Wall clock time and date at job start Sat Apr 11 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46924 * 2 1 4 4 C 1.34781 * 119.99657 * 180.02562 * 3 2 1 5 5 O 1.21271 * 120.00300 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99739 * 180.02562 * 4 3 2 7 7 C 1.50696 * 109.47166 * 180.02562 * 6 4 3 8 8 O 1.21284 * 120.00037 * 359.97438 * 7 6 4 9 9 N 1.34769 * 120.00043 * 180.02562 * 7 6 4 10 10 C 1.47430 * 125.65103 * 354.94955 * 9 7 6 11 11 C 1.54903 * 104.83558 * 204.09685 * 10 9 7 12 12 C 1.55159 * 101.58406 * 322.99307 * 11 10 9 13 13 C 1.47026 * 125.64829 * 174.64831 * 9 7 6 14 14 H 1.09002 * 109.88218 * 59.55417 * 13 9 7 15 15 C 1.53000 * 109.88032 * 298.38903 * 13 9 7 16 16 N 1.46897 * 109.46763 * 175.60328 * 15 13 9 17 17 C 1.46902 * 110.99929 * 184.82440 * 16 15 13 18 18 C 1.50704 * 109.47406 * 179.97438 * 17 16 15 19 19 O 1.21289 * 119.99590 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00161 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99911 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00037 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00042 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00316 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99712 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47102 * 90.00029 * 25 23 21 27 27 H 1.48496 * 109.47278 * 209.99921 * 25 23 21 28 28 H 1.48493 * 109.47361 * 330.00290 * 25 23 21 29 29 H 1.09001 * 109.47172 * 299.99775 * 1 2 3 30 30 H 1.08997 * 109.47503 * 60.00102 * 1 2 3 31 31 H 1.09004 * 109.46806 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46707 * 239.99967 * 2 1 3 33 33 H 1.08997 * 109.47027 * 120.00135 * 2 1 3 34 34 H 0.96996 * 120.00191 * 0.02562 * 3 2 1 35 35 H 1.09006 * 109.46906 * 299.99910 * 6 4 3 36 36 H 1.09001 * 109.47363 * 59.99126 * 6 4 3 37 37 H 1.09000 * 110.36456 * 322.93578 * 10 9 7 38 38 H 1.08996 * 110.36643 * 85.25323 * 10 9 7 39 39 H 1.09002 * 111.00581 * 81.06517 * 11 10 9 40 40 H 1.09000 * 111.00912 * 204.88019 * 11 10 9 41 41 H 1.08993 * 110.72681 * 153.86170 * 12 11 10 42 42 H 1.08999 * 110.71644 * 276.96417 * 12 11 10 43 43 H 1.08999 * 109.47315 * 295.60522 * 15 13 9 44 44 H 1.08996 * 109.47007 * 55.60489 * 15 13 9 45 45 H 1.00893 * 111.00501 * 308.77911 * 16 15 13 46 46 H 1.08994 * 109.47627 * 300.00517 * 17 16 15 47 47 H 1.09003 * 109.47162 * 60.00548 * 17 16 15 48 48 H 0.97000 * 119.99791 * 0.02562 * 20 18 17 49 49 H 0.96996 * 120.00088 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3435 1.6275 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8458 3.0483 0.0001 7 6 5.3527 3.0484 -0.0013 8 8 5.9592 1.9980 -0.0022 9 7 6.0265 4.2155 -0.0006 10 6 5.4226 5.5565 -0.1039 11 6 6.5489 6.4561 -0.6711 12 6 7.8002 5.8718 0.0362 13 6 7.4853 4.3627 0.1097 14 1 7.9736 3.8434 -0.7149 15 6 7.9663 3.7924 1.4455 16 7 9.4331 3.8479 1.5017 17 6 9.9379 3.2041 2.7219 18 6 11.4428 3.2799 2.7442 19 8 12.0364 3.8178 1.8335 20 7 12.1291 2.7500 3.7760 21 6 13.4981 2.8195 3.7965 22 1 14.0267 3.2984 2.9856 23 6 14.2056 2.2727 4.8601 24 7 15.5179 2.3388 4.8795 25 14 13.2913 1.4436 6.2623 26 1 13.1207 0.0003 5.9571 27 1 14.0687 1.5954 7.5184 28 1 11.9577 2.0758 6.4260 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.3880 2.1185 0.0004 35 1 3.4819 3.5627 -0.8895 36 1 3.4828 3.5617 0.8904 37 1 4.5723 5.5380 -0.7856 38 1 5.1136 5.9101 0.8797 39 1 6.6264 6.3496 -1.7531 40 1 6.3935 7.4986 -0.3933 41 1 8.6974 6.0525 -0.5558 42 1 7.9089 6.2913 1.0364 43 1 7.5487 4.3802 2.2630 44 1 7.6380 2.7571 1.5377 45 1 9.8426 3.4332 0.6782 46 1 9.5349 3.7155 3.5959 47 1 9.6269 2.1595 2.7367 48 1 11.6543 2.3195 4.5041 49 1 16.0118 1.9574 5.6222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733338995.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:22 Heat of formation + Delta-G solvation = -95.226618 kcal Electronic energy + Delta-G solvation = -29302.757559 eV Core-core repulsion = 25072.125620 eV Total energy + Delta-G solvation = -4230.631938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.77184 -39.60505 -38.38118 -37.50949 -35.53463 -35.29055 -33.82754 -32.48208 -31.61090 -31.42030 -30.48052 -29.41386 -26.91060 -24.85581 -23.91068 -23.17492 -22.50483 -21.56860 -20.73898 -19.48313 -19.07577 -18.22879 -17.80082 -16.91758 -16.76437 -16.26472 -16.13444 -15.72844 -15.48648 -15.19240 -14.99810 -14.71109 -14.14638 -14.02494 -13.94484 -13.72919 -13.66331 -13.27004 -13.11104 -13.04453 -12.87710 -12.56657 -12.47802 -12.32247 -12.28429 -11.99149 -11.88925 -11.70446 -11.62966 -11.47137 -11.14632 -10.87974 -10.87057 -10.54201 -10.37118 -9.92378 -9.61172 -9.51400 -9.44749 -8.86146 -8.49440 -8.13442 -8.05413 -6.25920 -3.76921 2.29973 2.38829 2.52259 3.00454 3.07971 3.12350 3.19602 3.81427 4.00436 4.15267 4.22935 4.29708 4.35160 4.52672 4.58430 4.62713 4.64604 4.78668 4.80435 4.85197 4.91923 4.96781 5.11057 5.21109 5.27153 5.34186 5.36879 5.42888 5.52337 5.54762 5.60913 5.72549 5.78359 5.83303 5.90665 5.94008 6.00939 6.03322 6.16009 6.25185 7.06661 7.13366 7.30733 7.63046 7.64895 7.89568 8.08440 8.20239 8.65759 9.00521 9.48386 9.89186 10.87281 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.002126 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.622785 B =13165.844972 C =15003.990931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.738 5.738 4 C 0.509 3.491 5 O -0.489 6.489 6 C -0.160 4.160 7 C 0.526 3.474 8 O -0.488 6.488 9 N -0.619 5.619 10 C 0.098 3.902 11 C -0.137 4.137 12 C -0.114 4.114 13 C 0.142 3.858 14 H 0.077 0.923 15 C 0.049 3.951 16 N -0.663 5.663 17 C 0.049 3.951 18 C 0.452 3.548 19 O -0.564 6.564 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.398 0.602 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.041 0.959 45 H 0.351 0.649 46 H 0.086 0.914 47 H 0.045 0.955 48 H 0.370 0.630 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.500 5.313 -9.408 37.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.393 5.393 4 C 0.293 3.707 5 O -0.361 6.361 6 C -0.203 4.203 7 C 0.312 3.688 8 O -0.360 6.360 9 N -0.357 5.357 10 C -0.024 4.024 11 C -0.175 4.175 12 C -0.152 4.152 13 C 0.038 3.962 14 H 0.095 0.905 15 C -0.081 4.081 16 N -0.296 5.296 17 C -0.084 4.084 18 C 0.238 3.762 19 O -0.446 6.446 20 N -0.231 5.231 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.232 0.768 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.170 0.830 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.203 0.797 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -33.975 4.858 -9.655 35.653 hybrid contribution -1.192 -1.147 1.134 2.006 sum -35.168 3.711 -8.520 36.375 Atomic orbital electron populations 1.22003 0.94393 1.03336 1.02440 1.21281 0.94124 0.82891 1.02598 1.46035 1.06855 1.08937 1.77519 1.20033 0.82348 0.90842 0.77517 1.90897 1.54348 1.45409 1.45398 1.21574 0.95240 0.97083 1.06415 1.19578 0.88674 0.82775 0.77823 1.90897 1.69142 1.29674 1.46276 1.48581 1.07552 1.05562 1.73969 1.22351 0.96765 0.82468 1.00865 1.22826 0.94744 0.99177 1.00711 1.22601 0.97879 0.92405 1.02338 1.21512 0.79623 0.97307 0.97711 0.90540 1.22278 0.89020 1.00033 0.96788 1.60081 1.03985 1.60558 1.04938 1.21692 0.94913 0.97462 0.94320 1.19700 0.88060 0.84006 0.84426 1.90554 1.70121 1.46733 1.37203 1.42204 1.07644 1.52881 1.20396 1.19435 0.79359 1.35919 1.08531 0.86273 1.25030 0.95472 0.97817 0.97862 1.69620 1.05375 1.45035 1.32236 0.86674 0.79707 0.80410 0.82631 1.19651 1.20198 1.19487 0.91968 0.91989 0.90737 0.91487 0.91461 0.76821 0.86319 0.86173 0.90810 0.91216 0.90671 0.89736 0.89398 0.89801 0.91166 0.94056 0.83007 0.89598 0.93658 0.79691 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 10.03 37.16 0.37 -0.13 16 2 C 0.11 0.72 6.39 -4.04 -0.03 0.69 16 3 N -0.74 -4.46 5.56 -60.29 -0.33 -4.79 16 4 C 0.51 5.06 7.82 -10.98 -0.09 4.97 16 5 O -0.49 -7.84 14.18 -18.95 -0.27 -8.11 16 6 C -0.16 -1.08 5.28 -29.04 -0.15 -1.23 16 7 C 0.53 6.17 7.56 -10.99 -0.08 6.09 16 8 O -0.49 -8.49 13.37 -18.96 -0.25 -8.74 16 9 N -0.62 -6.04 3.06 -163.01 -0.50 -6.54 16 10 C 0.10 0.56 6.65 -2.53 -0.02 0.54 16 11 C -0.14 -0.83 7.09 -24.58 -0.17 -1.01 16 12 C -0.11 -1.07 6.28 -24.89 -0.16 -1.23 16 13 C 0.14 1.65 2.98 -66.94 -0.20 1.45 16 14 H 0.08 1.02 8.13 -51.93 -0.42 0.59 16 15 C 0.05 0.68 5.10 -3.83 -0.02 0.66 16 16 N -0.66 -11.05 5.95 -115.06 -0.68 -11.74 16 17 C 0.05 0.89 6.16 -4.97 -0.03 0.86 16 18 C 0.45 10.78 7.82 -10.98 -0.09 10.69 16 19 O -0.56 -15.61 15.78 5.55 0.09 -15.53 16 20 N -0.59 -14.75 5.09 -10.96 -0.06 -14.80 16 21 C -0.30 -8.87 10.16 -14.93 -0.15 -9.02 16 22 H 0.12 3.95 7.39 -52.49 -0.39 3.56 16 23 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 24 N -0.88 -26.38 13.96 55.50 0.77 -25.61 16 25 Si 0.88 20.09 27.74 -169.99 -4.71 15.38 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -5.65 6.52 56.52 0.37 -5.28 16 29 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.40 0.96 8.47 -40.82 -0.35 0.61 16 35 H 0.12 0.40 7.77 -51.93 -0.40 0.00 16 36 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.24 7.51 -51.93 -0.39 -0.15 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.08 0.84 7.78 -51.93 -0.40 0.43 16 43 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 44 H 0.04 0.67 6.90 -51.93 -0.36 0.31 16 45 H 0.35 6.19 8.36 -39.30 -0.33 5.86 16 46 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.37 8.19 5.76 -40.82 -0.24 7.95 16 49 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 402.34 15.07 6.06 6.06 Total: -1.00 -40.20 402.34 -8.73 -48.92 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -7.93 Total: 11.09 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: -0.91 Total: 14.40 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -0.80 Total: -63.48 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.43 Total: -32.38 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.71 Total: 15.38 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -40.20 -8.73 -48.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733338995.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.303 kcal (2) G-P(sol) polarization free energy of solvation -40.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds