Wall clock time and date at job start Sat Apr 11 2020 06:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47299 * 2 1 4 4 C 1.46502 * 120.00010 * 84.45462 * 3 2 1 5 5 C 1.52996 * 109.46861 * 90.00344 * 4 3 2 6 6 N 1.46902 * 109.47331 * 179.97438 * 5 4 3 7 7 C 1.46897 * 111.00484 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47218 * 180.02562 * 7 6 5 9 9 O 1.21291 * 120.00304 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99843 * 179.97438 * 8 7 6 11 11 C 1.37097 * 120.00009 * 179.97438 * 10 8 7 12 12 H 1.08006 * 119.99642 * 0.02562 * 11 10 8 13 13 C 1.38945 * 120.00133 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99980 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99990 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47333 * 59.99866 * 15 13 11 17 17 H 1.48504 * 109.47071 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46879 * 299.99635 * 15 13 11 19 19 C 1.34779 * 120.00002 * 264.46032 * 3 2 1 20 20 O 1.21281 * 120.00178 * 185.30603 * 19 3 2 21 21 C 1.50703 * 120.00071 * 5.30611 * 19 3 2 22 22 H 1.09007 * 109.29627 * 331.19794 * 21 19 3 23 23 C 1.52924 * 109.30126 * 90.77565 * 21 19 3 24 24 C 1.53263 * 108.71274 * 171.26377 * 23 21 19 25 25 C 1.53073 * 108.24466 * 292.18537 * 24 23 21 26 26 C 1.50174 * 109.89090 * 48.97006 * 25 24 23 27 27 O 1.21284 * 118.24437 * 162.39622 * 26 25 24 28 28 N 1.33353 * 123.50926 * 342.41559 * 26 25 24 29 29 H 1.09000 * 109.47258 * 300.17346 * 1 2 3 30 30 H 1.08997 * 109.47120 * 60.17692 * 1 2 3 31 31 H 1.08999 * 109.47205 * 180.18175 * 1 2 3 32 32 H 1.08999 * 109.46835 * 239.99941 * 2 1 3 33 33 H 1.08998 * 109.47277 * 120.00331 * 2 1 3 34 34 H 1.08996 * 109.47077 * 329.99988 * 4 3 2 35 35 H 1.09002 * 109.46988 * 210.00177 * 4 3 2 36 36 H 1.08994 * 109.47633 * 300.00164 * 5 4 3 37 37 H 1.09003 * 109.46961 * 60.00196 * 5 4 3 38 38 H 1.00897 * 110.99927 * 303.96246 * 6 5 4 39 39 H 1.09005 * 109.46674 * 300.00568 * 7 6 5 40 40 H 1.09001 * 109.46838 * 60.00275 * 7 6 5 41 41 H 0.96993 * 120.00118 * 0.02562 * 10 8 7 42 42 H 0.96995 * 120.00016 * 180.02562 * 14 13 11 43 43 H 1.08997 * 109.60094 * 290.82554 * 23 21 19 44 44 H 1.08998 * 109.60233 * 51.30979 * 23 21 19 45 45 H 1.08999 * 109.70715 * 172.54209 * 24 23 21 46 46 H 1.09001 * 109.85192 * 51.91367 * 24 23 21 47 47 H 1.08998 * 109.40280 * 288.83814 * 25 24 23 48 48 H 1.09003 * 109.40255 * 169.09499 * 25 24 23 49 49 H 0.96995 * 117.94372 * 182.20765 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1470 2.1127 1.2628 5 6 3.5454 1.8887 1.8417 6 7 3.6746 2.6227 3.1077 7 6 5.0076 2.4301 3.6942 8 6 5.1021 3.1956 4.9888 9 8 4.1527 3.8388 5.3838 10 7 6.2418 3.1655 5.7078 11 6 6.3280 3.8623 6.8853 12 1 5.4825 4.4350 7.2370 13 6 7.5030 3.8318 7.6262 14 7 8.5315 3.1345 7.1986 15 14 7.6202 4.7807 9.2310 16 1 6.5873 4.2850 10.1758 17 1 8.9675 4.5855 9.8243 18 1 7.3988 6.2255 8.9690 19 6 2.3493 1.9790 -1.1618 20 8 2.8436 3.0864 -1.1547 21 6 2.1050 1.2713 -2.4697 22 1 2.1586 0.1940 -2.3119 23 6 0.7144 1.6371 -2.9903 24 6 0.5636 1.0921 -4.4148 25 6 1.5133 1.8705 -5.3288 26 6 2.8842 1.9202 -4.7177 27 8 3.8216 2.2036 -5.4332 28 7 3.1261 1.6688 -3.4306 29 1 -0.3634 0.5165 0.8884 30 1 -0.3633 0.5111 -0.8915 31 1 -0.3633 -1.0276 0.0033 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.3992 1.7523 1.9692 35 1 1.9941 3.1769 1.0834 36 1 3.6983 0.8246 2.0210 37 1 4.2931 2.2492 1.1352 38 1 3.4739 3.6031 2.9793 39 1 5.1699 1.3695 3.8868 40 1 5.7657 2.7936 3.0005 41 1 7.0011 2.6514 5.3917 42 1 9.3516 3.1129 7.7160 43 1 -0.0454 1.1905 -2.3490 44 1 0.5998 2.7210 -2.9967 45 1 -0.4638 1.2268 -4.7531 46 1 0.8207 0.0331 -4.4351 47 1 1.1385 2.8856 -5.4602 48 1 1.5672 1.3773 -6.2993 49 1 4.0388 1.7559 -3.1142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732780713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:04 Heat of formation + Delta-G solvation = -135.501760 kcal Electronic energy + Delta-G solvation = -29460.326939 eV Core-core repulsion = 25227.948540 eV Total energy + Delta-G solvation = -4232.378399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.00840 -40.59239 -40.16630 -37.83926 -37.32973 -36.53908 -35.81587 -34.02952 -33.31419 -32.31107 -31.10858 -30.04044 -27.86440 -26.39294 -25.34201 -24.38237 -23.79928 -23.23798 -21.21503 -20.44188 -20.11106 -19.90849 -18.52577 -18.51448 -17.90146 -17.62859 -17.07868 -16.72595 -16.53246 -16.37547 -16.07550 -15.85767 -15.44004 -15.30819 -15.10972 -15.02307 -14.79234 -14.61306 -14.34844 -14.28250 -13.91763 -13.60001 -13.50274 -13.36078 -13.13632 -12.96024 -12.77382 -12.68691 -12.62060 -12.45227 -12.24705 -12.13347 -12.07843 -11.90864 -11.56068 -11.52432 -11.33942 -10.79998 -10.42362 -10.14373 -10.04651 -9.82817 -9.46601 -8.48552 -5.97869 1.30904 1.38787 1.40725 1.45353 1.52025 1.78647 2.01329 2.25839 2.30089 2.92645 3.18119 3.23906 3.51391 3.54161 3.62813 3.72952 3.91873 3.97390 4.06291 4.13556 4.20762 4.27252 4.39375 4.44967 4.46989 4.51039 4.54742 4.58173 4.72947 4.77112 4.81520 4.88032 4.89397 5.04135 5.06169 5.09702 5.26091 5.38577 5.45073 5.55374 5.57061 5.80423 6.03005 6.17600 6.24231 6.30859 6.56867 6.97284 7.08996 7.09559 7.52457 8.07392 8.68579 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021689 B = 0.001780 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.690121 B =15729.265913 C =16514.731633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.088 3.912 3 N -0.596 5.596 4 C 0.124 3.876 5 C 0.054 3.946 6 N -0.675 5.675 7 C 0.066 3.934 8 C 0.437 3.563 9 O -0.622 6.622 10 N -0.572 5.572 11 C -0.336 4.336 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.995 3.005 16 H -0.270 1.270 17 H -0.270 1.270 18 H -0.273 1.273 19 C 0.496 3.504 20 O -0.577 6.577 21 C 0.127 3.873 22 H 0.137 0.863 23 C -0.131 4.131 24 C -0.110 4.110 25 C -0.135 4.135 26 C 0.516 3.484 27 O -0.611 6.611 28 N -0.703 5.703 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.017 0.983 38 H 0.342 0.658 39 H 0.110 0.890 40 H 0.058 0.942 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.122 0.878 44 H 0.062 0.938 45 H 0.111 0.889 46 H 0.094 0.906 47 H 0.106 0.894 48 H 0.114 0.886 49 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.564 -14.232 -23.479 33.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.033 4.033 3 N -0.328 5.328 4 C 0.001 3.999 5 C -0.076 4.076 6 N -0.307 5.307 7 C -0.066 4.066 8 C 0.224 3.776 9 O -0.509 6.509 10 N -0.209 5.209 11 C -0.466 4.466 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.561 5.561 15 Si 0.818 3.182 16 H -0.195 1.195 17 H -0.194 1.194 18 H -0.198 1.198 19 C 0.284 3.716 20 O -0.456 6.456 21 C 0.019 3.981 22 H 0.154 0.846 23 C -0.168 4.168 24 C -0.147 4.147 25 C -0.174 4.174 26 C 0.306 3.694 27 O -0.493 6.493 28 N -0.353 5.353 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.035 0.965 38 H 0.160 0.840 39 H 0.128 0.872 40 H 0.076 0.924 41 H 0.230 0.770 42 H 0.088 0.912 43 H 0.140 0.860 44 H 0.081 0.919 45 H 0.129 0.871 46 H 0.112 0.888 47 H 0.124 0.876 48 H 0.132 0.868 49 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -19.806 -13.663 -23.191 33.418 hybrid contribution 2.033 1.285 0.568 2.471 sum -17.773 -12.379 -22.623 31.320 Atomic orbital electron populations 1.22336 0.94156 1.04005 1.02739 1.22124 0.95938 0.79793 1.05456 1.48052 1.64032 1.15671 1.05033 1.21240 0.96650 0.97220 0.84825 1.22276 0.97152 0.99708 0.88487 1.60048 1.27321 1.16969 1.26332 1.21520 0.91149 1.01299 0.92646 1.20803 0.83110 0.85633 0.88008 1.90486 1.38906 1.48104 1.73367 1.41926 1.13488 1.44848 1.20647 1.19655 1.00173 1.27568 0.99179 0.90201 1.26082 0.94264 0.98198 1.02810 1.69667 1.04157 1.41299 1.40948 0.84960 0.77781 0.78297 0.77120 1.19519 1.19434 1.19776 1.21395 0.77500 0.86040 0.86702 1.90769 1.44687 1.22322 1.87791 1.21345 0.90927 1.00886 0.84925 0.84629 1.22063 0.92933 1.02598 0.99245 1.21677 1.01046 1.00505 0.91493 1.21771 0.89577 1.04770 1.01324 1.21017 0.92914 0.74188 0.81306 1.90754 1.47042 1.51105 1.60381 1.45435 1.12022 1.69078 1.08787 0.93106 0.91253 0.89057 0.87373 0.88976 0.87724 0.92074 0.89217 0.96498 0.83966 0.87248 0.92414 0.76979 0.91239 0.86038 0.91884 0.87086 0.88775 0.87628 0.86759 0.77171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.50 10.23 71.98 0.74 0.24 16 2 C 0.09 0.45 5.99 86.38 0.52 0.97 16 3 N -0.60 -8.26 2.47 -821.82 -2.03 -10.29 16 4 C 0.12 2.45 5.65 86.38 0.49 2.93 16 5 C 0.05 1.28 6.01 86.30 0.52 1.80 16 6 N -0.67 -21.68 6.12 -517.95 -3.17 -24.85 16 7 C 0.07 2.35 6.17 85.56 0.53 2.88 16 8 C 0.44 21.27 7.82 87.65 0.69 21.96 16 9 O -0.62 -35.04 15.78 -3.06 -0.05 -35.09 16 10 N -0.57 -29.94 5.29 -306.98 -1.62 -31.56 16 11 C -0.34 -19.38 9.68 84.04 0.81 -18.57 16 12 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 13 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 14 N -0.92 -50.20 13.05 21.66 0.28 -49.92 16 15 Si 1.00 43.33 29.55 68.60 2.03 45.36 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 C 0.50 8.91 6.70 87.66 0.59 9.50 16 20 O -0.58 -16.89 16.31 -3.03 -0.05 -16.94 16 21 C 0.13 1.31 2.98 44.36 0.13 1.45 16 22 H 0.14 0.43 5.67 -2.38 -0.01 0.42 16 23 C -0.13 -0.75 5.27 30.66 0.16 -0.59 16 24 C -0.11 -0.25 6.04 30.71 0.19 -0.07 16 25 C -0.13 -1.28 6.02 29.71 0.18 -1.10 16 26 C 0.52 10.14 7.71 87.71 0.68 10.82 16 27 O -0.61 -18.45 17.78 -3.04 -0.05 -18.50 16 28 N -0.70 -12.08 4.82 -450.23 -2.17 -14.25 16 29 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.09 5.27 -2.39 -0.01 0.07 16 31 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.11 0.02 5.63 -2.39 -0.01 0.00 16 33 H 0.09 0.46 8.11 -2.39 -0.02 0.44 16 34 H 0.10 1.79 8.07 -2.39 -0.02 1.77 16 35 H 0.06 1.51 7.50 -2.39 -0.02 1.49 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.34 12.04 8.43 -89.70 -0.76 11.28 16 39 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.40 19.70 7.90 -92.71 -0.73 18.96 16 42 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 43 H 0.12 0.08 5.27 -2.39 -0.01 0.07 16 44 H 0.06 0.67 8.10 -2.39 -0.02 0.65 16 45 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 46 H 0.09 -0.05 8.13 -2.39 -0.02 -0.07 16 47 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.39 8.11 8.63 -92.71 -0.80 7.31 16 Total: -1.00 -84.90 399.74 -1.44 -86.35 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: -1.28 Total: 37.74 kcal Atomic # 6 Polarization: 25.27 SS G_CDS: 6.68 Total: 31.95 kcal Atomic # 7 Polarization: -122.15 SS G_CDS: -8.72 Total: -130.87 kcal Atomic # 8 Polarization: -70.38 SS G_CDS: -0.15 Total: -70.53 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -84.90 -1.44 -86.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732780713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.155 kcal (2) G-P(sol) polarization free energy of solvation -84.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds