Wall clock time and date at job start Sat Apr 11 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21278 * 119.99300 * 2 1 4 4 N 1.34776 * 120.00115 * 179.97438 * 2 1 3 5 5 C 1.46498 * 119.99659 * 180.02562 * 4 2 1 6 6 C 1.50702 * 109.47064 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99774 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00173 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00065 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.56978 * 325.00205 * 9 8 6 11 11 C 1.50463 * 109.67390 * 85.31221 * 9 8 6 12 12 C 1.54293 * 113.03516 * 212.02371 * 11 9 8 13 13 C 1.54066 * 112.28923 * 318.30143 * 12 11 9 14 14 N 1.44270 * 111.97657 * 318.91516 * 13 12 11 15 15 C 1.46897 * 111.00461 * 219.31308 * 14 13 12 16 16 C 1.50706 * 109.47000 * 301.97616 * 15 14 13 17 17 O 1.21297 * 119.99775 * 4.74378 * 16 15 14 18 18 N 1.34769 * 119.99907 * 184.75433 * 16 15 14 19 19 C 1.37103 * 119.99715 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00209 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99734 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00127 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99719 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47214 * 59.99511 * 23 21 19 25 25 H 1.48504 * 109.46759 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46908 * 299.99360 * 23 21 19 27 27 C 1.47799 * 109.45616 * 96.44037 * 14 13 12 28 28 C 1.45859 * 112.92704 * 276.72876 * 27 14 13 29 29 H 1.09004 * 109.46676 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47493 * 300.00042 * 1 2 3 31 31 H 1.09007 * 109.47075 * 60.00663 * 1 2 3 32 32 H 0.96993 * 119.99903 * 0.02562 * 4 2 1 33 33 H 1.08998 * 109.46912 * 60.00583 * 5 4 2 34 34 H 1.09003 * 109.47442 * 300.00320 * 5 4 2 35 35 H 0.96999 * 119.99957 * 359.97438 * 8 6 5 36 36 H 1.08997 * 108.77398 * 332.94629 * 11 9 8 37 37 H 1.09000 * 108.77391 * 91.11027 * 11 9 8 38 38 H 1.09004 * 108.91895 * 197.57799 * 12 11 9 39 39 H 1.09002 * 108.91807 * 79.02794 * 12 11 9 40 40 H 1.09001 * 108.98004 * 198.27446 * 13 12 11 41 41 H 1.08996 * 108.97724 * 79.56046 * 13 12 11 42 42 H 1.09002 * 109.47046 * 61.96693 * 15 14 13 43 43 H 1.08995 * 109.47709 * 181.97127 * 15 14 13 44 44 H 0.97000 * 120.00543 * 359.97438 * 18 16 15 45 45 H 0.96995 * 119.99904 * 180.02562 * 22 21 19 46 46 H 1.09002 * 108.79146 * 155.83755 * 27 14 13 47 47 H 1.08996 * 108.70042 * 37.55782 * 27 14 13 48 48 H 1.09005 * 109.05869 * 300.77828 * 28 27 14 49 49 H 1.09000 * 109.00219 * 181.82970 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1483 -2.5879 0.0010 7 8 3.3602 -3.5098 0.0000 8 7 5.4734 -2.8341 0.0019 9 6 5.9618 -4.2153 0.0013 10 1 5.2898 -4.8404 0.5892 11 6 6.0228 -4.7303 -1.4112 12 6 5.7485 -6.2452 -1.5138 13 6 6.4435 -7.0421 -0.3933 14 7 7.7785 -6.5595 -0.1358 15 6 8.7001 -7.6735 0.1240 16 6 8.1996 -8.4764 1.2971 17 8 7.1329 -8.2050 1.8068 18 7 8.9372 -9.4957 1.7799 19 6 8.4821 -10.2258 2.8474 20 1 7.5327 -9.9838 3.3016 21 6 9.2424 -11.2771 3.3448 22 7 10.3974 -11.5719 2.7917 23 14 8.6226 -12.2713 4.7997 24 1 7.3236 -12.9012 4.4515 25 1 9.6109 -13.3281 5.1340 26 1 8.4404 -11.3753 5.9699 27 6 7.7506 -5.6184 1.0035 28 6 7.3803 -4.2630 0.6119 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6960 -2.0072 0.0005 33 1 4.0088 -0.6531 0.8911 34 1 4.0096 -0.6533 -0.8888 35 1 6.1037 -2.0968 0.0024 36 1 5.2838 -4.1987 -2.0106 37 1 7.0134 -4.5251 -1.8169 38 1 6.1074 -6.6049 -2.4781 39 1 4.6734 -6.4146 -1.4533 40 1 6.4958 -8.0912 -0.6844 41 1 5.8539 -6.9581 0.5196 42 1 8.7547 -8.3130 -0.7570 43 1 9.6913 -7.2801 0.3494 44 1 9.7902 -9.7129 1.3721 45 1 10.9280 -12.3060 3.1388 46 1 8.7388 -5.5936 1.4628 47 1 7.0316 -5.9805 1.7383 48 1 8.0968 -3.8966 -0.1232 49 1 7.4113 -3.6188 1.4906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733754737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:38 Heat of formation + Delta-G solvation = -134.476611 kcal Electronic energy + Delta-G solvation = -29871.374590 eV Core-core repulsion = 25639.040645 eV Total energy + Delta-G solvation = -4232.333946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55986 -40.95250 -40.21204 -38.98567 -36.62699 -35.74515 -35.46654 -33.77521 -33.32140 -33.08245 -31.33170 -29.47735 -28.04609 -26.91114 -25.50185 -25.26844 -22.12664 -21.72002 -21.59192 -21.22451 -20.58428 -19.76957 -18.72632 -17.90080 -17.76510 -17.14817 -17.06448 -16.94093 -16.66685 -16.51943 -16.07832 -15.89297 -15.72487 -15.56419 -15.33857 -14.87377 -14.71596 -14.23918 -14.14699 -14.02750 -13.82362 -13.62726 -13.45821 -13.31624 -13.05312 -12.92280 -12.76034 -12.70087 -12.47083 -12.32543 -12.15168 -11.90899 -11.81521 -11.63504 -11.38391 -11.28083 -11.12001 -11.00261 -10.86441 -10.30966 -10.10253 -10.02277 -9.15006 -8.48112 -5.97668 1.35557 1.38377 1.46156 1.48711 1.59298 1.78614 2.02004 2.26887 2.47183 2.95551 3.18352 3.25345 3.57219 3.63663 3.94743 3.98801 4.08534 4.21921 4.30263 4.34138 4.35953 4.38149 4.44321 4.47642 4.51331 4.54063 4.66915 4.67493 4.76621 4.91867 4.94228 5.04142 5.05569 5.14913 5.21170 5.25826 5.27476 5.36466 5.40193 5.41339 5.51995 5.90195 6.04104 6.13741 6.44753 6.47216 6.57418 7.10099 7.13385 7.15404 7.54103 8.09157 8.67233 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.001944 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.957652 B =14396.985579 C =15058.518883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.510 3.490 3 O -0.595 6.595 4 N -0.718 5.718 5 C 0.101 3.899 6 C 0.509 3.491 7 O -0.574 6.574 8 N -0.704 5.704 9 C 0.152 3.848 10 H 0.052 0.948 11 C -0.106 4.106 12 C -0.099 4.099 13 C 0.065 3.935 14 N -0.486 5.486 15 C 0.049 3.951 16 C 0.406 3.594 17 O -0.627 6.627 18 N -0.570 5.570 19 C -0.334 4.334 20 H 0.075 0.925 21 C -0.011 4.011 22 N -0.917 5.917 23 Si 0.989 3.011 24 H -0.274 1.274 25 H -0.269 1.269 26 H -0.273 1.273 27 C 0.051 3.949 28 C -0.105 4.105 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.416 0.584 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.420 0.580 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.040 0.960 41 H 0.026 0.974 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.070 0.930 47 H 0.022 0.978 48 H 0.099 0.901 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.927 20.551 -9.688 24.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.299 3.701 3 O -0.476 6.476 4 N -0.373 5.373 5 C -0.026 4.026 6 C 0.295 3.705 7 O -0.454 6.454 8 N -0.356 5.356 9 C 0.047 3.953 10 H 0.070 0.930 11 C -0.144 4.144 12 C -0.138 4.138 13 C -0.064 4.064 14 N -0.208 5.208 15 C -0.082 4.082 16 C 0.193 3.807 17 O -0.514 6.514 18 N -0.207 5.207 19 C -0.464 4.464 20 H 0.093 0.907 21 C -0.211 4.211 22 N -0.557 5.557 23 Si 0.813 3.187 24 H -0.200 1.200 25 H -0.194 1.194 26 H -0.198 1.198 27 C -0.077 4.077 28 C -0.143 4.143 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.255 0.745 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.258 0.742 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.128 0.872 43 H 0.133 0.867 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.041 0.959 48 H 0.117 0.883 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.417 20.909 -9.742 24.916 hybrid contribution 0.025 -1.769 1.502 2.321 sum -9.392 19.140 -8.241 22.857 Atomic orbital electron populations 1.21881 0.88137 1.06115 1.06290 1.21513 0.92264 0.82245 0.74081 1.90708 1.71918 1.32753 1.52220 1.45983 1.06293 1.10157 1.74866 1.21118 0.82574 0.92887 1.06006 1.20820 0.83018 0.91293 0.75358 1.90722 1.56150 1.47204 1.51316 1.45860 1.06530 1.09260 1.73952 1.20622 0.95437 0.81955 0.97268 0.93018 1.21492 1.02774 0.94668 0.95512 1.21847 0.98543 0.95076 0.98361 1.21762 0.89769 0.97151 0.97713 1.62217 1.07953 1.13348 1.37291 1.22347 0.98072 0.92479 0.95337 1.22183 0.86227 0.83648 0.88666 1.90504 1.25123 1.71561 1.64259 1.42082 1.20806 1.28457 1.29312 1.19579 1.05417 1.12040 1.09374 0.90673 1.25993 0.95588 0.98128 1.01395 1.69653 1.12600 1.30809 1.42665 0.85049 0.78007 0.77787 0.77854 1.19975 1.19357 1.19834 1.20963 1.01351 0.93467 0.91966 1.20765 0.94943 0.96082 1.02514 0.88458 0.87690 0.87516 0.74536 0.87323 0.86914 0.74244 0.92578 0.89757 0.90731 0.93275 0.94127 0.95525 0.87221 0.86732 0.76950 0.91268 0.91172 0.95948 0.88274 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.39 71.24 0.74 -0.65 16 2 C 0.51 8.57 7.94 87.66 0.70 9.27 16 3 O -0.59 -14.84 17.10 -3.02 -0.05 -14.89 16 4 N -0.72 -11.21 5.53 -466.79 -2.58 -13.79 16 5 C 0.10 1.46 6.15 85.63 0.53 1.99 16 6 C 0.51 9.69 7.71 87.66 0.68 10.36 16 7 O -0.57 -15.79 15.33 -3.05 -0.05 -15.84 16 8 N -0.70 -11.08 4.99 -444.00 -2.22 -13.30 16 9 C 0.15 3.34 2.12 44.68 0.09 3.43 16 10 H 0.05 1.59 6.59 -2.39 -0.02 1.58 16 11 C -0.11 -2.28 5.13 30.21 0.15 -2.13 16 12 C -0.10 -2.60 6.14 31.39 0.19 -2.41 16 13 C 0.07 2.17 3.75 87.15 0.33 2.50 16 14 N -0.49 -14.50 4.45 -916.43 -4.08 -18.58 16 15 C 0.05 1.60 5.54 85.56 0.47 2.08 16 16 C 0.41 18.41 7.03 87.66 0.62 19.02 16 17 O -0.63 -32.85 11.98 -3.08 -0.04 -32.89 16 18 N -0.57 -28.51 5.29 -306.98 -1.62 -30.13 16 19 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 20 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16 21 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 22 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 23 Si 0.99 42.85 29.55 68.60 2.03 44.88 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 27 C 0.05 1.47 4.20 83.94 0.35 1.82 16 28 C -0.10 -2.09 5.02 28.92 0.15 -1.95 16 29 H 0.10 0.46 7.91 -2.38 -0.02 0.44 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.42 6.27 7.27 -92.71 -0.67 5.59 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.42 3.55 8.61 -92.71 -0.80 2.75 16 36 H 0.06 1.19 7.81 -2.39 -0.02 1.18 16 37 H 0.08 1.59 7.38 -2.39 -0.02 1.57 16 38 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.04 1.48 7.32 -2.39 -0.02 1.46 16 41 H 0.03 1.08 5.46 -2.39 -0.01 1.07 16 42 H 0.11 3.20 8.10 -2.39 -0.02 3.18 16 43 H 0.11 3.17 7.95 -2.39 -0.02 3.15 16 44 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 45 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 46 H 0.07 1.98 7.68 -2.39 -0.02 1.96 16 47 H 0.02 0.85 5.90 -2.39 -0.01 0.83 16 48 H 0.10 1.54 7.59 -2.38 -0.02 1.52 16 49 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -76.37 390.84 -3.25 -79.62 By element: Atomic # 1 Polarization: 39.46 SS G_CDS: -1.20 Total: 38.26 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 6.28 Total: 25.27 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -10.22 Total: -124.42 kcal Atomic # 8 Polarization: -63.48 SS G_CDS: -0.14 Total: -63.62 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -76.37 -3.25 -79.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733754737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.853 kcal (2) G-P(sol) polarization free energy of solvation -76.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds