Wall clock time and date at job start Sat Apr 11 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21272 * 120.00019 * 2 1 4 4 N 1.34780 * 119.99945 * 179.97438 * 2 1 3 5 5 C 1.46498 * 119.99982 * 0.02562 * 4 2 1 6 6 C 1.46501 * 119.99834 * 180.02562 * 4 2 1 7 7 C 1.50694 * 109.47024 * 90.00664 * 6 4 2 8 8 O 1.21285 * 119.99936 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00347 * 180.02562 * 7 6 4 10 10 C 1.46495 * 120.00573 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46990 * 325.00265 * 10 9 7 12 12 C 1.52997 * 109.47430 * 204.99724 * 10 9 7 13 13 N 1.46902 * 109.46793 * 55.00025 * 12 10 9 14 14 C 1.46902 * 110.99715 * 179.97438 * 13 12 10 15 15 C 1.50707 * 109.46915 * 180.02562 * 14 13 12 16 16 O 1.21288 * 119.99995 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99561 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99581 * 179.97438 * 17 15 14 19 19 H 1.08008 * 119.99952 * 0.02562 * 18 17 15 20 20 C 1.38951 * 120.00169 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99428 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00266 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47153 * 89.99901 * 22 20 18 24 24 H 1.48496 * 109.47370 * 210.00068 * 22 20 18 25 25 H 1.48501 * 109.46956 * 330.00179 * 22 20 18 26 26 C 1.53003 * 109.47194 * 84.99642 * 10 9 7 27 27 C 1.53001 * 117.51964 * 231.28709 * 26 10 9 28 28 C 1.52999 * 60.00190 * 107.47982 * 27 26 10 29 29 H 1.08996 * 109.47203 * 240.00009 * 1 2 3 30 30 H 1.08991 * 109.47233 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46943 * 120.00418 * 1 2 3 32 32 H 1.09004 * 109.47122 * 269.99503 * 5 4 2 33 33 H 1.09001 * 109.47460 * 29.99736 * 5 4 2 34 34 H 1.09003 * 109.47302 * 149.99658 * 5 4 2 35 35 H 1.08995 * 109.47306 * 330.00452 * 6 4 2 36 36 H 1.09005 * 109.46871 * 210.00403 * 6 4 2 37 37 H 0.97002 * 119.99812 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47132 * 174.99771 * 12 10 9 39 39 H 1.08998 * 109.47469 * 295.00258 * 12 10 9 40 40 H 1.00897 * 111.00281 * 56.04809 * 13 12 10 41 41 H 1.09004 * 109.47373 * 299.99472 * 14 13 12 42 42 H 1.08996 * 109.47349 * 60.00050 * 14 13 12 43 43 H 0.96998 * 120.00137 * 0.02562 * 17 15 14 44 44 H 0.97010 * 119.99839 * 179.97438 * 21 20 18 45 45 H 1.09002 * 115.54973 * 85.58492 * 26 10 9 46 46 H 1.09001 * 117.49733 * 214.97413 * 27 26 10 47 47 H 1.08995 * 117.49577 * 359.97438 * 27 26 10 48 48 H 1.09004 * 117.50150 * 252.51496 * 28 27 26 49 49 H 1.09004 * 117.49681 * 107.48417 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4484 -2.4359 0.0005 6 6 3.6459 -1.1672 0.0011 7 6 4.1477 -1.1670 1.4221 8 8 3.3591 -1.1665 2.3436 9 7 5.4726 -1.1665 1.6689 10 6 5.9604 -1.1657 3.0503 11 1 5.2874 -0.5763 3.6730 12 6 7.3628 -0.5557 3.0957 13 7 7.3360 0.7793 2.4832 14 6 8.6684 1.3974 2.5096 15 6 8.6015 2.7626 1.8749 16 8 7.5477 3.1795 1.4427 17 7 9.7129 3.5199 1.7867 18 6 9.6521 4.7617 1.2088 19 1 8.7135 5.1332 0.8246 20 6 10.7980 5.5422 1.1173 21 7 11.9398 5.0903 1.5851 22 14 10.7151 7.2344 0.3306 23 1 10.4071 8.2491 1.3702 24 1 12.0218 7.5521 -0.2993 25 1 9.6504 7.2474 -0.7046 26 6 6.0122 -2.6025 3.5737 27 6 5.3311 -2.8921 4.9128 28 6 4.7000 -3.3887 3.6105 29 1 -0.3633 -0.5138 0.8899 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.2664 -2.7504 1.0282 33 1 0.4962 -2.3057 -0.5137 34 1 2.0376 -3.1957 -0.5130 35 1 4.0095 -0.2773 -0.5127 36 1 4.0095 -2.0573 -0.5125 37 1 6.1033 -1.1665 0.9319 38 1 7.6898 -0.4734 4.1322 39 1 8.0546 -1.1938 2.5459 40 1 6.6545 1.3707 2.9347 41 1 9.0041 1.4933 3.5422 42 1 9.3696 0.7729 1.9561 43 1 10.5559 3.1860 2.1313 44 1 12.7400 5.6351 1.5209 45 1 6.9233 -3.1545 3.3427 46 1 5.7941 -3.6344 5.5628 47 1 4.8463 -2.0588 5.4214 48 1 3.7999 -2.8821 3.2621 49 1 4.7480 -4.4578 3.4037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733166014.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:17 Heat of formation + Delta-G solvation = -102.870355 kcal Electronic energy + Delta-G solvation = -29889.716393 eV Core-core repulsion = 25658.752997 eV Total energy + Delta-G solvation = -4230.963395 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43127 -40.43249 -40.08071 -38.42138 -36.76174 -36.41498 -35.89214 -34.73782 -33.27718 -31.86325 -30.63258 -28.84088 -27.82755 -26.79772 -25.76257 -23.39519 -23.11225 -22.19059 -21.40109 -20.99111 -20.27029 -19.91409 -18.40357 -18.10723 -17.88237 -17.54784 -17.09459 -16.83728 -16.50302 -16.34885 -16.11992 -15.91748 -15.77311 -15.20274 -14.99849 -14.67798 -14.50712 -14.40998 -14.22048 -13.84850 -13.61530 -13.51718 -13.41147 -13.27398 -13.08220 -13.07561 -12.79779 -12.78174 -12.69060 -12.43725 -12.30986 -12.23425 -12.13611 -11.52669 -11.31437 -11.15452 -11.02012 -10.93145 -10.37191 -10.02711 -9.89103 -9.70710 -9.37193 -8.48400 -5.96833 1.36148 1.39929 1.50596 1.52824 1.68546 1.93743 2.04772 2.27599 2.38211 2.84022 3.05282 3.18914 3.46344 3.70091 3.72236 3.86955 3.99439 4.13197 4.18263 4.23125 4.27365 4.32779 4.36795 4.41753 4.46455 4.48270 4.52315 4.56872 4.60069 4.69638 4.77126 4.82098 4.91688 4.93740 5.03972 5.07334 5.26797 5.37902 5.39366 5.39706 5.58784 5.84942 6.07349 6.24971 6.34083 6.59290 6.64529 7.11851 7.14220 7.34167 7.55312 8.11904 8.68981 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010868 B = 0.002542 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.828540 B =11010.588324 C =13201.037201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.497 3.503 3 O -0.604 6.604 4 N -0.600 5.600 5 C 0.075 3.925 6 C 0.092 3.908 7 C 0.498 3.502 8 O -0.573 6.573 9 N -0.696 5.696 10 C 0.184 3.816 11 H 0.052 0.948 12 C 0.058 3.942 13 N -0.678 5.678 14 C 0.067 3.933 15 C 0.435 3.565 16 O -0.626 6.626 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.074 0.926 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.272 1.272 24 H -0.267 1.267 25 H -0.275 1.275 26 C -0.159 4.159 27 C -0.172 4.172 28 C -0.182 4.182 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.053 0.947 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.150 0.850 37 H 0.413 0.587 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.336 0.664 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.128 0.872 46 H 0.112 0.888 47 H 0.077 0.923 48 H 0.093 0.907 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.016 -25.070 -0.160 29.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.288 3.712 3 O -0.485 6.485 4 N -0.332 5.332 5 C -0.066 4.066 6 C -0.035 4.035 7 C 0.284 3.716 8 O -0.453 6.453 9 N -0.347 5.347 10 C 0.078 3.922 11 H 0.070 0.930 12 C -0.071 4.071 13 N -0.310 5.310 14 C -0.065 4.065 15 C 0.223 3.777 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.092 0.908 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.814 3.186 23 H -0.197 1.197 24 H -0.192 1.192 25 H -0.200 1.200 26 C -0.178 4.178 27 C -0.209 4.209 28 C -0.219 4.219 29 H 0.123 0.877 30 H 0.100 0.900 31 H 0.141 0.859 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.167 0.833 37 H 0.249 0.751 38 H 0.075 0.925 39 H 0.121 0.879 40 H 0.153 0.847 41 H 0.084 0.916 42 H 0.132 0.868 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.146 0.854 46 H 0.130 0.870 47 H 0.095 0.905 48 H 0.111 0.889 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.690 -24.419 -0.444 29.029 hybrid contribution 0.984 1.404 0.689 1.848 sum -14.705 -23.015 0.245 27.313 Atomic orbital electron populations 1.21931 0.87988 1.05737 1.06358 1.21776 0.92700 0.82617 0.74067 1.90759 1.72224 1.33483 1.52043 1.47615 1.05288 1.07804 1.72482 1.22124 0.98351 0.83401 1.02713 1.21419 0.82046 1.06653 0.93344 1.21470 0.82725 0.74897 0.92499 1.90583 1.56311 1.51318 1.47120 1.45749 1.06517 1.73563 1.08872 1.20384 0.94449 0.94235 0.83095 0.92978 1.22316 0.96066 0.89642 0.99051 1.60079 1.05883 1.04284 1.60713 1.21547 0.92836 0.91973 1.00142 1.20991 0.83829 0.88579 0.84317 1.90530 1.31282 1.75214 1.54200 1.41913 1.10091 1.15542 1.53466 1.19626 0.96410 0.93620 1.36744 0.90760 1.25999 0.94082 1.03310 0.97721 1.69663 1.00059 1.39758 1.46489 0.84964 0.77922 0.77318 0.78359 1.19716 1.19190 1.20025 1.22597 0.98133 0.95561 1.01548 1.22954 1.03868 1.03455 0.90646 1.23179 0.97022 1.00147 1.01564 0.87683 0.89996 0.85883 0.92815 0.88032 0.88637 0.88882 0.83264 0.75113 0.92465 0.87898 0.84664 0.91565 0.86831 0.76854 0.91241 0.85421 0.86961 0.90464 0.88895 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 8.87 71.24 0.63 -1.76 16 2 C 0.50 12.97 7.78 87.66 0.68 13.65 16 3 O -0.60 -23.59 16.66 -3.00 -0.05 -23.64 16 4 N -0.60 -11.90 2.36 -851.14 -2.01 -13.91 16 5 C 0.08 0.71 10.28 127.77 1.31 2.03 16 6 C 0.09 1.90 5.93 85.63 0.51 2.41 16 7 C 0.50 12.85 7.23 87.66 0.63 13.49 16 8 O -0.57 -18.50 13.46 -3.05 -0.04 -18.54 16 9 N -0.70 -15.62 4.78 -442.54 -2.12 -17.74 16 10 C 0.18 4.10 2.51 44.99 0.11 4.21 16 11 H 0.05 1.53 7.34 -2.38 -0.02 1.51 16 12 C 0.06 1.23 5.23 86.30 0.45 1.69 16 13 N -0.68 -21.08 5.85 -517.92 -3.03 -24.11 16 14 C 0.07 2.24 6.17 85.56 0.53 2.77 16 15 C 0.44 21.13 7.82 87.66 0.69 21.81 16 16 O -0.63 -36.34 15.78 -3.05 -0.05 -36.39 16 17 N -0.57 -29.86 5.29 -306.97 -1.62 -31.48 16 18 C -0.33 -19.50 9.68 84.04 0.81 -18.69 16 19 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 21 N -0.92 -50.03 13.05 21.66 0.28 -49.75 16 22 Si 0.99 44.03 29.55 68.60 2.03 46.06 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 C -0.16 -2.74 5.36 -10.79 -0.06 -2.80 16 27 C -0.17 -3.03 10.18 30.59 0.31 -2.72 16 28 C -0.18 -3.38 9.73 30.60 0.30 -3.08 16 29 H 0.10 1.22 8.11 -2.39 -0.02 1.20 16 30 H 0.08 1.39 8.12 -2.39 -0.02 1.37 16 31 H 0.12 0.89 7.40 -2.38 -0.02 0.88 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 0.42 6.44 -2.39 -0.02 0.40 16 34 H 0.10 0.45 7.89 -2.39 -0.02 0.44 16 35 H 0.09 2.41 7.42 -2.39 -0.02 2.39 16 36 H 0.15 1.60 7.89 -2.38 -0.02 1.58 16 37 H 0.41 8.00 8.60 -92.71 -0.80 7.20 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.34 12.28 8.43 -89.70 -0.76 11.52 16 41 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 43 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 44 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 45 H 0.13 1.67 8.11 -2.39 -0.02 1.65 16 46 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.08 1.62 8.05 -2.39 -0.02 1.60 16 48 H 0.09 2.28 5.02 -2.39 -0.01 2.27 16 49 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -87.04 409.57 -0.52 -87.56 By element: Atomic # 1 Polarization: 50.36 SS G_CDS: -1.29 Total: 49.07 kcal Atomic # 6 Polarization: 25.47 SS G_CDS: 7.38 Total: 32.85 kcal Atomic # 7 Polarization: -128.48 SS G_CDS: -8.50 Total: -136.98 kcal Atomic # 8 Polarization: -78.42 SS G_CDS: -0.14 Total: -78.56 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -87.04 -0.52 -87.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733166014.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.312 kcal (2) G-P(sol) polarization free energy of solvation -87.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds