Wall clock time and date at job start Sat Apr 11 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 119.99976 * 2 1 4 4 N 1.34778 * 120.00028 * 180.02562 * 2 1 3 5 5 C 1.46505 * 120.00029 * 179.97438 * 4 2 1 6 6 C 1.50694 * 109.47133 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00124 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00048 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00198 * 179.97438 * 8 6 5 10 10 H 1.09007 * 108.74072 * 36.53909 * 9 8 6 11 11 C 1.54170 * 108.85320 * 278.08829 * 9 8 6 12 12 C 1.53826 * 111.96596 * 197.68134 * 11 9 8 13 13 C 1.50813 * 111.62090 * 319.03778 * 12 11 9 14 14 N 1.47643 * 108.05273 * 95.06216 * 13 12 11 15 15 C 1.46899 * 111.00084 * 150.34561 * 14 13 12 16 16 C 1.50698 * 109.46987 * 298.88720 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47234 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47403 * 120.00325 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00122 * 23 21 19 27 27 C 1.39782 * 114.75444 * 277.19814 * 14 13 12 28 28 C 1.50745 * 108.85663 * 154.99747 * 9 8 6 29 29 H 1.09006 * 109.47093 * 269.99847 * 1 2 3 30 30 H 1.08996 * 109.47116 * 29.99651 * 1 2 3 31 31 H 1.08999 * 109.47149 * 150.00034 * 1 2 3 32 32 H 0.97001 * 120.00108 * 359.97438 * 4 2 1 33 33 H 1.09003 * 109.46744 * 59.99881 * 5 4 2 34 34 H 1.08999 * 109.46973 * 300.00387 * 5 4 2 35 35 H 0.96996 * 119.99820 * 359.97438 * 8 6 5 36 36 H 1.08994 * 108.98172 * 318.31492 * 11 9 8 37 37 H 1.09002 * 108.98569 * 77.04165 * 11 9 8 38 38 H 1.09002 * 109.05273 * 79.59407 * 12 11 9 39 39 H 1.09003 * 109.04868 * 198.49251 * 12 11 9 40 40 H 1.08997 * 109.75357 * 335.42446 * 13 12 11 41 41 H 1.09003 * 109.74844 * 214.69613 * 13 12 11 42 42 H 1.09003 * 109.46477 * 178.89210 * 15 14 13 43 43 H 1.08993 * 109.47002 * 58.89536 * 15 14 13 44 44 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 45 45 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 46 46 H 1.08995 * 109.02130 * 182.86051 * 27 14 13 47 47 H 1.09000 * 109.01947 * 301.76472 * 27 14 13 48 48 H 1.09000 * 109.54966 * 93.95894 * 28 9 8 49 49 H 1.09003 * 109.54430 * 333.69096 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1482 -2.5880 -0.0022 7 8 3.3601 -3.5098 -0.0021 8 7 5.4733 -2.8343 -0.0024 9 6 5.9617 -4.2155 -0.0029 10 1 5.2965 -4.8219 -0.6177 11 6 5.9343 -4.7541 1.4413 12 6 6.8156 -6.0041 1.6060 13 6 6.6815 -6.9376 0.4291 14 7 7.7750 -6.6405 -0.5174 15 6 8.1610 -7.8418 -1.2697 16 6 8.6535 -8.8969 -0.3130 17 8 8.6799 -8.6706 0.8783 18 7 9.0637 -10.0923 -0.7812 19 6 9.5171 -11.0503 0.0885 20 1 9.5413 -10.8485 1.1493 21 6 9.9453 -12.2806 -0.3946 22 7 9.9163 -12.5259 -1.6854 23 14 10.5624 -13.5860 0.7905 24 1 10.4940 -13.0655 2.1796 25 1 9.7149 -14.7999 0.6750 26 1 11.9683 -13.9306 0.4591 27 6 7.5282 -5.5677 -1.3788 28 6 7.3430 -4.2436 -0.6060 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6959 -2.0073 -0.0005 33 1 4.0096 -0.6535 0.8889 34 1 4.0089 -0.6531 -0.8911 35 1 6.1036 -2.0970 -0.0021 36 1 6.2920 -3.9768 2.1165 37 1 4.9076 -5.0068 1.7062 38 1 7.8569 -5.6957 1.6987 39 1 6.5198 -6.5309 2.5133 40 1 5.7195 -6.7798 -0.0585 41 1 6.7583 -7.9708 0.7679 42 1 8.9546 -7.5903 -1.9733 43 1 7.2976 -8.2212 -1.8162 44 1 9.0422 -10.2734 -1.7340 45 1 10.2149 -13.3849 -2.0226 46 1 8.3678 -5.4635 -2.0660 47 1 6.6238 -5.7728 -1.9516 48 1 8.0884 -4.1766 0.1865 49 1 7.4595 -3.4029 -1.2899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733754735.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:36 Heat of formation + Delta-G solvation = -101.393914 kcal Electronic energy + Delta-G solvation = -29534.705301 eV Core-core repulsion = 25303.805929 eV Total energy + Delta-G solvation = -4230.899372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.73779 -39.85354 -39.12623 -37.71973 -35.63743 -34.78304 -33.88053 -33.08535 -31.63914 -31.22263 -30.73557 -28.29474 -27.13459 -25.53990 -24.64763 -23.73596 -21.33316 -21.03273 -20.66926 -19.64156 -19.15291 -18.06701 -17.86137 -17.12397 -16.45043 -16.37770 -16.21391 -15.89482 -15.60654 -15.26398 -15.00062 -14.62810 -14.45958 -14.11975 -13.90207 -13.78352 -13.56389 -13.46555 -13.34189 -13.05976 -12.98767 -12.47652 -12.26675 -12.18208 -12.07446 -11.79933 -11.49913 -11.37482 -11.20805 -11.05675 -10.71735 -10.49263 -10.41749 -10.34608 -10.28669 -10.22531 -10.18039 -9.65668 -9.47048 -9.32308 -8.37098 -7.95729 -7.78950 -6.41846 -3.82449 2.13484 2.22424 2.41536 3.06746 3.16004 3.26715 3.33656 3.90701 4.01689 4.18060 4.23810 4.42473 4.65355 4.73383 4.78237 4.82648 4.90444 4.92892 4.97064 5.06458 5.23547 5.24303 5.27137 5.38119 5.41712 5.43301 5.63931 5.75099 5.78854 5.82270 5.85292 5.88089 5.98683 6.02468 6.16056 6.21541 6.27139 6.31096 6.60021 6.67764 7.03138 7.08210 7.35727 7.55262 7.73615 7.74008 7.77444 8.07159 8.61851 9.18309 9.54990 10.06408 10.75981 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033805 B = 0.001705 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.081043 B =16415.486190 C =16529.996474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.513 3.487 3 O -0.550 6.550 4 N -0.719 5.719 5 C 0.097 3.903 6 C 0.507 3.493 7 O -0.536 6.536 8 N -0.721 5.721 9 C 0.146 3.854 10 H 0.084 0.916 11 C -0.127 4.127 12 C -0.104 4.104 13 C 0.067 3.933 14 N -0.537 5.537 15 C 0.051 3.949 16 C 0.443 3.557 17 O -0.575 6.575 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.082 3.918 28 C -0.125 4.125 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.413 0.587 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.402 0.598 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.047 0.953 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.074 0.926 47 H 0.016 0.984 48 H 0.086 0.914 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.171 21.990 -0.657 25.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.300 3.700 3 O -0.428 6.428 4 N -0.376 5.376 5 C -0.030 4.030 6 C 0.293 3.707 7 O -0.413 6.413 8 N -0.372 5.372 9 C 0.042 3.958 10 H 0.102 0.898 11 C -0.165 4.165 12 C -0.143 4.143 13 C -0.059 4.059 14 N -0.261 5.261 15 C -0.080 4.080 16 C 0.228 3.772 17 O -0.459 6.459 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.049 4.049 28 C -0.164 4.164 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.252 0.748 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.237 0.763 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.034 0.966 48 H 0.105 0.895 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.875 22.185 0.306 25.652 hybrid contribution -0.164 -1.107 -0.630 1.284 sum -13.038 21.078 -0.324 24.787 Atomic orbital electron populations 1.21868 0.91034 1.05137 1.05063 1.20863 0.90846 0.82973 0.75274 1.90734 1.70837 1.31426 1.49815 1.45848 1.05964 1.10077 1.75684 1.21076 0.82608 0.94456 1.04877 1.20505 0.83134 0.90915 0.76187 1.90719 1.55125 1.45883 1.49562 1.46241 1.06504 1.09686 1.74770 1.21078 0.95856 0.81129 0.97709 0.89800 1.22342 1.00895 0.98300 0.94998 1.21241 1.00637 0.94188 0.98205 1.21906 0.89592 1.01989 0.92443 1.58331 1.41910 1.04942 1.20901 1.21797 1.00031 0.90660 0.95480 1.19756 0.84640 0.83461 0.89329 1.90503 1.59174 1.79989 1.16274 1.41892 1.56485 1.11758 1.10055 1.19745 1.38451 0.92459 0.92072 0.87852 1.25254 0.97735 0.98515 0.96470 1.69621 1.47931 1.24664 1.12123 0.85812 0.78201 0.80083 0.80309 1.19242 1.20820 1.20782 1.20831 0.99717 0.90452 0.93854 1.21795 0.96051 0.97799 1.00740 0.88604 0.88657 0.89900 0.74844 0.88335 0.88350 0.76341 0.92177 0.91975 0.90243 0.91785 0.95441 0.88401 0.89484 0.93530 0.77530 0.91961 0.90789 0.96585 0.89536 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 10.30 36.01 0.37 -0.39 16 2 C 0.51 4.26 7.94 -10.99 -0.09 4.17 16 3 O -0.55 -6.75 17.10 5.56 0.10 -6.65 16 4 N -0.72 -5.44 5.53 -61.47 -0.34 -5.78 16 5 C 0.10 0.69 6.15 -5.19 -0.03 0.66 16 6 C 0.51 4.56 7.81 -10.99 -0.09 4.47 16 7 O -0.54 -6.71 15.34 5.56 0.09 -6.63 16 8 N -0.72 -5.54 4.95 -54.31 -0.27 -5.80 16 9 C 0.15 1.49 1.94 -68.45 -0.13 1.35 16 10 H 0.08 1.05 6.02 -51.93 -0.31 0.74 16 11 C -0.13 -1.45 5.43 -25.69 -0.14 -1.59 16 12 C -0.10 -1.47 5.41 -27.40 -0.15 -1.62 16 13 C 0.07 1.07 4.62 -4.51 -0.02 1.05 16 14 N -0.54 -8.36 3.76 -241.45 -0.91 -9.27 16 15 C 0.05 0.88 5.45 -4.98 -0.03 0.85 16 16 C 0.44 10.09 7.20 -10.99 -0.08 10.01 16 17 O -0.58 -14.80 13.87 5.55 0.08 -14.72 16 18 N -0.57 -14.02 5.29 -10.96 -0.06 -14.08 16 19 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 23 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.08 0.98 4.93 -6.74 -0.03 0.95 16 28 C -0.13 -1.20 5.20 -27.11 -0.14 -1.34 16 29 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.41 2.92 7.44 -40.82 -0.30 2.62 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.40 1.92 8.49 -40.82 -0.35 1.58 16 36 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.21 7.26 -51.93 -0.38 0.83 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.41 6.66 -51.93 -0.35 0.07 16 41 H 0.10 1.91 5.61 -51.93 -0.29 1.62 16 42 H 0.09 1.35 7.83 -51.93 -0.41 0.94 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.07 0.82 7.80 -51.93 -0.40 0.41 16 47 H 0.02 0.20 7.54 -51.93 -0.39 -0.19 16 48 H 0.09 0.89 7.11 -51.93 -0.37 0.52 16 49 H 0.07 0.54 7.88 -51.93 -0.41 0.13 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -34.33 393.58 -8.08 -42.40 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -7.60 Total: 11.60 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -0.80 Total: 10.75 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.85 Total: -58.54 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: 0.26 Total: -28.01 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.33 -8.08 -42.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733754735.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.990 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds