Wall clock time and date at job start Sat Apr 11 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99919 * 2 1 4 4 C 1.53006 * 109.46626 * 293.94915 * 3 2 1 5 5 N 1.46500 * 109.46998 * 180.02562 * 4 3 2 6 6 C 1.34769 * 120.00237 * 180.02562 * 5 4 3 7 7 O 1.21282 * 119.99854 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00461 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47592 * 179.97438 * 8 6 5 10 10 H 1.08997 * 110.43466 * 307.54444 * 9 8 6 11 11 C 1.54624 * 110.48740 * 184.99886 * 9 8 6 12 12 C 1.54479 * 101.76512 * 216.52400 * 11 9 8 13 13 N 1.46765 * 105.47419 * 25.41675 * 12 11 9 14 14 C 1.46502 * 124.35047 * 162.98421 * 13 12 11 15 15 C 1.34423 * 111.29787 * 342.98213 * 13 12 11 16 16 O 1.21278 * 124.94069 * 180.43850 * 15 13 12 17 17 C 1.46906 * 110.99726 * 123.94506 * 2 1 3 18 18 C 1.50705 * 109.46871 * 66.05255 * 17 2 1 19 19 O 1.21290 * 119.99832 * 359.97438 * 18 17 2 20 20 N 1.34774 * 119.99951 * 179.97438 * 18 17 2 21 21 C 1.37101 * 119.99845 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99654 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99894 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99697 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99988 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46892 * 60.00196 * 25 23 21 27 27 H 1.48500 * 109.47214 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47246 * 300.00244 * 25 23 21 29 29 H 1.08997 * 109.46955 * 60.00491 * 1 2 3 30 30 H 1.09001 * 109.46689 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47393 * 300.00487 * 1 2 3 32 32 H 1.09000 * 109.47263 * 173.95221 * 3 2 1 33 33 H 1.09001 * 109.47582 * 53.94500 * 3 2 1 34 34 H 1.08993 * 109.46955 * 300.00347 * 4 3 2 35 35 H 1.09000 * 109.47050 * 60.00176 * 4 3 2 36 36 H 0.97010 * 119.99909 * 359.97438 * 5 4 3 37 37 H 1.08996 * 109.47077 * 300.00146 * 8 6 5 38 38 H 1.09004 * 109.46818 * 59.99313 * 8 6 5 39 39 H 1.08995 * 110.97373 * 334.64622 * 11 9 8 40 40 H 1.09009 * 110.96781 * 98.37160 * 11 9 8 41 41 H 1.09001 * 110.24562 * 144.41745 * 12 11 9 42 42 H 1.09000 * 110.24871 * 266.32828 * 12 11 9 43 43 H 1.08999 * 109.47111 * 90.00218 * 14 13 12 44 44 H 1.08997 * 109.47083 * 210.00191 * 14 13 12 45 45 H 1.09000 * 109.46643 * 329.99843 * 14 13 12 46 46 H 1.08999 * 109.46669 * 186.04629 * 17 2 1 47 47 H 1.08990 * 109.47425 * 306.05171 * 17 2 1 48 48 H 0.96996 * 120.00113 * 0.02562 * 20 18 17 49 49 H 0.96995 * 119.99682 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0573 -1.3184 5 7 2.1570 3.4249 -1.3187 6 6 1.9558 4.2238 -2.3852 7 8 1.3401 3.8106 -3.3450 8 6 2.4968 5.6304 -2.3859 9 6 2.1328 6.3163 -3.7041 10 1 2.4435 5.7037 -4.5504 11 6 2.7826 7.7172 -3.7827 12 6 1.6872 8.5324 -4.5053 13 7 0.4264 7.8413 -4.2108 14 6 -0.9016 8.4360 -4.3815 15 6 0.6467 6.5927 -3.7644 16 8 -0.2199 5.8025 -3.4555 17 6 1.9955 -0.7658 1.1378 18 6 1.6370 -2.2204 0.9731 19 8 1.0048 -2.5831 0.0036 20 7 2.0189 -3.1180 1.9031 21 6 1.6923 -4.4411 1.7535 22 1 1.1294 -4.7641 0.8903 23 6 2.0865 -5.3666 2.7121 24 7 2.7719 -4.9735 3.7622 25 14 1.6422 -7.1695 2.5080 26 1 2.2331 -7.6851 1.2470 27 1 2.1748 -7.9438 3.6577 28 1 0.1650 -7.3126 2.4572 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.0798 1.3445 0.1083 33 1 1.5611 1.9275 0.8308 34 1 2.0659 1.5013 -2.1492 35 1 0.5472 2.0843 -1.4267 36 1 2.6492 3.7555 -0.5509 37 1 2.0636 6.1867 -1.5547 38 1 3.5812 5.6026 -2.2784 39 1 2.9719 8.1159 -2.7861 40 1 3.7003 7.6892 -4.3702 41 1 1.6583 9.5511 -4.1186 42 1 1.8714 8.5424 -5.5796 43 1 -1.2641 8.2324 -5.3891 44 1 -1.5891 8.0045 -3.6540 45 1 -0.8396 9.5134 -4.2282 46 1 3.0797 -0.6609 1.1758 47 1 1.5611 -0.3871 2.0628 48 1 2.5241 -2.8278 2.6786 49 1 3.0467 -5.6195 4.4315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731774212.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:37 Heat of formation + Delta-G solvation = -122.905032 kcal Electronic energy + Delta-G solvation = -28898.493349 eV Core-core repulsion = 24666.661185 eV Total energy + Delta-G solvation = -4231.832164 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.67461 -40.50907 -40.15552 -38.16788 -37.38224 -36.00093 -35.43151 -34.73482 -33.27296 -31.39966 -30.14017 -29.06053 -27.87382 -27.10959 -26.31719 -24.94535 -22.48078 -22.29860 -21.54975 -20.96017 -20.18305 -19.84952 -18.26912 -17.81265 -17.54850 -17.44498 -17.15618 -16.86901 -16.55137 -16.31578 -16.21364 -15.86113 -15.53871 -15.22683 -15.04077 -14.76117 -14.63897 -14.46735 -14.22073 -13.98332 -13.78449 -13.45165 -13.39835 -13.23069 -13.17402 -13.03356 -12.93569 -12.69547 -12.57633 -12.55167 -12.41601 -12.29040 -12.14512 -12.07839 -11.79761 -11.45304 -10.90128 -10.56817 -10.28946 -10.02336 -9.98774 -9.65802 -9.25533 -8.45487 -5.93834 1.40096 1.41837 1.52547 1.62923 1.80933 2.07072 2.08050 2.15268 2.31860 2.92290 3.21368 3.39626 3.43594 3.52083 3.83034 3.86749 3.97890 4.07198 4.25502 4.25973 4.34359 4.36985 4.39540 4.45458 4.52645 4.53582 4.57989 4.61040 4.63477 4.67437 4.77812 4.82567 4.87516 4.90188 4.96224 5.13858 5.17889 5.26905 5.41977 5.48055 5.65386 5.85174 6.03995 6.15867 6.16511 6.62565 6.66012 7.14613 7.26560 7.42950 7.58124 8.14950 8.71618 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.039136 B = 0.001510 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.276642 B =18536.316001 C =18877.354372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.055 3.945 4 C 0.133 3.867 5 N -0.720 5.720 6 C 0.497 3.503 7 O -0.573 6.573 8 C -0.113 4.113 9 C -0.110 4.110 10 H 0.101 0.899 11 C -0.113 4.113 12 C 0.095 3.905 13 N -0.632 5.632 14 C 0.092 3.908 15 C 0.496 3.504 16 O -0.568 6.568 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.617 6.617 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.274 1.274 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.417 0.583 37 H 0.111 0.889 38 H 0.148 0.852 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.105 0.895 46 H 0.118 0.882 47 H 0.073 0.927 48 H 0.397 0.603 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.087 35.592 -8.750 37.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.073 4.073 4 C 0.008 3.992 5 N -0.374 5.374 6 C 0.284 3.716 7 O -0.451 6.451 8 C -0.153 4.153 9 C -0.132 4.132 10 H 0.119 0.881 11 C -0.151 4.151 12 C -0.026 4.026 13 N -0.367 5.367 14 C -0.050 4.050 15 C 0.284 3.716 16 O -0.446 6.446 17 C -0.070 4.070 18 C 0.226 3.774 19 O -0.503 6.503 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.199 1.199 27 H -0.193 1.193 28 H -0.199 1.199 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.255 0.745 37 H 0.129 0.871 38 H 0.166 0.834 39 H 0.125 0.875 40 H 0.139 0.861 41 H 0.124 0.876 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.123 0.877 46 H 0.135 0.865 47 H 0.091 0.909 48 H 0.231 0.769 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.924 34.362 -10.195 36.179 hybrid contribution -0.684 -0.852 1.172 1.603 sum 4.240 33.510 -9.023 34.961 Atomic orbital electron populations 1.22436 0.87181 1.02298 1.00311 1.61339 1.08670 1.13351 1.43122 1.22247 1.01969 0.87201 0.95839 1.20975 0.97987 0.82289 0.97997 1.45737 1.58180 1.13097 1.20416 1.21413 0.79200 0.88955 0.81982 1.90756 1.41417 1.76537 1.36341 1.21618 1.05312 0.90019 0.98330 1.21789 0.91690 0.99816 0.99864 0.88053 1.22785 0.98440 0.89862 1.03984 1.22410 0.81169 0.97714 1.01326 1.48451 1.08542 1.14477 1.65219 1.21614 0.82361 0.99846 1.01178 1.21559 0.92589 0.81435 0.75977 1.90754 1.52166 1.50853 1.50838 1.21743 1.02444 0.89869 0.92945 1.20837 0.83745 0.88928 0.83883 1.90477 1.45213 1.81493 1.33148 1.41901 1.50059 1.06949 1.22157 1.19615 1.34500 0.84184 1.08132 0.90532 1.25991 0.96238 1.04172 0.94674 1.69658 1.37978 1.37199 1.11144 0.85014 0.78533 0.76928 0.77997 1.19865 1.19320 1.19901 0.91498 0.92401 0.94728 0.87818 0.92290 0.93018 0.93921 0.74544 0.87109 0.83436 0.87453 0.86140 0.87588 0.90168 0.92908 0.93029 0.87698 0.86452 0.90941 0.76902 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 8.96 127.69 1.14 2.05 16 2 N -0.54 -18.12 4.50 -927.02 -4.17 -22.29 16 3 C 0.06 1.28 5.07 86.31 0.44 1.72 16 4 C 0.13 3.50 5.60 86.38 0.48 3.99 16 5 N -0.72 -13.99 5.56 -463.06 -2.57 -16.56 16 6 C 0.50 11.67 7.29 87.66 0.64 12.31 16 7 O -0.57 -20.47 14.05 17.44 0.24 -20.22 16 8 C -0.11 -1.29 5.09 29.85 0.15 -1.13 16 9 C -0.11 -1.48 2.54 -10.80 -0.03 -1.51 16 10 H 0.10 1.70 7.90 -2.39 -0.02 1.68 16 11 C -0.11 -0.27 6.70 31.65 0.21 -0.05 16 12 C 0.10 0.43 7.35 86.83 0.64 1.07 16 13 N -0.63 -9.24 3.33 -842.90 -2.81 -12.05 16 14 C 0.09 1.14 10.96 127.77 1.40 2.54 16 15 C 0.50 11.31 7.29 87.90 0.64 11.95 16 16 O -0.57 -20.01 15.20 17.45 0.27 -19.75 16 17 C 0.06 2.09 5.45 85.56 0.47 2.56 16 18 C 0.44 21.27 7.47 87.66 0.66 21.93 16 19 O -0.62 -35.20 13.91 -3.06 -0.04 -35.24 16 20 N -0.57 -29.69 5.29 -306.98 -1.62 -31.31 16 21 C -0.33 -19.30 9.68 84.04 0.81 -18.49 16 22 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 24 N -0.92 -49.68 13.05 21.66 0.28 -49.39 16 25 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 29 H 0.07 2.27 6.47 -2.39 -0.02 2.25 16 30 H 0.06 2.51 5.82 -2.39 -0.01 2.50 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.10 1.92 7.93 -2.39 -0.02 1.90 16 33 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.35 6.55 -2.39 -0.02 1.34 16 36 H 0.42 4.42 8.47 -92.70 -0.79 3.63 16 37 H 0.11 0.94 8.12 -2.39 -0.02 0.92 16 38 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.11 -0.15 7.91 -2.39 -0.02 -0.17 16 40 H 0.12 -0.27 8.14 -2.38 -0.02 -0.29 16 41 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.05 0.87 7.93 -2.39 -0.02 0.85 16 45 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.12 3.39 7.93 -2.39 -0.02 3.37 16 47 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 48 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 49 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -92.26 400.49 -0.82 -93.08 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -0.54 Total: 29.32 kcal Atomic # 6 Polarization: 30.67 SS G_CDS: 8.12 Total: 38.80 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -10.89 Total: -131.60 kcal Atomic # 8 Polarization: -75.67 SS G_CDS: 0.47 Total: -75.21 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -92.26 -0.82 -93.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731774212.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.826 kcal (2) G-P(sol) polarization free energy of solvation -92.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds