Wall clock time and date at job start Sat Apr 11 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21272 * 120.00019 * 2 1 4 4 N 1.34780 * 119.99945 * 179.97438 * 2 1 3 5 5 C 1.46498 * 119.99982 * 0.02562 * 4 2 1 6 6 C 1.46501 * 119.99834 * 180.02562 * 4 2 1 7 7 C 1.50694 * 109.47024 * 90.00664 * 6 4 2 8 8 O 1.21285 * 119.99936 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00347 * 180.02562 * 7 6 4 10 10 C 1.46495 * 120.00573 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46990 * 325.00265 * 10 9 7 12 12 C 1.52997 * 109.47430 * 204.99724 * 10 9 7 13 13 N 1.46902 * 109.46793 * 55.00025 * 12 10 9 14 14 C 1.46902 * 110.99715 * 179.97438 * 13 12 10 15 15 C 1.50707 * 109.46915 * 180.02562 * 14 13 12 16 16 O 1.21288 * 119.99995 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99561 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99581 * 179.97438 * 17 15 14 19 19 H 1.08008 * 119.99952 * 0.02562 * 18 17 15 20 20 C 1.38951 * 120.00169 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99428 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00266 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47153 * 89.99901 * 22 20 18 24 24 H 1.48496 * 109.47370 * 210.00068 * 22 20 18 25 25 H 1.48501 * 109.46956 * 330.00179 * 22 20 18 26 26 C 1.53003 * 109.47194 * 84.99642 * 10 9 7 27 27 C 1.53001 * 117.51964 * 231.28709 * 26 10 9 28 28 C 1.52999 * 60.00190 * 107.47982 * 27 26 10 29 29 H 1.08996 * 109.47203 * 240.00009 * 1 2 3 30 30 H 1.08991 * 109.47233 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46943 * 120.00418 * 1 2 3 32 32 H 1.09004 * 109.47122 * 269.99503 * 5 4 2 33 33 H 1.09001 * 109.47460 * 29.99736 * 5 4 2 34 34 H 1.09003 * 109.47302 * 149.99658 * 5 4 2 35 35 H 1.08995 * 109.47306 * 330.00452 * 6 4 2 36 36 H 1.09005 * 109.46871 * 210.00403 * 6 4 2 37 37 H 0.97002 * 119.99812 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47132 * 174.99771 * 12 10 9 39 39 H 1.08998 * 109.47469 * 295.00258 * 12 10 9 40 40 H 1.00897 * 111.00281 * 56.04809 * 13 12 10 41 41 H 1.09004 * 109.47373 * 299.99472 * 14 13 12 42 42 H 1.08996 * 109.47349 * 60.00050 * 14 13 12 43 43 H 0.96998 * 120.00137 * 0.02562 * 17 15 14 44 44 H 0.97010 * 119.99839 * 179.97438 * 21 20 18 45 45 H 1.09002 * 115.54973 * 85.58492 * 26 10 9 46 46 H 1.09001 * 117.49733 * 214.97413 * 27 26 10 47 47 H 1.08995 * 117.49577 * 359.97438 * 27 26 10 48 48 H 1.09004 * 117.50150 * 252.51496 * 28 27 26 49 49 H 1.09004 * 117.49681 * 107.48417 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4484 -2.4359 0.0005 6 6 3.6459 -1.1672 0.0011 7 6 4.1477 -1.1670 1.4221 8 8 3.3591 -1.1665 2.3436 9 7 5.4726 -1.1665 1.6689 10 6 5.9604 -1.1657 3.0503 11 1 5.2874 -0.5763 3.6730 12 6 7.3628 -0.5557 3.0957 13 7 7.3360 0.7793 2.4832 14 6 8.6684 1.3974 2.5096 15 6 8.6015 2.7626 1.8749 16 8 7.5477 3.1795 1.4427 17 7 9.7129 3.5199 1.7867 18 6 9.6521 4.7617 1.2088 19 1 8.7135 5.1332 0.8246 20 6 10.7980 5.5422 1.1173 21 7 11.9398 5.0903 1.5851 22 14 10.7151 7.2344 0.3306 23 1 10.4071 8.2491 1.3702 24 1 12.0218 7.5521 -0.2993 25 1 9.6504 7.2474 -0.7046 26 6 6.0122 -2.6025 3.5737 27 6 5.3311 -2.8921 4.9128 28 6 4.7000 -3.3887 3.6105 29 1 -0.3633 -0.5138 0.8899 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.2664 -2.7504 1.0282 33 1 0.4962 -2.3057 -0.5137 34 1 2.0376 -3.1957 -0.5130 35 1 4.0095 -0.2773 -0.5127 36 1 4.0095 -2.0573 -0.5125 37 1 6.1033 -1.1665 0.9319 38 1 7.6898 -0.4734 4.1322 39 1 8.0546 -1.1938 2.5459 40 1 6.6545 1.3707 2.9347 41 1 9.0041 1.4933 3.5422 42 1 9.3696 0.7729 1.9561 43 1 10.5559 3.1860 2.1313 44 1 12.7400 5.6351 1.5209 45 1 6.9233 -3.1545 3.3427 46 1 5.7941 -3.6344 5.5628 47 1 4.8463 -2.0588 5.4214 48 1 3.7999 -2.8821 3.2621 49 1 4.7480 -4.4578 3.4037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733166014.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:18 Heat of formation + Delta-G solvation = -72.668187 kcal Electronic energy + Delta-G solvation = -29888.406729 eV Core-core repulsion = 25658.752997 eV Total energy + Delta-G solvation = -4229.653731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.49117 -39.43485 -38.25475 -37.43549 -35.60004 -35.48070 -33.99431 -33.52458 -31.22545 -31.00693 -29.58769 -28.02906 -26.49181 -25.82612 -24.09003 -22.51727 -22.16678 -21.29173 -20.39770 -19.44917 -19.17841 -17.87959 -17.41984 -17.16971 -16.82596 -16.19174 -15.99773 -15.75491 -15.35217 -15.16076 -14.70300 -14.49131 -14.33403 -13.94181 -13.77027 -13.50366 -13.34558 -13.28397 -13.11505 -13.00345 -12.89017 -12.62133 -12.34367 -12.05370 -12.00241 -11.88709 -11.53507 -11.47353 -11.42584 -11.34454 -11.01473 -10.48291 -10.36978 -10.33773 -10.18761 -10.05716 -9.95332 -9.48266 -8.93858 -8.84022 -8.45060 -8.07853 -7.93489 -6.39439 -3.79938 2.42626 2.65584 2.72162 3.20263 3.23596 3.28680 3.35398 3.81423 3.93387 4.04364 4.26836 4.41183 4.69445 4.70387 4.75767 4.80741 4.90328 4.94632 5.00680 5.04502 5.05949 5.17978 5.24256 5.25423 5.30374 5.31668 5.34651 5.41172 5.55200 5.56622 5.64093 5.77813 5.79911 5.85350 5.96918 6.03304 6.12301 6.20221 6.27393 6.52595 7.13565 7.16084 7.57149 7.57988 7.61246 8.04362 8.09079 8.28944 8.64032 9.20820 9.56867 10.08741 10.78385 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010868 B = 0.002542 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.828540 B =11010.588324 C =13201.037201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.513 3.487 3 O -0.532 6.532 4 N -0.603 5.603 5 C 0.081 3.919 6 C 0.094 3.906 7 C 0.504 3.496 8 O -0.540 6.540 9 N -0.702 5.702 10 C 0.181 3.819 11 H 0.085 0.915 12 C 0.052 3.948 13 N -0.666 5.666 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.579 6.579 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C -0.167 4.167 27 C -0.172 4.172 28 C -0.181 4.181 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.406 0.594 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.351 0.649 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.104 0.896 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.118 0.882 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.647 -22.481 0.126 27.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.302 3.698 3 O -0.407 6.407 4 N -0.337 5.337 5 C -0.062 4.062 6 C -0.032 4.032 7 C 0.289 3.711 8 O -0.417 6.417 9 N -0.353 5.353 10 C 0.076 3.924 11 H 0.103 0.897 12 C -0.078 4.078 13 N -0.299 5.299 14 C -0.082 4.082 15 C 0.225 3.775 16 O -0.463 6.463 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.187 4.187 27 C -0.209 4.209 28 C -0.218 4.218 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.135 0.865 36 H 0.123 0.877 37 H 0.241 0.759 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.171 0.829 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.122 0.878 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.136 0.864 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.355 -21.745 -0.166 27.209 hybrid contribution 1.213 0.672 0.569 1.499 sum -15.142 -21.073 0.403 25.952 Atomic orbital electron populations 1.21916 0.91596 1.05469 1.03920 1.20827 0.90730 0.82960 0.75313 1.90798 1.70571 1.30915 1.48439 1.47407 1.05170 1.06861 1.74283 1.21827 0.97030 0.84977 1.02334 1.21310 0.81465 1.05744 0.94709 1.21035 0.82595 0.75533 0.91891 1.90597 1.55476 1.49708 1.45960 1.45752 1.06661 1.74263 1.08578 1.20454 0.95286 0.93220 0.83462 0.89655 1.22233 0.95581 0.91845 0.98152 1.60069 1.07101 1.02990 1.59715 1.21677 0.91386 0.95775 0.99327 1.19814 0.85216 0.86714 0.85740 1.90557 1.29659 1.73597 1.52465 1.41860 1.09274 1.15889 1.53146 1.19713 0.96829 0.91652 1.34550 0.87930 1.25254 0.94737 1.00174 0.97814 1.69615 0.99698 1.38566 1.46594 0.85860 0.77574 0.81600 0.79293 1.20439 1.20940 1.19362 1.22647 0.97376 0.96971 1.01715 1.22909 1.04002 1.03525 0.90509 1.23250 0.97871 0.99389 1.01285 0.89339 0.89023 0.89520 0.92148 0.90745 0.91128 0.86513 0.87715 0.75945 0.93824 0.90420 0.82910 0.93866 0.89587 0.77510 0.91923 0.87770 0.89045 0.88790 0.86442 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 8.87 36.01 0.32 -1.01 16 2 C 0.51 6.48 7.78 -10.98 -0.09 6.40 16 3 O -0.53 -9.63 16.66 5.56 0.09 -9.54 16 4 N -0.60 -6.10 2.36 -182.95 -0.43 -6.54 16 5 C 0.08 0.48 10.28 59.85 0.62 1.09 16 6 C 0.09 0.97 5.93 -5.20 -0.03 0.94 16 7 C 0.50 6.37 7.23 -10.99 -0.08 6.29 16 8 O -0.54 -8.35 13.46 5.55 0.07 -8.28 16 9 N -0.70 -7.96 4.78 -53.81 -0.26 -8.21 16 10 C 0.18 2.07 2.51 -67.93 -0.17 1.90 16 11 H 0.09 1.20 7.34 -51.93 -0.38 0.81 16 12 C 0.05 0.60 5.23 -3.82 -0.02 0.58 16 13 N -0.67 -10.53 5.85 -115.05 -0.67 -11.20 16 14 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 15 C 0.44 10.51 7.82 -10.98 -0.09 10.42 16 16 O -0.58 -16.17 15.78 5.55 0.09 -16.08 16 17 N -0.56 -14.49 5.29 -10.96 -0.06 -14.55 16 18 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 19 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 22 Si 0.93 21.47 29.55 -169.99 -5.02 16.44 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.17 -1.61 5.36 -90.61 -0.49 -2.10 16 27 C -0.17 -1.64 10.18 -26.73 -0.27 -1.91 16 28 C -0.18 -1.81 9.73 -26.73 -0.26 -2.07 16 29 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 30 H 0.09 0.77 8.12 -51.93 -0.42 0.34 16 31 H 0.09 0.43 7.40 -51.93 -0.38 0.05 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.28 6.44 -51.93 -0.33 -0.06 16 34 H 0.07 0.29 7.89 -51.93 -0.41 -0.12 16 35 H 0.12 1.42 7.42 -51.93 -0.39 1.03 16 36 H 0.10 0.67 7.89 -51.93 -0.41 0.26 16 37 H 0.41 4.11 8.60 -40.82 -0.35 3.76 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.35 6.24 8.43 -39.29 -0.33 5.91 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.10 0.89 8.11 -51.93 -0.42 0.47 16 46 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 48 H 0.12 1.44 5.02 -51.93 -0.26 1.18 16 49 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 409.57 15.07 6.17 6.17 Total: -1.00 -37.34 409.57 -7.84 -45.19 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -7.72 Total: 17.42 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: -0.83 Total: 13.28 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.70 Total: -64.61 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: 0.26 Total: -33.90 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.34 -7.84 -45.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733166014.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.482 kcal (2) G-P(sol) polarization free energy of solvation -37.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds