Wall clock time and date at job start Sat Apr 11 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46493 * 119.99899 * 270.00188 * 3 2 1 5 5 C 1.52997 * 109.47377 * 90.00269 * 4 3 2 6 6 N 1.46902 * 109.47359 * 179.97438 * 5 4 3 7 7 C 1.46900 * 111.00130 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47031 * 180.02562 * 7 6 5 9 9 O 1.21295 * 120.00126 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00240 * 180.02562 * 8 7 6 11 11 C 1.37095 * 120.00336 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00056 * 359.97438 * 11 10 8 13 13 C 1.38958 * 120.00146 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00079 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99837 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47250 * 89.99831 * 15 13 11 17 17 H 1.48494 * 109.47133 * 209.99712 * 15 13 11 18 18 H 1.48498 * 109.46902 * 330.00131 * 15 13 11 19 19 C 1.34773 * 119.99455 * 90.00023 * 3 2 1 20 20 O 1.21287 * 119.99667 * 179.97438 * 19 3 2 21 21 C 1.50702 * 120.00755 * 0.02562 * 19 3 2 22 22 C 1.52997 * 109.47266 * 180.02562 * 21 19 3 23 23 H 1.09005 * 110.43455 * 307.53564 * 22 21 19 24 24 C 1.54633 * 110.48556 * 184.99971 * 22 21 19 25 25 C 1.54480 * 101.76545 * 216.52216 * 24 22 21 26 26 N 1.46763 * 105.47353 * 25.41670 * 25 24 22 27 27 C 1.34430 * 111.30048 * 342.98087 * 26 25 24 28 28 O 1.21277 * 124.93909 * 180.44680 * 27 26 25 29 29 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 30 30 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 33 33 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 34 34 H 1.09006 * 109.46911 * 209.99921 * 4 3 2 35 35 H 1.08996 * 109.47170 * 329.99434 * 4 3 2 36 36 H 1.09006 * 109.46817 * 299.99710 * 5 4 3 37 37 H 1.08996 * 109.47652 * 59.99460 * 5 4 3 38 38 H 1.00900 * 110.99858 * 56.04289 * 6 5 4 39 39 H 1.08997 * 109.47341 * 300.00167 * 7 6 5 40 40 H 1.08998 * 109.46748 * 60.00150 * 7 6 5 41 41 H 0.97006 * 119.99794 * 0.02562 * 10 8 7 42 42 H 0.96998 * 119.99636 * 179.97438 * 14 13 11 43 43 H 1.09004 * 109.46469 * 300.00239 * 21 19 3 44 44 H 1.09002 * 109.46873 * 59.99721 * 21 19 3 45 45 H 1.09008 * 110.96677 * 334.64369 * 24 22 21 46 46 H 1.08999 * 110.97149 * 98.40064 * 24 22 21 47 47 H 1.08997 * 110.24220 * 144.41476 * 25 24 22 48 48 H 1.08997 * 110.24225 * 266.41597 * 25 24 22 49 49 H 0.96996 * 124.35101 * 162.99031 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 0.9875 2.7931 -1.7103 6 7 1.2325 3.4861 -2.9822 7 6 0.0271 4.1910 -3.4384 8 6 0.3161 4.8878 -4.7430 9 8 1.4178 4.8048 -5.2438 10 7 -0.6494 5.6030 -5.3534 11 6 -0.3867 6.2364 -6.5405 12 1 0.5942 6.1626 -6.9864 13 6 -1.3824 6.9734 -7.1700 14 7 -1.1304 7.5810 -8.3077 15 14 -3.0791 7.1005 -6.3991 16 1 -3.1251 8.2776 -5.4947 17 1 -4.0979 7.2576 -7.4680 18 1 -3.3631 5.8676 -5.6217 19 6 2.2429 2.0165 1.1672 20 8 2.6477 3.1598 1.1673 21 6 1.9923 1.3059 2.4724 22 6 2.3230 2.2435 3.6353 23 1 3.3265 2.6534 3.5201 24 6 2.1943 1.4988 4.9843 25 6 1.6209 2.6029 5.9001 26 7 0.9218 3.5312 5.0037 27 6 1.3011 3.3553 3.7261 28 8 0.8851 3.9952 2.7837 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.0644 2.7985 -1.1383 35 1 2.5506 1.3452 -2.0283 36 1 0.1856 2.0665 -1.8407 37 1 0.6994 3.5198 -0.9507 38 1 1.5635 2.8435 -3.6862 39 1 -0.7811 3.4738 -3.5812 40 1 -0.2682 4.9270 -2.6906 41 1 -1.5303 5.6696 -4.9527 42 1 -1.8255 8.0951 -8.7472 43 1 0.9444 1.0114 2.5302 44 1 2.6229 0.4186 2.5299 45 1 1.5018 0.6609 4.9028 46 1 3.1688 1.1643 5.3398 47 1 0.9219 2.1727 6.6173 48 1 2.4281 3.1176 6.4212 49 1 0.2699 4.1874 5.2956 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732779840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:02 Heat of formation + Delta-G solvation = -95.476152 kcal Electronic energy + Delta-G solvation = -29717.973470 eV Core-core repulsion = 25487.330711 eV Total energy + Delta-G solvation = -4230.642759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.99672 -39.69246 -38.38762 -36.58696 -36.54989 -35.21400 -33.83970 -33.38194 -31.61704 -31.20181 -29.82463 -28.86433 -26.69788 -25.55459 -23.68748 -23.54732 -22.37253 -22.02367 -20.38920 -19.35174 -19.09371 -18.26208 -17.73602 -17.18819 -17.07813 -16.33766 -16.06683 -15.57579 -15.41133 -15.03017 -14.79223 -14.28081 -14.22654 -14.11740 -13.90118 -13.77521 -13.73664 -13.36239 -13.14163 -13.06660 -12.94401 -12.80564 -12.53243 -12.35007 -12.16596 -11.97811 -11.94018 -11.76357 -11.55744 -11.49413 -11.42283 -11.12299 -10.81536 -10.53853 -10.00238 -9.91622 -9.71601 -9.50685 -9.42598 -8.85662 -8.48448 -8.12224 -8.03244 -6.25127 -3.76036 2.42198 2.58854 2.79615 3.03112 3.07921 3.12957 3.19849 3.82018 3.87738 3.92144 4.15234 4.16164 4.31052 4.34539 4.53989 4.67715 4.74862 4.78209 4.87944 4.94468 4.97447 5.03481 5.07946 5.15389 5.20733 5.24978 5.30116 5.31629 5.37444 5.40926 5.54229 5.59048 5.71253 5.86932 5.89998 5.99437 6.01847 6.12079 6.42378 6.50756 6.71545 7.17669 7.25855 7.64739 7.69134 8.06103 8.17092 8.21200 8.66670 9.01410 9.49175 9.90168 10.88107 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.002074 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.204891 B =13500.281994 C =14312.057574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.105 3.895 3 N -0.616 5.616 4 C 0.120 3.880 5 C 0.046 3.954 6 N -0.665 5.665 7 C 0.051 3.949 8 C 0.452 3.548 9 O -0.564 6.564 10 N -0.592 5.592 11 C -0.303 4.303 12 H 0.120 0.880 13 C 0.040 3.960 14 N -0.883 5.883 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.510 3.490 20 O -0.505 6.505 21 C -0.122 4.122 22 C -0.111 4.111 23 H 0.117 0.883 24 C -0.131 4.131 25 C 0.102 3.898 26 N -0.742 5.742 27 C 0.517 3.483 28 O -0.498 6.498 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.026 0.974 37 H 0.076 0.924 38 H 0.348 0.652 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.588 -21.401 32.259 38.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.018 4.018 3 N -0.351 5.351 4 C -0.002 4.002 5 C -0.084 4.084 6 N -0.298 5.298 7 C -0.082 4.082 8 C 0.238 3.762 9 O -0.446 6.446 10 N -0.232 5.232 11 C -0.432 4.432 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.523 5.523 15 Si 0.706 3.294 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.196 1.196 19 C 0.297 3.703 20 O -0.378 6.378 21 C -0.163 4.163 22 C -0.133 4.133 23 H 0.135 0.865 24 C -0.169 4.169 25 C -0.023 4.023 26 N -0.400 5.400 27 C 0.301 3.699 28 O -0.370 6.370 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.095 0.905 38 H 0.167 0.833 39 H 0.061 0.939 40 H 0.106 0.894 41 H 0.203 0.797 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.120 0.880 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.097 0.903 48 H 0.089 0.911 49 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.639 -19.864 31.462 37.386 hybrid contribution -2.480 -0.324 0.394 2.532 sum 1.159 -20.188 31.856 37.732 Atomic orbital electron populations 1.22325 0.95963 1.02220 1.02994 1.21583 0.94537 0.82524 1.03177 1.47928 1.67067 1.14009 1.06124 1.21362 0.98403 0.96677 0.83801 1.22370 0.96300 0.96802 0.92953 1.59916 1.31503 1.33310 1.05056 1.21680 0.91449 0.98123 0.96957 1.19714 0.85780 0.84006 0.86736 1.90559 1.22890 1.64429 1.66672 1.42206 1.11724 1.46836 1.22393 1.19440 1.01358 1.26062 0.96332 0.86269 1.25037 0.98325 0.96867 0.96016 1.69624 1.34206 1.32461 1.15994 0.86667 0.84369 0.78781 0.79552 1.19583 1.20228 1.19553 1.20422 0.78031 0.86827 0.85055 1.90795 1.43463 1.16737 1.86820 1.21588 1.03999 0.98930 0.91755 1.21759 1.01456 0.95386 0.94690 0.86490 1.22721 1.02922 0.97639 0.93587 1.22010 0.96854 0.90527 0.92875 1.46255 1.45452 1.39918 1.08360 1.20724 0.82121 0.84444 0.82570 1.90856 1.57095 1.49349 1.39733 0.91777 0.91516 0.92497 0.90121 0.90439 0.88713 0.90723 0.95595 0.90530 0.83279 0.93911 0.89425 0.79695 0.91680 0.88797 0.88013 0.89728 0.88885 0.90317 0.91096 0.75265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 10.24 37.16 0.38 -0.76 16 2 C 0.11 0.65 5.98 -4.04 -0.02 0.63 16 3 N -0.62 -6.26 2.47 -173.69 -0.43 -6.69 16 4 C 0.12 1.49 5.71 -4.05 -0.02 1.46 16 5 C 0.05 0.66 6.01 -3.82 -0.02 0.64 16 6 N -0.67 -11.61 6.13 -115.06 -0.71 -12.32 16 7 C 0.05 0.95 6.17 -4.98 -0.03 0.91 16 8 C 0.45 10.98 7.82 -10.99 -0.09 10.89 16 9 O -0.56 -15.94 15.78 5.54 0.09 -15.85 16 10 N -0.59 -14.93 5.09 -10.96 -0.06 -14.98 16 11 C -0.30 -8.93 10.16 -14.93 -0.15 -9.08 16 12 H 0.12 3.99 7.39 -52.48 -0.39 3.60 16 13 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 14 N -0.88 -26.54 13.96 55.50 0.77 -25.76 16 15 Si 0.88 20.20 27.74 -169.99 -4.71 15.49 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 18 H -0.27 -5.68 6.52 56.52 0.37 -5.31 16 19 C 0.51 5.99 7.14 -10.99 -0.08 5.92 16 20 O -0.51 -8.44 13.63 -15.85 -0.22 -8.65 16 21 C -0.12 -0.85 3.64 -27.88 -0.10 -0.95 16 22 C -0.11 -0.81 2.54 -90.63 -0.23 -1.04 16 23 H 0.12 0.96 7.90 -51.93 -0.41 0.55 16 24 C -0.13 -0.38 6.70 -25.10 -0.17 -0.55 16 25 C 0.10 0.34 7.78 -3.12 -0.02 0.31 16 26 N -0.74 -5.20 6.24 -59.20 -0.37 -5.57 16 27 C 0.52 5.66 7.70 -10.86 -0.08 5.58 16 28 O -0.50 -8.27 15.63 -15.84 -0.25 -8.52 16 29 H 0.06 0.53 6.26 -51.93 -0.33 0.20 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.40 7.22 -51.93 -0.38 0.03 16 32 H 0.08 0.43 7.89 -51.93 -0.41 0.02 16 33 H 0.08 0.29 6.44 -51.93 -0.33 -0.04 16 34 H 0.09 1.42 7.42 -51.93 -0.39 1.04 16 35 H 0.07 0.76 7.89 -51.93 -0.41 0.35 16 36 H 0.03 0.33 6.26 -51.93 -0.33 0.01 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.35 5.92 8.43 -39.29 -0.33 5.59 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.37 8.26 5.76 -40.82 -0.24 8.03 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.09 0.58 7.17 -51.93 -0.37 0.21 16 44 H 0.10 0.37 7.40 -51.93 -0.38 -0.01 16 45 H 0.08 0.15 7.91 -51.92 -0.41 -0.26 16 46 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 47 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 48 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 49 H 0.41 2.49 8.96 -40.82 -0.37 2.12 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -40.67 396.09 -8.24 -48.90 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -7.59 Total: 12.99 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: -0.74 Total: 15.00 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.79 Total: -65.33 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.38 Total: -33.02 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.71 Total: 15.49 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -40.67 -8.24 -48.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732779840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.574 kcal (2) G-P(sol) polarization free energy of solvation -40.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds