Wall clock time and date at job start Sat Apr 11 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46505 * 119.99506 * 2 1 4 4 C 1.53001 * 109.46765 * 269.99718 * 3 2 1 5 5 C 1.53005 * 109.46907 * 180.02562 * 4 3 2 6 6 N 1.46895 * 109.47222 * 180.02562 * 5 4 3 7 7 C 1.46900 * 111.00188 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47215 * 180.02562 * 7 6 5 9 9 O 1.21292 * 120.00386 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00115 * 180.02562 * 8 7 6 11 11 C 1.37095 * 120.00378 * 179.97438 * 10 8 7 12 12 H 1.08002 * 120.00002 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00685 * 180.02562 * 11 10 8 14 14 N 1.31407 * 120.00700 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 119.99366 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46855 * 90.00203 * 15 13 11 17 17 H 1.48503 * 109.47029 * 209.99935 * 15 13 11 18 18 H 1.48494 * 109.47454 * 330.00105 * 15 13 11 19 19 C 1.34772 * 120.00140 * 179.97438 * 2 1 3 20 20 O 1.21287 * 119.99938 * 179.97438 * 19 2 1 21 21 C 1.50694 * 119.99975 * 0.02562 * 19 2 1 22 22 C 1.53000 * 109.47276 * 179.97438 * 21 19 2 23 23 H 1.09000 * 110.21727 * 304.52186 * 22 21 19 24 24 C 1.54474 * 110.24927 * 182.50055 * 22 21 19 25 25 C 1.54625 * 101.76763 * 215.58217 * 24 22 21 26 26 C 1.51286 * 104.19405 * 24.79834 * 25 24 22 27 27 O 1.21278 * 124.94126 * 163.77989 * 26 25 24 28 28 N 1.34417 * 110.11297 * 343.74897 * 26 25 24 29 29 H 1.09003 * 109.46652 * 270.00037 * 1 2 3 30 30 H 1.08997 * 109.47261 * 29.99748 * 1 2 3 31 31 H 1.08997 * 109.47339 * 150.00194 * 1 2 3 32 32 H 1.08988 * 109.47468 * 30.00132 * 3 2 1 33 33 H 1.09001 * 109.46416 * 150.00667 * 3 2 1 34 34 H 1.08994 * 109.47779 * 300.00149 * 4 3 2 35 35 H 1.09008 * 109.46942 * 60.00804 * 4 3 2 36 36 H 1.08999 * 109.47275 * 300.00879 * 5 4 3 37 37 H 1.09001 * 109.47128 * 60.00557 * 5 4 3 38 38 H 1.00905 * 111.00490 * 303.96052 * 6 5 4 39 39 H 1.08996 * 109.47292 * 299.99968 * 7 6 5 40 40 H 1.09001 * 109.47161 * 60.00286 * 7 6 5 41 41 H 0.97002 * 119.99831 * 0.02562 * 10 8 7 42 42 H 0.96997 * 120.00665 * 179.97438 * 14 13 11 43 43 H 1.09001 * 109.47795 * 60.00048 * 21 19 2 44 44 H 1.09003 * 109.47015 * 299.99877 * 21 19 2 45 45 H 1.09001 * 110.97106 * 97.46307 * 24 22 21 46 46 H 1.09007 * 110.96855 * 333.70166 * 24 22 21 47 47 H 1.09001 * 110.48978 * 266.11806 * 25 24 22 48 48 H 1.09000 * 110.49031 * 143.47236 * 25 24 22 49 49 H 0.97006 * 124.34688 * 179.62103 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2179 3.0352 -1.4426 6 7 3.4622 3.4596 -2.8275 7 6 4.1974 4.7308 -2.8668 8 6 4.4284 5.1334 -4.3005 9 8 4.0203 4.4309 -5.2011 10 7 5.0884 6.2742 -4.5821 11 6 5.2990 6.6403 -5.8863 12 1 4.9364 6.0143 -6.6882 13 6 5.9800 7.8162 -6.1767 14 7 6.1823 8.1668 -7.4269 15 14 6.6079 8.8986 -4.7897 16 1 7.9858 8.4836 -4.4230 17 1 6.6194 10.3156 -5.2341 18 1 5.7177 8.7571 -3.6096 19 6 2.1389 -1.1671 0.0005 20 8 3.3518 -1.1671 0.0001 21 6 1.3855 -2.4722 0.0005 22 6 2.3797 -3.6351 0.0005 23 1 3.0651 -3.5448 -0.8422 24 6 1.6266 -4.9824 -0.0627 25 6 2.5178 -5.8837 0.8229 26 6 3.2256 -4.9148 1.7444 27 8 3.7983 -5.2223 2.7682 28 7 3.1278 -3.6637 1.2628 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 3.0415 0.9509 -1.9564 35 1 1.4999 1.8408 -1.9564 36 1 2.6292 3.7950 -0.9285 37 1 4.1704 2.9045 -0.9289 38 1 3.9506 2.7436 -3.3444 39 1 3.6160 5.5024 -2.3622 40 1 5.1568 4.6113 -2.3635 41 1 5.4151 6.8359 -3.8619 42 1 6.6574 8.9879 -7.6296 43 1 0.7591 -2.5303 -0.8897 44 1 0.7585 -2.5298 0.8903 45 1 1.5852 -5.3586 -1.0849 46 1 0.6253 -4.8897 0.3581 47 1 3.2396 -6.4253 0.2116 48 1 1.9057 -6.5787 1.3977 49 1 3.5039 -2.8803 1.6940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733133836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:15 Heat of formation + Delta-G solvation = -105.714114 kcal Electronic energy + Delta-G solvation = -28489.577182 eV Core-core repulsion = 24258.490472 eV Total energy + Delta-G solvation = -4231.086710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.09880 -39.96839 -38.50312 -37.18163 -36.54263 -35.57653 -33.94756 -32.53442 -31.71347 -31.66648 -31.07642 -27.92249 -27.04300 -25.99949 -24.52265 -23.17880 -21.96023 -21.58310 -20.95607 -19.59002 -19.36203 -18.33045 -17.85132 -17.30419 -17.12946 -16.62436 -16.04648 -15.95413 -15.75867 -15.22031 -14.96721 -14.55900 -14.45349 -14.19669 -14.11239 -13.92133 -13.59580 -13.51918 -13.30286 -13.16697 -13.11709 -12.86908 -12.75842 -12.50567 -12.32305 -12.16367 -11.99618 -11.84826 -11.73809 -11.59391 -11.48025 -11.17697 -10.87156 -10.59885 -10.25422 -10.20058 -9.97872 -9.57645 -9.50881 -9.13964 -8.59731 -8.20337 -8.14428 -6.31373 -3.82852 2.14779 2.24419 2.49384 2.98407 3.02441 3.06570 3.14757 3.71507 3.74016 3.88260 4.02438 4.08710 4.11915 4.18133 4.53767 4.54629 4.60349 4.66657 4.74513 4.78216 4.84027 4.93954 5.03297 5.12482 5.14225 5.16531 5.18825 5.21283 5.24580 5.30142 5.43617 5.49898 5.57271 5.62727 5.80979 5.87177 5.92502 6.00077 6.15855 6.43481 6.68932 6.88604 7.09035 7.55751 7.58383 7.69011 7.90449 8.14226 8.59625 8.94688 9.42179 9.82565 10.81754 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.001501 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.295961 B =18649.057192 C =18872.535473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.615 5.615 3 C 0.116 3.884 4 C -0.131 4.131 5 C 0.062 3.938 6 N -0.669 5.669 7 C 0.048 3.952 8 C 0.450 3.550 9 O -0.565 6.565 10 N -0.591 5.591 11 C -0.306 4.306 12 H 0.119 0.881 13 C 0.042 3.958 14 N -0.881 5.881 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 C 0.510 3.490 20 O -0.535 6.535 21 C -0.152 4.152 22 C 0.145 3.855 23 H 0.092 0.908 24 C -0.129 4.129 25 C -0.157 4.157 26 C 0.516 3.484 27 O -0.540 6.540 28 N -0.718 5.718 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.351 0.649 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.105 0.895 48 H 0.102 0.898 49 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.645 -22.417 19.965 33.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.348 5.348 3 C -0.007 4.007 4 C -0.170 4.170 5 C -0.068 4.068 6 N -0.302 5.302 7 C -0.085 4.085 8 C 0.235 3.765 9 O -0.447 6.447 10 N -0.230 5.230 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.521 5.521 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.195 1.195 19 C 0.298 3.702 20 O -0.412 6.412 21 C -0.192 4.192 22 C 0.039 3.961 23 H 0.110 0.890 24 C -0.167 4.167 25 C -0.197 4.197 26 C 0.302 3.698 27 O -0.417 6.417 28 N -0.375 5.375 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.170 0.830 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.130 0.870 44 H 0.119 0.881 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.124 0.876 48 H 0.120 0.880 49 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -14.552 -22.690 19.600 33.328 hybrid contribution 1.440 1.356 1.275 2.353 sum -13.112 -21.334 20.875 32.601 Atomic orbital electron populations 1.21876 0.79159 1.03839 1.02012 1.47883 1.07215 1.06223 1.73452 1.21486 0.97759 0.84023 0.97459 1.21874 1.01755 0.97019 0.96302 1.21856 0.98446 0.96164 0.90324 1.60069 1.53003 1.05281 1.11854 1.21703 0.96887 0.93366 0.96533 1.19717 0.83491 0.83376 0.89874 1.90562 1.53261 1.53328 1.47533 1.42205 1.51642 1.21024 1.08141 1.19437 1.34232 1.07019 0.82751 0.86291 1.25035 0.97482 0.97128 0.96488 1.69617 1.40987 1.24488 1.17045 0.86668 0.79702 0.81135 0.81860 1.19657 1.20152 1.19482 1.20653 0.88138 0.85402 0.76014 1.90747 1.13766 1.87291 1.49378 1.22152 0.99442 0.92072 1.05552 1.21455 0.92768 0.93923 0.87935 0.88989 1.22720 0.99039 0.93229 1.01753 1.22358 1.00289 0.98395 0.98641 1.20911 0.79478 0.84264 0.85178 1.90765 1.44889 1.80844 1.25166 1.46363 1.56623 1.09768 1.24704 0.92358 0.90371 0.90828 0.90290 0.89774 0.91493 0.90756 0.91071 0.95346 0.82976 0.89496 0.93738 0.79683 0.91610 0.87008 0.88057 0.88676 0.89611 0.87627 0.87956 0.74589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.24 10.24 59.85 0.61 0.85 16 2 N -0.61 -4.03 2.87 -181.57 -0.52 -4.55 16 3 C 0.12 0.89 5.41 -4.04 -0.02 0.87 16 4 C -0.13 -1.27 5.80 -26.73 -0.15 -1.43 16 5 C 0.06 0.70 5.69 -3.82 -0.02 0.68 16 6 N -0.67 -10.42 6.13 -115.06 -0.70 -11.12 16 7 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 8 C 0.45 10.32 7.82 -10.99 -0.09 10.24 16 9 O -0.56 -15.35 15.78 5.55 0.09 -15.26 16 10 N -0.59 -14.19 5.09 -10.97 -0.06 -14.25 16 11 C -0.31 -8.72 10.16 -14.93 -0.15 -8.87 16 12 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 13 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 14 N -0.88 -25.83 13.96 55.50 0.77 -25.06 16 15 Si 0.88 19.42 27.74 -169.99 -4.71 14.71 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 19 C 0.51 3.90 7.48 -10.99 -0.08 3.82 16 20 O -0.54 -6.17 14.45 5.55 0.08 -6.09 16 21 C -0.15 -0.57 3.87 -27.89 -0.11 -0.68 16 22 C 0.15 0.73 3.02 -67.01 -0.20 0.52 16 23 H 0.09 0.56 7.99 -51.93 -0.42 0.15 16 24 C -0.13 -0.32 6.69 -25.10 -0.17 -0.49 16 25 C -0.16 -0.74 6.86 -26.74 -0.18 -0.92 16 26 C 0.52 4.78 8.43 -10.86 -0.09 4.69 16 27 O -0.54 -7.55 18.03 5.56 0.10 -7.45 16 28 N -0.72 -5.67 5.60 -52.77 -0.30 -5.97 16 29 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.08 0.25 8.07 -51.93 -0.42 -0.17 16 31 H 0.07 0.11 6.44 -51.93 -0.33 -0.23 16 32 H 0.08 0.47 8.07 -51.94 -0.42 0.05 16 33 H 0.08 0.78 7.42 -51.93 -0.39 0.39 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.35 5.79 8.43 -39.29 -0.33 5.46 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.37 7.79 5.76 -40.82 -0.24 7.55 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.11 0.17 7.40 -51.93 -0.38 -0.22 16 44 H 0.10 0.25 8.11 -51.93 -0.42 -0.17 16 45 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 46 H 0.09 0.10 7.91 -51.93 -0.41 -0.31 16 47 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.41 3.81 7.89 -40.82 -0.32 3.49 16 LS Contribution 404.11 15.07 6.09 6.09 Total: -1.00 -38.42 404.11 -7.81 -46.23 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -7.86 Total: 11.61 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: -0.79 Total: 11.10 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.80 Total: -60.94 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: 0.27 Total: -28.79 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.71 Total: 14.71 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -38.42 -7.81 -46.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733133836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.483 kcal (2) G-P(sol) polarization free energy of solvation -38.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds