Wall clock time and date at job start Sat Apr 11 2020 06:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47336 * 2 1 4 4 C 1.46895 * 110.99753 * 59.18166 * 3 2 1 5 5 C 1.53004 * 109.47181 * 66.04535 * 4 3 2 6 6 N 1.46504 * 109.47183 * 179.97438 * 5 4 3 7 7 C 1.34772 * 119.99959 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00198 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00038 * 180.02562 * 7 6 5 10 10 C 1.52996 * 109.47401 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.21604 * 304.52566 * 10 9 7 12 12 C 1.54476 * 110.24968 * 182.50125 * 10 9 7 13 13 C 1.54629 * 101.76578 * 266.41615 * 12 10 9 14 14 C 1.51278 * 104.19628 * 335.19980 * 13 12 10 15 15 O 1.21284 * 124.94511 * 196.23471 * 14 13 12 16 16 N 1.34421 * 110.11756 * 16.25181 * 14 13 12 17 17 C 1.46900 * 111.00066 * 295.22997 * 3 2 1 18 18 C 1.50706 * 109.46864 * 288.23714 * 17 3 2 19 19 O 1.21292 * 119.99994 * 354.30332 * 18 17 3 20 20 N 1.34775 * 119.99521 * 174.29999 * 18 17 3 21 21 C 1.37102 * 119.99653 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99679 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00083 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00000 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00182 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47158 * 89.99626 * 25 23 21 27 27 H 1.48494 * 109.47611 * 209.99766 * 25 23 21 28 28 H 1.48502 * 109.47252 * 330.00097 * 25 23 21 29 29 H 1.08998 * 109.47543 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47011 * 299.98981 * 1 2 3 31 31 H 1.08999 * 109.47148 * 59.98600 * 1 2 3 32 32 H 1.09004 * 109.47084 * 239.99909 * 2 1 3 33 33 H 1.08996 * 109.46527 * 120.00353 * 2 1 3 34 34 H 1.08994 * 109.47509 * 306.04565 * 4 3 2 35 35 H 1.09000 * 109.47055 * 186.04332 * 4 3 2 36 36 H 1.09003 * 109.47048 * 59.99900 * 5 4 3 37 37 H 1.08995 * 109.47379 * 300.00047 * 5 4 3 38 38 H 0.97001 * 119.99903 * 0.02562 * 6 5 4 39 39 H 1.09000 * 109.47182 * 300.00007 * 9 7 6 40 40 H 1.08994 * 109.47302 * 60.00192 * 9 7 6 41 41 H 1.08996 * 110.97103 * 24.53363 * 12 10 9 42 42 H 1.08997 * 110.97526 * 148.29541 * 12 10 9 43 43 H 1.09003 * 110.48358 * 216.52148 * 13 12 10 44 44 H 1.08994 * 110.59917 * 93.93397 * 13 12 10 45 45 H 0.96996 * 124.35478 * 180.38785 * 16 14 13 46 46 H 1.08996 * 109.47046 * 48.23492 * 17 3 2 47 47 H 1.09000 * 109.47037 * 168.24014 * 17 3 2 48 48 H 0.96994 * 120.00359 * 0.02562 * 20 18 17 49 49 H 0.97000 * 119.99894 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5328 2.1154 1.1778 5 6 2.1474 1.5120 2.4423 6 7 1.6623 2.2409 3.6169 7 6 2.0727 1.8822 4.8495 8 8 2.8440 0.9564 4.9863 9 6 1.5732 2.6316 6.0577 10 6 2.1879 2.0283 7.3222 11 1 1.9755 0.9604 7.3717 12 6 1.6392 2.7431 8.5769 13 6 2.7118 3.8314 8.8142 14 6 3.9591 3.2701 8.1679 15 8 5.0857 3.6736 8.3655 16 7 3.6372 2.2592 7.3424 17 6 1.6441 2.0762 -1.2406 18 6 2.4642 1.5368 -2.3842 19 8 3.3516 0.7382 -2.1703 20 7 2.2113 1.9419 -3.6445 21 6 2.9570 1.4508 -4.6849 22 1 3.7473 0.7397 -4.4945 23 6 2.6967 1.8688 -5.9842 24 7 1.7355 2.7344 -6.2159 25 14 3.7132 1.2003 -7.4017 26 1 3.0725 -0.0293 -7.9336 27 1 3.7944 2.2210 -8.4773 28 1 5.0808 0.8776 -6.9213 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5140 -0.8898 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 0.4468 2.0388 1.2295 35 1 1.8197 3.1640 1.0991 36 1 3.2335 1.5886 2.3906 37 1 1.8606 0.4634 2.5210 38 1 1.0451 2.9812 3.5075 39 1 1.8604 3.6802 5.9793 40 1 0.4872 2.5553 6.1093 41 1 0.6663 3.1916 8.3762 42 1 1.5843 2.0585 9.4233 43 1 2.8709 3.9838 9.8817 44 1 2.4218 4.7665 8.3352 45 1 4.2801 1.7483 6.8261 46 1 0.5859 1.9107 -1.4426 47 1 1.8306 3.1446 -1.1320 48 1 1.5018 2.5808 -3.8155 49 1 1.5536 3.0259 -7.1230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731812285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:55 Heat of formation + Delta-G solvation = -136.827309 kcal Electronic energy + Delta-G solvation = -29070.521119 eV Core-core repulsion = 24838.085240 eV Total energy + Delta-G solvation = -4232.435879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.59893 -40.65066 -40.22877 -38.62910 -37.60633 -35.97992 -35.60596 -33.26533 -32.31962 -31.99777 -31.41899 -30.40082 -27.85479 -26.55929 -25.87440 -24.56885 -22.27113 -21.76290 -21.58192 -21.13285 -20.58613 -19.77109 -18.51363 -18.00388 -17.62886 -17.47546 -17.22987 -16.76509 -16.68720 -16.48396 -16.11194 -15.92342 -15.62044 -15.11632 -14.99650 -14.81709 -14.57022 -14.50287 -14.13846 -14.01516 -13.73986 -13.65477 -13.43799 -13.38505 -13.06197 -12.96910 -12.85932 -12.75124 -12.47988 -12.41114 -12.17461 -12.14253 -12.09452 -11.78731 -11.66950 -11.41861 -10.98149 -10.85695 -10.30898 -10.13894 -10.06962 -9.98519 -9.14367 -8.45825 -5.93870 1.37358 1.41127 1.53451 1.58634 1.69695 2.05353 2.09900 2.30845 2.48219 2.91558 3.21238 3.42774 3.47226 3.62088 3.79047 3.83758 4.01593 4.05705 4.15588 4.18673 4.28327 4.31865 4.41168 4.44301 4.49068 4.53988 4.59072 4.60429 4.70036 4.87660 4.88332 4.88827 4.99209 5.03877 5.12742 5.15712 5.24107 5.34256 5.41720 5.43255 5.86939 5.88581 6.08659 6.13386 6.20691 6.59734 6.63201 7.15271 7.23540 7.32038 7.59459 8.16499 8.71500 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.001647 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.268581 B =17000.616375 C =17440.884209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 N -0.535 5.535 4 C 0.048 3.952 5 C 0.131 3.869 6 N -0.715 5.715 7 C 0.504 3.496 8 O -0.588 6.588 9 C -0.145 4.145 10 C 0.137 3.863 11 H 0.092 0.908 12 C -0.112 4.112 13 C -0.149 4.149 14 C 0.499 3.501 15 O -0.603 6.603 16 N -0.723 5.723 17 C 0.057 3.943 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.990 3.010 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.276 1.276 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.058 0.942 38 H 0.419 0.581 39 H 0.115 0.885 40 H 0.153 0.847 41 H 0.133 0.867 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.125 0.875 45 H 0.403 0.597 46 H 0.077 0.923 47 H 0.112 0.888 48 H 0.396 0.604 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.055 4.634 28.160 31.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.078 4.078 3 N -0.259 5.259 4 C -0.080 4.080 5 C 0.006 3.994 6 N -0.368 5.368 7 C 0.292 3.708 8 O -0.468 6.468 9 C -0.185 4.185 10 C 0.032 3.968 11 H 0.111 0.889 12 C -0.149 4.149 13 C -0.189 4.189 14 C 0.287 3.713 15 O -0.485 6.485 16 N -0.375 5.375 17 C -0.073 4.073 18 C 0.228 3.772 19 O -0.504 6.504 20 N -0.214 5.214 21 C -0.461 4.461 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.814 3.186 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.201 1.201 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.256 0.744 39 H 0.133 0.867 40 H 0.171 0.829 41 H 0.151 0.849 42 H 0.113 0.887 43 H 0.127 0.873 44 H 0.143 0.857 45 H 0.241 0.759 46 H 0.095 0.905 47 H 0.130 0.870 48 H 0.230 0.770 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.996 3.792 28.397 31.059 hybrid contribution 0.006 -0.202 -1.812 1.824 sum -11.991 3.590 26.585 29.384 Atomic orbital electron populations 1.22352 0.96245 1.03200 1.02356 1.22117 0.94033 0.89608 1.02025 1.61520 1.60805 1.02524 1.01029 1.22292 0.99053 0.98546 0.88070 1.21010 0.98316 0.95902 0.84144 1.45804 1.49161 1.36626 1.05233 1.21432 0.80159 0.83679 0.85494 1.90708 1.37097 1.32142 1.86885 1.22289 1.05133 1.01230 0.89850 1.21667 0.78487 1.01562 0.95132 0.88949 1.22744 0.99676 0.96606 0.95903 1.22417 0.91764 1.01266 1.03481 1.21946 0.90950 0.79472 0.78915 1.90725 1.26848 1.64623 1.66256 1.46655 1.10348 1.35223 1.45243 1.21763 0.97732 0.99616 0.88236 1.20903 0.87012 0.84957 0.84348 1.90498 1.36330 1.38806 1.84724 1.41922 1.33093 1.41114 1.05238 1.19619 1.15237 1.24705 0.86582 0.90647 1.25969 0.98115 0.96674 1.00400 1.69660 1.31230 1.32192 1.22981 0.84974 0.78163 0.78143 0.77331 1.19660 1.19472 1.20109 0.91353 0.90181 0.93043 0.93456 0.90401 0.91059 0.88958 0.93725 0.92328 0.74405 0.86718 0.82933 0.84907 0.88669 0.87268 0.85710 0.75935 0.90485 0.87030 0.77002 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.05 9.27 71.98 0.67 -3.38 16 2 C 0.05 1.50 5.52 86.30 0.48 1.97 16 3 N -0.53 -16.04 4.31 -900.80 -3.88 -19.92 16 4 C 0.05 0.92 4.81 86.31 0.41 1.33 16 5 C 0.13 2.69 5.60 86.38 0.48 3.18 16 6 N -0.72 -9.11 5.56 -463.06 -2.57 -11.68 16 7 C 0.50 7.60 7.71 87.66 0.68 8.28 16 8 O -0.59 -14.84 14.96 -3.02 -0.05 -14.88 16 9 C -0.14 -0.64 5.31 29.85 0.16 -0.48 16 10 C 0.14 1.05 3.02 45.44 0.14 1.18 16 11 H 0.09 0.85 7.99 -2.39 -0.02 0.83 16 12 C -0.11 -0.10 6.70 31.65 0.21 0.12 16 13 C -0.15 -0.99 6.86 30.59 0.21 -0.78 16 14 C 0.50 9.56 8.43 87.90 0.74 10.30 16 15 O -0.60 -18.56 18.03 -3.04 -0.05 -18.62 16 16 N -0.72 -12.05 5.46 -439.43 -2.40 -14.45 16 17 C 0.06 1.86 5.34 85.56 0.46 2.32 16 18 C 0.44 20.78 7.36 87.66 0.65 21.43 16 19 O -0.62 -34.63 14.70 -3.07 -0.05 -34.68 16 20 N -0.58 -29.29 5.29 -306.98 -1.62 -30.92 16 21 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 22 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.24 13.05 21.66 0.28 -48.95 16 25 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 28 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.33 6.26 -2.39 -0.01 1.31 16 31 H 0.05 1.23 6.29 -2.39 -0.02 1.21 16 32 H 0.05 1.85 6.54 -2.39 -0.02 1.83 16 33 H 0.08 2.19 6.51 -2.39 -0.02 2.17 16 34 H 0.07 1.00 5.97 -2.39 -0.01 0.99 16 35 H 0.09 1.54 7.86 -2.39 -0.02 1.52 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.35 6.57 -2.39 -0.02 1.33 16 38 H 0.42 2.08 8.47 -92.71 -0.79 1.30 16 39 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.15 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.13 -0.81 7.89 -2.39 -0.02 -0.83 16 42 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.40 8.75 8.19 -92.71 -0.76 7.99 16 46 H 0.08 2.17 5.97 -2.39 -0.01 2.15 16 47 H 0.11 3.09 7.81 -2.39 -0.02 3.08 16 48 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 49 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -87.38 396.00 -3.02 -90.39 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -1.26 Total: 31.25 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 6.56 Total: 27.20 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -10.19 Total: -125.92 kcal Atomic # 8 Polarization: -68.03 SS G_CDS: -0.15 Total: -68.18 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -87.38 -3.02 -90.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731812285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.433 kcal (2) G-P(sol) polarization free energy of solvation -87.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds