.05 2.00 5.88 -2.39 -0.01 1.98 16 30 H 0.09 1.94 6.30 -2.38 -0.02 1.93 16 31 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 1.50 7.93 -2.39 -0.02 1.48 16 33 H 0.04 0.76 8.12 -2.39 -0.02 0.74 16 34 H 0.08 0.96 6.47 -2.39 -0.02 0.95 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.42 0.85 8.47 -92.71 -0.79 0.06 16 39 H 0.15 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.08 0.49 7.91 -2.38 -0.02 0.47 16 41 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 1.15 7.93 -2.39 -0.02 1.13 16 45 H 0.08 1.44 5.94 -2.39 -0.01 1.43 16 46 H 0.06 1.91 8.12 -2.38 -0.02 1.89 16 47 H 0.11 3.13 7.93 -2.39 -0.02 3.11 16 48 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 49 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -83.20 401.21 -1.37 -84.58 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -0.54 Total: 24.07 kcal Atomic # 6 Polarization: 21.91 SS G_CDS: 7.83 Total: 29.75 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -10.56 Total: -119.92 kcal Atomic # 8 Polarization: -62.69 SS G_CDS: -0.14 Total: -62.83 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -83.20 -1.37 -84.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731260516.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.657 kcal (2) G-P(sol) polarization free energy of solvation -83.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds