Wall clock time and date at job start Sat Apr 11 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46493 * 119.99899 * 270.00188 * 3 2 1 5 5 C 1.52997 * 109.47377 * 90.00269 * 4 3 2 6 6 N 1.46902 * 109.47359 * 179.97438 * 5 4 3 7 7 C 1.46900 * 111.00130 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47031 * 180.02562 * 7 6 5 9 9 O 1.21295 * 120.00126 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00240 * 180.02562 * 8 7 6 11 11 C 1.37095 * 120.00336 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00056 * 359.97438 * 11 10 8 13 13 C 1.38958 * 120.00146 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00079 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99837 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47250 * 89.99831 * 15 13 11 17 17 H 1.48494 * 109.47133 * 209.99712 * 15 13 11 18 18 H 1.48498 * 109.46902 * 330.00131 * 15 13 11 19 19 C 1.34773 * 119.99455 * 90.00023 * 3 2 1 20 20 O 1.21287 * 119.99667 * 179.97438 * 19 3 2 21 21 C 1.50702 * 120.00755 * 0.02562 * 19 3 2 22 22 C 1.52997 * 109.47266 * 180.02562 * 21 19 3 23 23 H 1.09005 * 110.43455 * 307.53564 * 22 21 19 24 24 C 1.54633 * 110.48556 * 184.99971 * 22 21 19 25 25 C 1.54480 * 101.76545 * 216.52216 * 24 22 21 26 26 N 1.46763 * 105.47353 * 25.41670 * 25 24 22 27 27 C 1.34430 * 111.30048 * 342.98087 * 26 25 24 28 28 O 1.21277 * 124.93909 * 180.44680 * 27 26 25 29 29 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 30 30 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 33 33 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 34 34 H 1.09006 * 109.46911 * 209.99921 * 4 3 2 35 35 H 1.08996 * 109.47170 * 329.99434 * 4 3 2 36 36 H 1.09006 * 109.46817 * 299.99710 * 5 4 3 37 37 H 1.08996 * 109.47652 * 59.99460 * 5 4 3 38 38 H 1.00900 * 110.99858 * 56.04289 * 6 5 4 39 39 H 1.08997 * 109.47341 * 300.00167 * 7 6 5 40 40 H 1.08998 * 109.46748 * 60.00150 * 7 6 5 41 41 H 0.97006 * 119.99794 * 0.02562 * 10 8 7 42 42 H 0.96998 * 119.99636 * 179.97438 * 14 13 11 43 43 H 1.09004 * 109.46469 * 300.00239 * 21 19 3 44 44 H 1.09002 * 109.46873 * 59.99721 * 21 19 3 45 45 H 1.09008 * 110.96677 * 334.64369 * 24 22 21 46 46 H 1.08999 * 110.97149 * 98.40064 * 24 22 21 47 47 H 1.08997 * 110.24220 * 144.41476 * 25 24 22 48 48 H 1.08997 * 110.24225 * 266.41597 * 25 24 22 49 49 H 0.96996 * 124.35101 * 162.99031 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 0.9875 2.7931 -1.7103 6 7 1.2325 3.4861 -2.9822 7 6 0.0271 4.1910 -3.4384 8 6 0.3161 4.8878 -4.7430 9 8 1.4178 4.8048 -5.2438 10 7 -0.6494 5.6030 -5.3534 11 6 -0.3867 6.2364 -6.5405 12 1 0.5942 6.1626 -6.9864 13 6 -1.3824 6.9734 -7.1700 14 7 -1.1304 7.5810 -8.3077 15 14 -3.0791 7.1005 -6.3991 16 1 -3.1251 8.2776 -5.4947 17 1 -4.0979 7.2576 -7.4680 18 1 -3.3631 5.8676 -5.6217 19 6 2.2429 2.0165 1.1672 20 8 2.6477 3.1598 1.1673 21 6 1.9923 1.3059 2.4724 22 6 2.3230 2.2435 3.6353 23 1 3.3265 2.6534 3.5201 24 6 2.1943 1.4988 4.9843 25 6 1.6209 2.6029 5.9001 26 7 0.9218 3.5312 5.0037 27 6 1.3011 3.3553 3.7261 28 8 0.8851 3.9952 2.7837 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.0644 2.7985 -1.1383 35 1 2.5506 1.3452 -2.0283 36 1 0.1856 2.0665 -1.8407 37 1 0.6994 3.5198 -0.9507 38 1 1.5635 2.8435 -3.6862 39 1 -0.7811 3.4738 -3.5812 40 1 -0.2682 4.9270 -2.6906 41 1 -1.5303 5.6696 -4.9527 42 1 -1.8255 8.0951 -8.7472 43 1 0.9444 1.0114 2.5302 44 1 2.6229 0.4186 2.5299 45 1 1.5018 0.6609 4.9028 46 1 3.1688 1.1643 5.3398 47 1 0.9219 2.1727 6.6173 48 1 2.4281 3.1176 6.4212 49 1 0.2699 4.1874 5.2956 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732779840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:01 Heat of formation + Delta-G solvation = -130.392527 kcal Electronic energy + Delta-G solvation = -29719.487557 eV Core-core repulsion = 25487.330711 eV Total energy + Delta-G solvation = -4232.156846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67564 -40.53744 -40.28552 -37.63338 -37.32099 -36.47226 -35.86475 -34.01424 -33.78545 -32.02206 -30.58399 -29.67306 -27.96681 -26.66984 -25.29307 -24.17496 -23.17886 -22.72063 -21.39684 -21.03987 -20.33879 -19.81294 -18.40831 -18.01107 -17.82393 -17.64330 -17.30814 -16.92939 -16.69726 -16.22343 -15.82277 -15.55908 -15.31380 -15.14180 -14.89648 -14.75022 -14.61335 -14.57740 -14.37203 -14.20713 -13.91750 -13.73469 -13.49787 -13.42112 -13.30002 -13.09759 -12.92400 -12.69621 -12.53189 -12.44817 -12.32768 -12.22449 -12.00404 -11.84005 -11.70465 -11.56140 -10.85767 -10.54946 -10.52247 -10.29141 -9.99150 -9.67294 -9.41115 -8.44788 -6.05777 1.26857 1.32628 1.41043 1.66075 1.76899 1.88389 2.02339 2.19624 2.51749 2.72155 3.10658 3.37519 3.44931 3.49218 3.72981 3.89159 3.98051 4.06411 4.10114 4.16652 4.30498 4.32966 4.34837 4.41980 4.44504 4.46862 4.50297 4.58236 4.68636 4.82820 4.84529 4.86593 4.88770 5.01145 5.03443 5.13680 5.27239 5.41396 5.47687 5.61277 5.83766 5.95437 5.99578 6.09488 6.34329 6.50946 6.55286 6.82921 7.33106 7.34124 7.39902 7.89623 8.72736 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.002074 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.204891 B =13500.281994 C =14312.057574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 N -0.614 5.614 4 C 0.124 3.876 5 C 0.060 3.940 6 N -0.686 5.686 7 C 0.065 3.935 8 C 0.450 3.550 9 O -0.611 6.611 10 N -0.590 5.590 11 C -0.330 4.330 12 H 0.057 0.943 13 C -0.014 4.014 14 N -0.931 5.931 15 Si 0.964 3.036 16 H -0.260 1.260 17 H -0.270 1.270 18 H -0.233 1.233 19 C 0.497 3.503 20 O -0.567 6.567 21 C -0.114 4.114 22 C -0.112 4.112 23 H 0.101 0.899 24 C -0.115 4.115 25 C 0.094 3.906 26 N -0.736 5.736 27 C 0.500 3.500 28 O -0.571 6.571 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.350 0.650 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.389 0.611 42 H 0.280 0.720 43 H 0.107 0.893 44 H 0.146 0.854 45 H 0.106 0.894 46 H 0.120 0.880 47 H 0.107 0.893 48 H 0.081 0.919 49 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.384 -25.120 35.966 43.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.022 4.022 3 N -0.348 5.348 4 C 0.000 4.000 5 C -0.070 4.070 6 N -0.320 5.320 7 C -0.068 4.068 8 C 0.237 3.763 9 O -0.496 6.496 10 N -0.231 5.231 11 C -0.459 4.459 12 H 0.075 0.925 13 C -0.213 4.213 14 N -0.572 5.572 15 Si 0.784 3.216 16 H -0.185 1.185 17 H -0.194 1.194 18 H -0.156 1.156 19 C 0.286 3.714 20 O -0.445 6.445 21 C -0.154 4.154 22 C -0.134 4.134 23 H 0.119 0.881 24 C -0.153 4.153 25 C -0.029 4.029 26 N -0.391 5.391 27 C 0.286 3.714 28 O -0.449 6.449 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.170 0.830 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.225 0.775 42 H 0.090 0.910 43 H 0.125 0.875 44 H 0.163 0.837 45 H 0.125 0.875 46 H 0.138 0.862 47 H 0.125 0.875 48 H 0.099 0.901 49 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.430 -23.664 35.250 42.481 hybrid contribution -1.674 0.837 -0.751 2.017 sum -0.244 -22.827 34.500 41.369 Atomic orbital electron populations 1.22298 0.96006 1.03358 1.01544 1.21934 0.94420 0.80245 1.05640 1.48074 1.66462 1.15380 1.04835 1.21171 0.96291 0.96720 0.85773 1.22258 0.98082 0.96270 0.90387 1.59858 1.31564 1.34374 1.06180 1.21569 0.92953 0.98830 0.93434 1.20826 0.84706 0.82804 0.87926 1.90535 1.24939 1.65745 1.68347 1.42025 1.12935 1.46845 1.21312 1.19026 0.99679 1.28664 0.98566 0.92502 1.26112 1.03753 0.95243 0.96187 1.69796 1.36479 1.33030 1.17851 0.85373 0.76605 0.80565 0.79048 1.18476 1.19448 1.15632 1.21416 0.76702 0.86386 0.86870 1.90770 1.46306 1.19629 1.87779 1.21689 1.05636 0.99540 0.88509 1.21805 0.99191 0.94854 0.97552 0.88094 1.22804 1.05003 0.97401 0.90074 1.22373 0.97601 0.90150 0.92772 1.46419 1.44756 1.39946 1.07962 1.21515 0.82352 0.84775 0.82763 1.90807 1.59828 1.52081 1.42190 0.93842 0.89019 0.93312 0.88700 0.86996 0.92318 0.88244 0.93084 0.93623 0.83029 0.90160 0.88272 0.77529 0.91025 0.87463 0.83658 0.87509 0.86212 0.87517 0.90101 0.75200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 10.24 71.98 0.74 -0.98 16 2 C 0.10 0.89 5.98 86.38 0.52 1.41 16 3 N -0.61 -11.84 2.47 -821.82 -2.03 -13.87 16 4 C 0.12 3.10 5.71 86.38 0.49 3.59 16 5 C 0.06 1.71 6.01 86.30 0.52 2.23 16 6 N -0.69 -24.10 6.13 -517.95 -3.17 -27.28 16 7 C 0.06 2.35 6.17 85.56 0.53 2.87 16 8 C 0.45 22.22 7.82 87.66 0.69 22.90 16 9 O -0.61 -36.21 15.78 -3.08 -0.05 -36.25 16 10 N -0.59 -29.92 5.09 -306.98 -1.56 -31.48 16 11 C -0.33 -20.28 10.16 84.04 0.85 -19.43 16 12 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 13 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 14 N -0.93 -57.76 13.96 21.67 0.30 -57.46 16 15 Si 0.96 40.81 27.74 68.60 1.90 42.72 16 16 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 18 H -0.23 -8.42 6.52 99.48 0.65 -7.77 16 19 C 0.50 11.65 7.14 87.66 0.63 12.28 16 20 O -0.57 -20.31 13.63 17.41 0.24 -20.07 16 21 C -0.11 -1.31 3.64 29.85 0.11 -1.20 16 22 C -0.11 -1.48 2.54 -10.80 -0.03 -1.50 16 23 H 0.10 1.66 7.90 -2.38 -0.02 1.64 16 24 C -0.12 -0.20 6.70 31.65 0.21 0.01 16 25 C 0.09 0.32 7.78 86.83 0.68 1.00 16 26 N -0.74 -9.68 6.24 -459.81 -2.87 -12.55 16 27 C 0.50 11.15 7.70 87.89 0.68 11.82 16 28 O -0.57 -20.36 15.63 17.44 0.27 -20.09 16 29 H 0.04 0.61 6.26 -2.39 -0.01 0.60 16 30 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.57 7.22 -2.39 -0.02 0.55 16 32 H 0.09 0.64 7.89 -2.39 -0.02 0.62 16 33 H 0.11 0.27 6.44 -2.39 -0.02 0.26 16 34 H 0.06 1.89 7.42 -2.38 -0.02 1.87 16 35 H 0.10 1.93 7.89 -2.39 -0.02 1.91 16 36 H 0.05 1.21 6.26 -2.38 -0.01 1.20 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.35 11.98 8.43 -89.69 -0.76 11.22 16 39 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.10 3.41 8.14 -2.39 -0.02 3.40 16 41 H 0.39 16.59 5.76 -92.70 -0.53 16.06 16 42 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 43 H 0.11 0.99 7.17 -2.38 -0.02 0.97 16 44 H 0.15 0.36 7.40 -2.39 -0.02 0.34 16 45 H 0.11 -0.22 7.91 -2.38 -0.02 -0.24 16 46 H 0.12 -0.35 8.14 -2.39 -0.02 -0.37 16 47 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 48 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 49 H 0.41 4.91 8.96 -92.71 -0.83 4.08 16 Total: -1.00 -101.08 396.09 -1.08 -102.16 By element: Atomic # 1 Polarization: 40.70 SS G_CDS: -1.18 Total: 39.52 kcal Atomic # 6 Polarization: 27.59 SS G_CDS: 7.07 Total: 34.66 kcal Atomic # 7 Polarization: -133.30 SS G_CDS: -9.33 Total: -142.64 kcal Atomic # 8 Polarization: -76.87 SS G_CDS: 0.46 Total: -76.41 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.90 Total: 42.72 kcal Total: -101.08 -1.08 -102.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732779840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.237 kcal (2) G-P(sol) polarization free energy of solvation -101.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds