Wall clock time and date at job start Sat Apr 11 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46505 * 119.99506 * 2 1 4 4 C 1.53001 * 109.46765 * 269.99718 * 3 2 1 5 5 C 1.53005 * 109.46907 * 180.02562 * 4 3 2 6 6 N 1.46895 * 109.47222 * 180.02562 * 5 4 3 7 7 C 1.46900 * 111.00188 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47215 * 180.02562 * 7 6 5 9 9 O 1.21292 * 120.00386 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00115 * 180.02562 * 8 7 6 11 11 C 1.37095 * 120.00378 * 179.97438 * 10 8 7 12 12 H 1.08002 * 120.00002 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00685 * 180.02562 * 11 10 8 14 14 N 1.31407 * 120.00700 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 119.99366 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46855 * 90.00203 * 15 13 11 17 17 H 1.48503 * 109.47029 * 209.99935 * 15 13 11 18 18 H 1.48494 * 109.47454 * 330.00105 * 15 13 11 19 19 C 1.34772 * 120.00140 * 179.97438 * 2 1 3 20 20 O 1.21287 * 119.99938 * 179.97438 * 19 2 1 21 21 C 1.50694 * 119.99975 * 0.02562 * 19 2 1 22 22 C 1.53000 * 109.47276 * 179.97438 * 21 19 2 23 23 H 1.09000 * 110.21727 * 304.52186 * 22 21 19 24 24 C 1.54474 * 110.24927 * 182.50055 * 22 21 19 25 25 C 1.54625 * 101.76763 * 215.58217 * 24 22 21 26 26 C 1.51286 * 104.19405 * 24.79834 * 25 24 22 27 27 O 1.21278 * 124.94126 * 163.77989 * 26 25 24 28 28 N 1.34417 * 110.11297 * 343.74897 * 26 25 24 29 29 H 1.09003 * 109.46652 * 270.00037 * 1 2 3 30 30 H 1.08997 * 109.47261 * 29.99748 * 1 2 3 31 31 H 1.08997 * 109.47339 * 150.00194 * 1 2 3 32 32 H 1.08988 * 109.47468 * 30.00132 * 3 2 1 33 33 H 1.09001 * 109.46416 * 150.00667 * 3 2 1 34 34 H 1.08994 * 109.47779 * 300.00149 * 4 3 2 35 35 H 1.09008 * 109.46942 * 60.00804 * 4 3 2 36 36 H 1.08999 * 109.47275 * 300.00879 * 5 4 3 37 37 H 1.09001 * 109.47128 * 60.00557 * 5 4 3 38 38 H 1.00905 * 111.00490 * 303.96052 * 6 5 4 39 39 H 1.08996 * 109.47292 * 299.99968 * 7 6 5 40 40 H 1.09001 * 109.47161 * 60.00286 * 7 6 5 41 41 H 0.97002 * 119.99831 * 0.02562 * 10 8 7 42 42 H 0.96997 * 120.00665 * 179.97438 * 14 13 11 43 43 H 1.09001 * 109.47795 * 60.00048 * 21 19 2 44 44 H 1.09003 * 109.47015 * 299.99877 * 21 19 2 45 45 H 1.09001 * 110.97106 * 97.46307 * 24 22 21 46 46 H 1.09007 * 110.96855 * 333.70166 * 24 22 21 47 47 H 1.09001 * 110.48978 * 266.11806 * 25 24 22 48 48 H 1.09000 * 110.49031 * 143.47236 * 25 24 22 49 49 H 0.97006 * 124.34688 * 179.62103 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2179 3.0352 -1.4426 6 7 3.4622 3.4596 -2.8275 7 6 4.1974 4.7308 -2.8668 8 6 4.4284 5.1334 -4.3005 9 8 4.0203 4.4309 -5.2011 10 7 5.0884 6.2742 -4.5821 11 6 5.2990 6.6403 -5.8863 12 1 4.9364 6.0143 -6.6882 13 6 5.9800 7.8162 -6.1767 14 7 6.1823 8.1668 -7.4269 15 14 6.6079 8.8986 -4.7897 16 1 7.9858 8.4836 -4.4230 17 1 6.6194 10.3156 -5.2341 18 1 5.7177 8.7571 -3.6096 19 6 2.1389 -1.1671 0.0005 20 8 3.3518 -1.1671 0.0001 21 6 1.3855 -2.4722 0.0005 22 6 2.3797 -3.6351 0.0005 23 1 3.0651 -3.5448 -0.8422 24 6 1.6266 -4.9824 -0.0627 25 6 2.5178 -5.8837 0.8229 26 6 3.2256 -4.9148 1.7444 27 8 3.7983 -5.2223 2.7682 28 7 3.1278 -3.6637 1.2628 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 3.0415 0.9509 -1.9564 35 1 1.4999 1.8408 -1.9564 36 1 2.6292 3.7950 -0.9285 37 1 4.1704 2.9045 -0.9289 38 1 3.9506 2.7436 -3.3444 39 1 3.6160 5.5024 -2.3622 40 1 5.1568 4.6113 -2.3635 41 1 5.4151 6.8359 -3.8619 42 1 6.6574 8.9879 -7.6296 43 1 0.7591 -2.5303 -0.8897 44 1 0.7585 -2.5298 0.8903 45 1 1.5852 -5.3586 -1.0849 46 1 0.6253 -4.8897 0.3581 47 1 3.2396 -6.4253 0.2116 48 1 1.9057 -6.5787 1.3977 49 1 3.5039 -2.8803 1.6940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733133836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:15 Heat of formation + Delta-G solvation = -138.937853 kcal Electronic energy + Delta-G solvation = -28491.017872 eV Core-core repulsion = 24258.490472 eV Total energy + Delta-G solvation = -4232.527399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.63519 -40.58272 -40.31344 -37.92458 -37.40254 -36.47900 -35.90427 -33.79229 -33.27398 -32.13772 -31.72149 -28.99370 -27.59439 -26.96958 -25.72986 -24.28520 -22.62440 -22.17168 -21.52670 -21.29924 -20.28673 -20.06057 -18.39605 -17.93234 -17.80736 -17.61239 -17.18796 -16.99761 -16.71620 -16.47678 -15.85944 -15.72126 -15.65018 -15.24371 -14.95988 -14.80595 -14.54163 -14.39000 -14.31296 -14.12681 -13.93760 -13.69170 -13.43877 -13.37459 -13.20569 -13.07147 -12.92716 -12.74860 -12.59800 -12.43133 -12.37681 -12.30017 -11.98611 -11.91261 -11.68418 -11.53176 -10.95150 -10.81259 -10.47242 -10.26872 -10.13154 -9.65945 -9.37748 -8.42747 -6.04067 1.29592 1.34759 1.43981 1.56298 1.62316 1.93104 2.03164 2.21995 2.42935 2.72431 3.13513 3.32993 3.40458 3.52458 3.69090 3.84382 4.00506 4.10769 4.15181 4.22908 4.29602 4.36081 4.38233 4.42115 4.42884 4.50803 4.53336 4.61219 4.70419 4.73961 4.81931 4.86852 4.89229 5.02829 5.10920 5.12372 5.22559 5.25549 5.51095 5.55894 5.82916 5.88648 6.03208 6.06686 6.30894 6.41216 6.57974 6.85969 7.16469 7.22011 7.37520 7.93970 8.74845 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.001501 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.295961 B =18649.057192 C =18872.535473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.616 5.616 3 C 0.119 3.881 4 C -0.118 4.118 5 C 0.065 3.935 6 N -0.688 5.688 7 C 0.062 3.938 8 C 0.447 3.553 9 O -0.616 6.616 10 N -0.590 5.590 11 C -0.332 4.332 12 H 0.055 0.945 13 C -0.014 4.014 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.258 1.258 17 H -0.274 1.274 18 H -0.230 1.230 19 C 0.499 3.501 20 O -0.585 6.585 21 C -0.141 4.141 22 C 0.138 3.862 23 H 0.077 0.923 24 C -0.114 4.114 25 C -0.151 4.151 26 C 0.502 3.498 27 O -0.600 6.600 28 N -0.719 5.719 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.034 0.966 38 H 0.340 0.660 39 H 0.118 0.882 40 H 0.074 0.926 41 H 0.390 0.610 42 H 0.280 0.720 43 H 0.145 0.855 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.109 0.891 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.646 -22.075 22.644 35.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.347 5.347 3 C -0.004 4.004 4 C -0.158 4.158 5 C -0.064 4.064 6 N -0.320 5.320 7 C -0.071 4.071 8 C 0.235 3.765 9 O -0.500 6.500 10 N -0.231 5.231 11 C -0.461 4.461 12 H 0.073 0.927 13 C -0.213 4.213 14 N -0.574 5.574 15 Si 0.785 3.215 16 H -0.183 1.183 17 H -0.199 1.199 18 H -0.153 1.153 19 C 0.289 3.711 20 O -0.465 6.465 21 C -0.181 4.181 22 C 0.033 3.967 23 H 0.095 0.905 24 C -0.151 4.151 25 C -0.190 4.190 26 C 0.290 3.710 27 O -0.482 6.482 28 N -0.372 5.372 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.052 0.948 38 H 0.158 0.842 39 H 0.136 0.864 40 H 0.092 0.908 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.162 0.838 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.128 0.872 47 H 0.132 0.868 48 H 0.133 0.867 49 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -16.627 -22.344 22.275 35.664 hybrid contribution 2.013 1.208 0.325 2.370 sum -14.614 -21.136 22.601 34.221 Atomic orbital electron populations 1.22140 0.76784 1.05139 1.03376 1.48027 1.08686 1.05480 1.72550 1.21369 0.97781 0.85415 0.95850 1.21746 1.00892 0.95652 0.97469 1.21953 0.99233 0.97264 0.87967 1.60116 1.52751 1.04720 1.14389 1.21643 0.99205 0.94651 0.91583 1.21008 0.81183 0.81988 0.92354 1.90539 1.54734 1.54651 1.50095 1.42026 1.52328 1.21966 1.06824 1.19021 1.36012 1.07419 0.83638 0.92721 1.26122 0.96748 0.98309 1.00094 1.69799 1.41826 1.25461 1.20299 0.85358 0.79875 0.77775 0.78469 1.18277 1.19887 1.15346 1.21414 0.87852 0.86866 0.75010 1.90728 1.16070 1.88052 1.51700 1.22193 0.98938 0.88990 1.07984 1.21678 0.92924 0.96236 0.85900 0.90527 1.22783 0.99071 0.90454 1.02791 1.22407 1.00601 0.97887 0.98143 1.21786 0.78915 0.85395 0.84911 1.90716 1.47664 1.81875 1.27956 1.46591 1.56146 1.09094 1.25371 0.90900 0.90187 0.88543 0.87880 0.91663 0.94054 0.90848 0.89008 0.94774 0.84186 0.86441 0.90801 0.77417 0.91093 0.83764 0.85968 0.86237 0.87238 0.86827 0.86655 0.75921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.21 10.24 127.77 1.31 1.52 16 2 N -0.62 -6.92 2.87 -846.76 -2.43 -9.35 16 3 C 0.12 1.67 5.41 86.38 0.47 2.14 16 4 C -0.12 -2.19 5.80 30.60 0.18 -2.01 16 5 C 0.06 1.32 5.69 86.31 0.49 1.81 16 6 N -0.69 -20.52 6.13 -517.94 -3.17 -23.69 16 7 C 0.06 1.90 6.17 85.56 0.53 2.42 16 8 C 0.45 20.47 7.82 87.66 0.69 21.16 16 9 O -0.62 -34.74 15.78 -3.07 -0.05 -34.79 16 10 N -0.59 -28.09 5.09 -306.99 -1.56 -29.65 16 11 C -0.33 -19.64 10.16 84.04 0.85 -18.78 16 12 H 0.05 3.86 7.39 -2.91 -0.02 3.83 16 13 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 14 N -0.93 -56.49 13.96 21.66 0.30 -56.18 16 15 Si 0.97 38.81 27.74 68.60 1.90 40.72 16 16 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 17 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 18 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 19 C 0.50 7.09 7.48 87.66 0.66 7.75 16 20 O -0.58 -13.90 14.45 -3.05 -0.04 -13.95 16 21 C -0.14 -0.68 3.87 29.85 0.12 -0.56 16 22 C 0.14 1.16 3.02 45.44 0.14 1.30 16 23 H 0.08 0.90 7.99 -2.39 -0.02 0.88 16 24 C -0.11 -0.18 6.69 31.65 0.21 0.03 16 25 C -0.15 -1.17 6.86 30.59 0.21 -0.96 16 26 C 0.50 9.50 8.43 87.90 0.74 10.24 16 27 O -0.60 -17.85 18.03 -3.02 -0.05 -17.90 16 28 N -0.72 -11.50 5.60 -439.45 -2.46 -13.96 16 29 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.08 0.26 8.07 -2.39 -0.02 0.24 16 31 H 0.10 -0.14 6.44 -2.39 -0.02 -0.15 16 32 H 0.10 0.94 8.07 -2.39 -0.02 0.92 16 33 H 0.06 1.18 7.42 -2.39 -0.02 1.16 16 34 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.34 11.30 8.43 -89.69 -0.76 10.54 16 39 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 41 H 0.39 15.29 5.76 -92.71 -0.53 14.75 16 42 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.14 -0.20 7.40 -2.39 -0.02 -0.22 16 44 H 0.12 0.14 8.11 -2.39 -0.02 0.12 16 45 H 0.12 -0.30 8.14 -2.39 -0.02 -0.32 16 46 H 0.11 -0.27 7.91 -2.38 -0.02 -0.29 16 47 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.12 0.62 8.14 -2.39 -0.02 0.61 16 49 H 0.40 7.95 7.89 -92.70 -0.73 7.22 16 Total: -1.00 -93.88 404.11 -1.61 -95.50 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: -1.09 Total: 37.51 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 7.05 Total: 25.74 kcal Atomic # 7 Polarization: -123.51 SS G_CDS: -9.32 Total: -132.83 kcal Atomic # 8 Polarization: -66.49 SS G_CDS: -0.15 Total: -66.64 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.90 Total: 40.72 kcal Total: -93.88 -1.61 -95.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733133836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.440 kcal (2) G-P(sol) polarization free energy of solvation -93.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds