Wall clock time and date at job start Sat Apr 11 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46924 * 2 1 4 4 C 1.34781 * 119.99657 * 180.02562 * 3 2 1 5 5 O 1.21271 * 120.00300 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99739 * 180.02562 * 4 3 2 7 7 C 1.50696 * 109.47166 * 180.02562 * 6 4 3 8 8 O 1.21284 * 120.00037 * 359.97438 * 7 6 4 9 9 N 1.34769 * 120.00043 * 180.02562 * 7 6 4 10 10 C 1.47430 * 125.65103 * 354.94955 * 9 7 6 11 11 C 1.54903 * 104.83558 * 204.09685 * 10 9 7 12 12 C 1.55159 * 101.58406 * 322.99307 * 11 10 9 13 13 C 1.47026 * 125.64829 * 174.64831 * 9 7 6 14 14 H 1.09002 * 109.88218 * 59.55417 * 13 9 7 15 15 C 1.53000 * 109.88032 * 298.38903 * 13 9 7 16 16 N 1.46897 * 109.46763 * 175.60328 * 15 13 9 17 17 C 1.46902 * 110.99929 * 184.82440 * 16 15 13 18 18 C 1.50704 * 109.47406 * 179.97438 * 17 16 15 19 19 O 1.21289 * 119.99590 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00161 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99911 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00037 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00042 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00316 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99712 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47102 * 90.00029 * 25 23 21 27 27 H 1.48496 * 109.47278 * 209.99921 * 25 23 21 28 28 H 1.48493 * 109.47361 * 330.00290 * 25 23 21 29 29 H 1.09001 * 109.47172 * 299.99775 * 1 2 3 30 30 H 1.08997 * 109.47503 * 60.00102 * 1 2 3 31 31 H 1.09004 * 109.46806 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46707 * 239.99967 * 2 1 3 33 33 H 1.08997 * 109.47027 * 120.00135 * 2 1 3 34 34 H 0.96996 * 120.00191 * 0.02562 * 3 2 1 35 35 H 1.09006 * 109.46906 * 299.99910 * 6 4 3 36 36 H 1.09001 * 109.47363 * 59.99126 * 6 4 3 37 37 H 1.09000 * 110.36456 * 322.93578 * 10 9 7 38 38 H 1.08996 * 110.36643 * 85.25323 * 10 9 7 39 39 H 1.09002 * 111.00581 * 81.06517 * 11 10 9 40 40 H 1.09000 * 111.00912 * 204.88019 * 11 10 9 41 41 H 1.08993 * 110.72681 * 153.86170 * 12 11 10 42 42 H 1.08999 * 110.71644 * 276.96417 * 12 11 10 43 43 H 1.08999 * 109.47315 * 295.60522 * 15 13 9 44 44 H 1.08996 * 109.47007 * 55.60489 * 15 13 9 45 45 H 1.00893 * 111.00501 * 308.77911 * 16 15 13 46 46 H 1.08994 * 109.47627 * 300.00517 * 17 16 15 47 47 H 1.09003 * 109.47162 * 60.00548 * 17 16 15 48 48 H 0.97000 * 119.99791 * 0.02562 * 20 18 17 49 49 H 0.96996 * 120.00088 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3435 1.6275 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8458 3.0483 0.0001 7 6 5.3527 3.0484 -0.0013 8 8 5.9592 1.9980 -0.0022 9 7 6.0265 4.2155 -0.0006 10 6 5.4226 5.5565 -0.1039 11 6 6.5489 6.4561 -0.6711 12 6 7.8002 5.8718 0.0362 13 6 7.4853 4.3627 0.1097 14 1 7.9736 3.8434 -0.7149 15 6 7.9663 3.7924 1.4455 16 7 9.4331 3.8479 1.5017 17 6 9.9379 3.2041 2.7219 18 6 11.4428 3.2799 2.7442 19 8 12.0364 3.8178 1.8335 20 7 12.1291 2.7500 3.7760 21 6 13.4981 2.8195 3.7965 22 1 14.0267 3.2984 2.9856 23 6 14.2056 2.2727 4.8601 24 7 15.5179 2.3388 4.8795 25 14 13.2913 1.4436 6.2623 26 1 13.1207 0.0003 5.9571 27 1 14.0687 1.5954 7.5184 28 1 11.9577 2.0758 6.4260 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.3880 2.1185 0.0004 35 1 3.4819 3.5627 -0.8895 36 1 3.4828 3.5617 0.8904 37 1 4.5723 5.5380 -0.7856 38 1 5.1136 5.9101 0.8797 39 1 6.6264 6.3496 -1.7531 40 1 6.3935 7.4986 -0.3933 41 1 8.6974 6.0525 -0.5558 42 1 7.9089 6.2913 1.0364 43 1 7.5487 4.3802 2.2630 44 1 7.6380 2.7571 1.5377 45 1 9.8426 3.4332 0.6782 46 1 9.5349 3.7155 3.5959 47 1 9.6269 2.1595 2.7367 48 1 11.6543 2.3195 4.5041 49 1 16.0118 1.9574 5.6222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733338995.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:21 Heat of formation + Delta-G solvation = -129.266968 kcal Electronic energy + Delta-G solvation = -29304.233659 eV Core-core repulsion = 25072.125620 eV Total energy + Delta-G solvation = -4232.108038 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.56065 -40.47603 -40.19172 -38.40951 -36.66858 -36.18777 -35.86309 -33.78733 -33.23897 -32.02992 -31.39559 -30.04157 -28.35328 -26.28439 -24.96951 -24.05476 -23.34597 -22.21210 -21.52421 -21.32805 -20.44229 -19.80207 -18.55512 -17.98360 -17.45528 -17.34516 -17.14459 -16.86156 -16.67398 -16.56558 -16.03268 -15.74631 -15.40645 -15.24915 -15.00531 -14.85547 -14.68255 -14.54583 -14.36593 -14.01444 -13.99002 -13.59278 -13.32134 -13.28316 -13.14822 -13.04508 -12.92283 -12.67926 -12.62348 -12.44412 -12.33667 -12.01865 -12.00505 -11.80281 -11.55663 -11.54810 -11.17010 -10.51206 -10.49588 -10.28299 -10.07473 -9.64133 -9.45425 -8.44153 -6.05023 1.27750 1.32728 1.41492 1.59909 1.69341 1.74378 1.89933 2.20035 2.38084 2.72366 3.11586 3.31514 3.46422 3.71260 3.73297 3.89396 4.00904 4.09498 4.18157 4.20220 4.24476 4.30456 4.36053 4.39293 4.40118 4.44627 4.51299 4.52544 4.69777 4.76431 4.90394 4.96817 5.06510 5.08916 5.10069 5.22065 5.27455 5.37429 5.47102 5.49703 5.50380 5.81847 5.94767 6.20643 6.53727 6.55852 6.63341 6.83805 7.20792 7.35124 7.39363 7.90613 8.73333 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.002126 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.622785 B =13165.844972 C =15003.990931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 N -0.717 5.717 4 C 0.500 3.500 5 O -0.562 6.562 6 C -0.145 4.145 7 C 0.514 3.486 8 O -0.558 6.558 9 N -0.615 5.615 10 C 0.094 3.906 11 C -0.128 4.128 12 C -0.112 4.112 13 C 0.140 3.860 14 H 0.047 0.953 15 C 0.060 3.940 16 N -0.669 5.669 17 C 0.062 3.938 18 C 0.451 3.549 19 O -0.610 6.610 20 N -0.590 5.590 21 C -0.330 4.330 22 H 0.057 0.943 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.963 3.037 26 H -0.260 1.260 27 H -0.270 1.270 28 H -0.233 1.233 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.420 0.580 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.017 0.983 45 H 0.340 0.660 46 H 0.117 0.883 47 H 0.062 0.938 48 H 0.389 0.611 49 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.688 6.924 -7.889 42.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 N -0.372 5.372 4 C 0.286 3.714 5 O -0.439 6.439 6 C -0.186 4.186 7 C 0.302 3.698 8 O -0.435 6.435 9 N -0.350 5.350 10 C -0.027 4.027 11 C -0.165 4.165 12 C -0.151 4.151 13 C 0.035 3.965 14 H 0.066 0.934 15 C -0.070 4.070 16 N -0.301 5.301 17 C -0.071 4.071 18 C 0.239 3.761 19 O -0.494 6.494 20 N -0.232 5.232 21 C -0.459 4.459 22 H 0.075 0.925 23 C -0.212 4.212 24 N -0.572 5.572 25 Si 0.783 3.217 26 H -0.185 1.185 27 H -0.195 1.195 28 H -0.157 1.157 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.258 0.742 35 H 0.181 0.819 36 H 0.180 0.820 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.035 0.965 45 H 0.158 0.842 46 H 0.135 0.865 47 H 0.080 0.920 48 H 0.224 0.776 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -39.270 6.559 -8.142 40.637 hybrid contribution 0.473 -1.582 0.538 1.737 sum -38.796 4.977 -7.604 39.847 Atomic orbital electron populations 1.21936 0.91400 1.04055 1.03630 1.21307 0.96434 0.82847 1.00818 1.45890 1.06171 1.09658 1.75523 1.20710 0.82833 0.91620 0.76258 1.90882 1.56341 1.47719 1.48973 1.21621 0.91163 0.95502 1.10355 1.20525 0.90750 0.82098 0.76419 1.90879 1.70860 1.32285 1.49458 1.48678 1.06607 1.07016 1.72731 1.22723 0.97262 0.79573 1.03102 1.22841 0.92787 1.00473 1.00429 1.22529 0.99213 0.90839 1.02484 1.21390 0.81300 0.98430 0.95339 0.93444 1.22253 0.86899 0.99023 0.98785 1.60130 1.05780 1.60166 1.03998 1.21616 0.90138 0.99174 0.96126 1.20799 0.90479 0.81884 0.82988 1.90532 1.71848 1.48276 1.38773 1.42025 1.06074 1.53536 1.21533 1.19025 0.81468 1.37448 1.07988 0.92456 1.26086 0.96377 0.97771 1.00941 1.69792 1.07728 1.45916 1.33733 0.85388 0.79621 0.79289 0.77392 1.18484 1.19515 1.15662 0.90752 0.90670 0.90359 0.93351 0.93448 0.74207 0.81888 0.82005 0.87128 0.88978 0.90605 0.87293 0.90955 0.90034 0.89500 0.96505 0.84180 0.86517 0.91983 0.77567 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 10.03 71.98 0.72 0.12 16 2 C 0.11 1.32 6.39 86.38 0.55 1.87 16 3 N -0.72 -7.16 5.56 -463.06 -2.57 -9.74 16 4 C 0.50 9.38 7.82 87.66 0.69 10.06 16 5 O -0.56 -18.90 14.18 20.44 0.29 -18.61 16 6 C -0.14 -1.44 5.28 29.10 0.15 -1.28 16 7 C 0.51 11.48 7.56 87.66 0.66 12.14 16 8 O -0.56 -20.32 13.37 20.40 0.27 -20.05 16 9 N -0.61 -10.75 3.06 -788.03 -2.41 -13.16 16 10 C 0.09 0.62 6.65 86.85 0.58 1.20 16 11 C -0.13 -1.12 7.09 31.98 0.23 -0.90 16 12 C -0.11 -1.98 6.28 31.79 0.20 -1.78 16 13 C 0.14 3.24 2.98 45.35 0.14 3.38 16 14 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 15 C 0.06 1.66 5.10 86.30 0.44 2.10 16 16 N -0.67 -22.58 5.95 -517.94 -3.08 -25.66 16 17 C 0.06 2.20 6.16 85.56 0.53 2.73 16 18 C 0.45 21.89 7.82 87.66 0.69 22.58 16 19 O -0.61 -35.46 15.78 -3.06 -0.05 -35.51 16 20 N -0.59 -29.62 5.09 -306.99 -1.56 -31.18 16 21 C -0.33 -20.12 10.16 84.04 0.85 -19.26 16 22 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.93 -57.47 13.96 21.66 0.30 -57.17 16 25 Si 0.96 40.61 27.74 68.60 1.90 42.52 16 26 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.23 -8.42 6.52 99.48 0.65 -7.77 16 29 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.08 0.28 8.14 -2.38 -0.02 0.26 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.42 0.37 8.47 -92.71 -0.79 -0.42 16 35 H 0.16 0.17 7.77 -2.38 -0.02 0.16 16 36 H 0.16 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.11 0.00 7.51 -2.39 -0.02 -0.02 16 38 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.08 1.48 7.78 -2.39 -0.02 1.47 16 43 H 0.09 2.08 8.04 -2.39 -0.02 2.06 16 44 H 0.02 0.55 6.90 -2.39 -0.02 0.54 16 45 H 0.34 12.69 8.36 -89.70 -0.75 11.94 16 46 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 47 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.39 16.43 5.76 -92.71 -0.53 15.90 16 49 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -100.10 402.34 -1.16 -101.27 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: -1.14 Total: 34.61 kcal Atomic # 6 Polarization: 25.79 SS G_CDS: 6.89 Total: 32.68 kcal Atomic # 7 Polarization: -127.58 SS G_CDS: -9.33 Total: -136.90 kcal Atomic # 8 Polarization: -74.68 SS G_CDS: 0.51 Total: -74.17 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 1.90 Total: 42.52 kcal Total: -100.10 -1.16 -101.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733338995.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.001 kcal (2) G-P(sol) polarization free energy of solvation -100.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds