Wall clock time and date at job start Sat Apr 11 2020 06:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48561 * 111.00235 * 2 1 4 4 C 1.54379 * 104.59639 * 200.95844 * 3 2 1 5 5 C 1.54265 * 105.06083 * 23.85157 * 4 3 2 6 6 C 1.48566 * 110.99913 * 244.58037 * 2 1 3 7 7 H 1.09001 * 110.50946 * 40.21746 * 6 2 1 8 8 C 1.50698 * 110.41131 * 277.81898 * 6 2 1 9 9 O 1.21283 * 120.00472 * 344.83190 * 8 6 2 10 10 N 1.34777 * 119.99538 * 164.82528 * 8 6 2 11 11 C 1.46499 * 119.99665 * 179.72653 * 10 8 6 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 O 1.42904 * 112.93726 * 55.33514 * 12 11 10 14 14 C 1.53934 * 113.73038 * 283.76779 * 12 11 10 15 15 N 1.48195 * 86.09979 * 221.95611 * 14 12 11 16 16 C 1.46891 * 111.07142 * 137.52251 * 15 14 12 17 17 C 1.50703 * 109.47421 * 90.56590 * 16 15 14 18 18 O 1.21294 * 119.99756 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00272 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00300 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99502 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00566 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99622 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00348 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47354 * 90.00083 * 24 22 20 26 26 H 1.48508 * 109.47140 * 210.00405 * 24 22 20 27 27 H 1.48502 * 109.47119 * 330.00054 * 24 22 20 28 28 C 1.47958 * 90.79916 * 24.59848 * 15 14 12 29 29 H 1.08998 * 109.47459 * 175.41200 * 1 2 3 30 30 H 1.08995 * 109.47521 * 295.41861 * 1 2 3 31 31 H 1.09007 * 109.46800 * 55.41859 * 1 2 3 32 32 H 1.09001 * 110.40892 * 82.18069 * 3 2 1 33 33 H 1.08990 * 110.51384 * 319.78861 * 3 2 1 34 34 H 1.09005 * 110.32211 * 264.96207 * 4 3 2 35 35 H 1.08991 * 110.32637 * 142.75126 * 4 3 2 36 36 H 1.08995 * 110.32490 * 241.10657 * 5 4 3 37 37 H 1.08998 * 110.32015 * 118.89442 * 5 4 3 38 38 H 0.97001 * 120.00485 * 0.02562 * 10 8 6 39 39 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 40 40 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 41 41 H 0.96702 * 113.99517 * 309.66458 * 13 12 11 42 42 H 1.08998 * 113.76228 * 336.23170 * 14 12 11 43 43 H 1.09000 * 113.75847 * 107.60361 * 14 12 11 44 44 H 1.09004 * 109.46978 * 210.56827 * 16 15 14 45 45 H 1.09001 * 109.47499 * 330.56368 * 16 15 14 46 46 H 0.97004 * 119.99873 * 0.02562 * 19 17 16 47 47 H 0.96995 * 119.99761 * 179.97438 * 23 22 20 48 48 H 1.08994 * 113.76511 * 221.08642 * 28 15 14 49 49 H 1.09002 * 113.75468 * 89.71961 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0540 -1.3585 6 6 2.0013 -0.5954 -1.2527 7 1 1.4104 -0.2729 -2.1100 8 6 2.0103 -2.0993 -1.1575 9 8 1.8827 -2.6395 -0.0791 10 7 2.1600 -2.8441 -2.2707 11 6 2.1747 -4.3060 -2.1774 12 6 2.3634 -4.9043 -3.5729 13 8 3.5303 -4.4137 -4.2361 14 6 1.0933 -4.8626 -4.4417 15 7 1.4584 -6.2358 -4.8628 16 6 0.2772 -7.1081 -4.9012 17 6 -0.3388 -7.0595 -6.2757 18 8 0.1578 -6.3667 -7.1386 19 7 -1.4408 -7.7866 -6.5465 20 6 -2.0014 -7.7420 -7.7967 21 1 -1.5597 -7.1244 -8.5648 22 6 -3.1378 -8.4912 -8.0758 23 7 -3.6756 -9.2422 -7.1410 24 14 -3.9013 -8.4309 -9.7795 25 1 -3.2981 -9.4882 -10.6300 26 1 -5.3655 -8.6557 -9.6741 27 1 -3.6474 -7.1007 -10.3890 28 6 2.2258 -6.4370 -3.6138 29 1 -0.3634 -1.0243 -0.0822 30 1 -0.3634 0.4411 0.9281 31 1 -0.3633 0.5833 -0.8462 32 1 2.0079 1.7916 1.0121 33 1 1.4105 2.0229 -0.6590 34 1 4.1483 1.1747 0.2936 35 1 3.6937 2.0995 -1.1698 36 1 4.1482 -0.7694 -0.9351 37 1 3.6937 0.1554 -2.3984 38 1 2.2623 -2.4121 -3.1332 39 1 2.9957 -4.6208 -1.5331 40 1 1.2303 -4.6529 -1.7581 41 1 3.6055 -3.4496 -4.2379 42 1 0.1690 -4.8110 -3.8663 43 1 1.1359 -4.1292 -5.2470 44 1 0.5737 -8.1316 -4.6719 45 1 -0.4505 -6.7671 -4.1647 46 1 -1.8377 -8.3409 -5.8564 47 1 -4.4691 -9.7649 -7.3357 48 1 3.1716 -6.9590 -3.7587 49 1 1.6334 -6.8467 -2.7957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733501969.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:28 Heat of formation + Delta-G solvation = -97.117642 kcal Electronic energy + Delta-G solvation = -29723.983867 eV Core-core repulsion = 25493.269927 eV Total energy + Delta-G solvation = -4230.713939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82369 -41.03167 -39.79449 -38.88457 -36.91863 -35.90043 -35.33890 -33.30056 -33.17336 -31.76686 -30.57912 -28.42796 -27.29806 -26.78060 -26.55649 -24.21042 -22.98362 -21.89730 -21.30401 -21.07215 -20.87474 -19.89759 -18.85174 -17.85768 -17.73204 -17.24828 -16.92237 -16.73089 -16.56345 -16.46746 -16.14536 -15.69312 -15.57931 -15.24705 -15.20777 -14.88983 -14.74226 -14.43269 -14.26258 -14.09380 -13.63531 -13.55983 -13.43553 -13.33931 -13.02463 -12.97021 -12.94165 -12.58826 -12.42942 -12.38002 -12.32957 -12.13458 -12.05615 -11.84055 -11.55286 -11.50936 -10.96941 -10.83289 -10.39792 -10.21408 -10.01864 -9.64683 -9.49679 -8.47411 -5.96196 1.37003 1.40423 1.53217 1.57623 1.92040 2.05069 2.27494 2.64414 2.92723 3.05114 3.18699 3.23939 3.38658 3.51412 3.59296 3.63357 3.95444 4.00151 4.06214 4.18635 4.23118 4.24542 4.37106 4.39563 4.44047 4.46078 4.53723 4.57107 4.61363 4.65823 4.72315 4.77591 4.87951 4.93863 4.94678 5.01856 5.11369 5.24007 5.27037 5.37654 5.40368 5.73340 5.84593 5.94787 6.05366 6.44968 6.60094 6.70461 7.12440 7.21029 7.55927 8.12529 8.70021 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.001981 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.134101 B =14128.259540 C =14807.176777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.520 5.520 3 C 0.030 3.970 4 C -0.121 4.121 5 C -0.110 4.110 6 C 0.042 3.958 7 H 0.094 0.906 8 C 0.522 3.478 9 O -0.562 6.562 10 N -0.719 5.719 11 C 0.114 3.886 12 C 0.117 3.883 13 O -0.536 6.536 14 C -0.015 4.015 15 N -0.476 5.476 16 C 0.020 3.980 17 C 0.442 3.558 18 O -0.619 6.619 19 N -0.576 5.576 20 C -0.333 4.333 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.019 3.981 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.412 0.588 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.389 0.611 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.084 0.916 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.101 0.899 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.003 19.861 15.775 28.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.245 5.245 3 C -0.097 4.097 4 C -0.159 4.159 5 C -0.149 4.149 6 C -0.070 4.070 7 H 0.112 0.888 8 C 0.309 3.691 9 O -0.439 6.439 10 N -0.374 5.374 11 C -0.011 4.011 12 C 0.074 3.926 13 O -0.343 6.343 14 C -0.144 4.144 15 N -0.199 5.199 16 C -0.111 4.111 17 C 0.229 3.771 18 O -0.505 6.505 19 N -0.214 5.214 20 C -0.462 4.462 21 H 0.095 0.905 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.110 4.110 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.248 0.752 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.239 0.761 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.127 0.873 45 H 0.101 0.899 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.119 0.881 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.625 18.741 15.723 27.529 hybrid contribution -1.782 0.493 -0.771 2.003 sum 10.843 19.233 14.953 26.666 Atomic orbital electron populations 1.22495 0.87190 1.01430 1.02115 1.65048 1.09038 1.16568 1.33824 1.23236 0.95850 0.88346 1.02260 1.22315 0.96024 0.97515 1.00003 1.22300 0.92355 0.97461 1.02742 1.22736 0.99766 0.90388 0.94137 0.88788 1.20780 0.75096 0.89866 0.83377 1.90703 1.49452 1.74416 1.29356 1.45799 1.74792 1.06430 1.10372 1.21826 1.03212 0.80186 0.95908 1.22625 0.85399 0.95256 0.89287 1.86626 1.41554 1.27591 1.78526 1.24778 0.98030 0.93063 0.98564 1.68411 1.15728 1.02431 1.33349 1.22400 0.94047 1.00905 0.93787 1.20795 0.82114 0.82976 0.91204 1.90487 1.64308 1.45439 1.50217 1.41954 1.25065 1.41608 1.12757 1.19637 1.09567 1.26939 0.90073 0.90504 1.26046 0.96740 0.95388 1.03228 1.69672 1.22852 1.28775 1.34867 0.84927 0.77537 0.78654 0.77211 1.19699 1.19439 1.19775 1.24233 1.00488 0.93968 0.92276 0.93104 0.90316 0.93783 0.89579 0.92208 0.91037 0.88658 0.91769 0.87559 0.75162 0.90313 0.90433 0.76079 0.89721 0.90219 0.87315 0.89853 0.77026 0.91312 0.88070 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.44 127.69 1.21 1.46 16 2 N -0.52 -8.75 4.92 -887.03 -4.36 -13.11 16 3 C 0.03 0.33 6.49 86.45 0.56 0.89 16 4 C -0.12 -1.00 7.00 31.49 0.22 -0.78 16 5 C -0.11 -1.05 6.54 31.49 0.21 -0.84 16 6 C 0.04 0.57 2.68 44.32 0.12 0.69 16 7 H 0.09 0.93 7.97 -2.39 -0.02 0.91 16 8 C 0.52 10.09 6.72 87.66 0.59 10.68 16 9 O -0.56 -16.26 16.56 -3.04 -0.05 -16.31 16 10 N -0.72 -10.36 5.33 -463.05 -2.47 -12.82 16 11 C 0.11 1.95 5.25 86.38 0.45 2.40 16 12 C 0.12 2.34 1.48 -10.15 -0.02 2.32 16 13 O -0.54 -11.08 13.50 -148.98 -2.01 -13.09 16 14 C -0.02 -0.40 7.37 86.36 0.64 0.24 16 15 N -0.48 -15.32 5.65 -914.60 -5.17 -20.49 16 16 C 0.02 0.70 5.28 85.56 0.45 1.15 16 17 C 0.44 21.48 7.83 87.66 0.69 22.17 16 18 O -0.62 -35.41 16.01 -3.07 -0.05 -35.46 16 19 N -0.58 -29.98 5.29 -306.99 -1.62 -31.60 16 20 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 21 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 22 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 23 N -0.92 -49.98 13.05 21.66 0.28 -49.70 16 24 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 C 0.02 0.43 7.35 86.41 0.64 1.06 16 29 H 0.05 0.99 7.96 -2.39 -0.02 0.97 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.04 0.53 7.98 -2.38 -0.02 0.51 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.49 7.91 -2.39 -0.02 0.47 16 34 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.06 0.81 7.85 -2.39 -0.02 0.79 16 37 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.41 3.64 7.42 -92.71 -0.69 2.96 16 39 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.08 1.43 8.09 -2.39 -0.02 1.42 16 41 H 0.39 4.57 7.73 -74.06 -0.57 4.00 16 42 H 0.08 2.03 7.40 -2.39 -0.02 2.01 16 43 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.11 3.30 8.08 -2.38 -0.02 3.28 16 45 H 0.08 2.43 7.39 -2.39 -0.02 2.41 16 46 H 0.40 19.46 7.90 -92.70 -0.73 18.72 16 47 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 48 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.11 1.89 7.88 -2.39 -0.02 1.87 16 Total: -1.00 -81.69 401.96 -7.40 -89.09 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: -1.01 Total: 35.40 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 7.03 Total: 22.79 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -13.34 Total: -127.72 kcal Atomic # 8 Polarization: -62.76 SS G_CDS: -2.11 Total: -64.87 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -81.69 -7.40 -89.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733501969.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.030 kcal (2) G-P(sol) polarization free energy of solvation -81.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds