Wall clock time and date at job start Sat Apr 11 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39708 * 119.99513 * 201.02005 * 3 2 1 5 5 C 1.37601 * 120.00287 * 179.97438 * 4 3 2 6 6 C 1.39747 * 119.99658 * 359.97438 * 5 4 3 7 7 C 1.47684 * 120.00231 * 179.97438 * 6 5 4 8 8 O 1.21565 * 120.00338 * 325.27665 * 7 6 5 9 9 N 1.34778 * 119.99549 * 144.99381 * 7 6 5 10 10 C 1.46931 * 120.63080 * 174.27705 * 9 7 6 11 11 C 1.53620 * 108.54171 * 126.37014 * 10 9 7 12 12 C 1.53044 * 109.24094 * 54.86086 * 11 10 9 13 13 C 1.52997 * 109.45920 * 178.48950 * 12 11 10 14 14 N 1.46505 * 109.47187 * 295.06612 * 13 12 11 15 15 C 1.36937 * 120.00267 * 90.00078 * 14 13 12 16 16 H 1.08003 * 119.99700 * 9.33870 * 15 14 13 17 17 C 1.38811 * 120.00406 * 189.33911 * 15 14 13 18 18 N 1.31619 * 119.99605 * 28.92146 * 17 15 14 19 19 Si 1.86801 * 120.00035 * 208.92120 * 17 15 14 20 20 H 1.48497 * 109.47142 * 94.99189 * 19 17 15 21 21 H 1.48493 * 109.46828 * 214.99312 * 19 17 15 22 22 H 1.48504 * 109.47035 * 334.99111 * 19 17 15 23 23 C 1.46500 * 119.99865 * 270.00072 * 14 13 12 24 24 C 1.53002 * 109.47068 * 84.62624 * 23 14 13 25 25 C 1.53042 * 109.53681 * 298.50795 * 12 11 10 26 26 C 1.46928 * 120.63319 * 354.56580 * 9 7 6 27 27 C 1.39741 * 119.98791 * 0.25244 * 6 5 4 28 28 C 1.37600 * 120.00092 * 359.50702 * 27 6 5 29 29 H 4.51942 * 14.06562 * 0.02562 * 4 2 1 30 30 H 1.08004 * 119.99923 * 359.97438 * 4 3 2 31 31 H 1.08005 * 120.00342 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.58712 * 246.21077 * 10 9 7 33 33 H 1.09000 * 109.58457 * 6.63133 * 10 9 7 34 34 H 1.08991 * 109.63674 * 294.86538 * 11 10 9 35 35 H 1.09001 * 109.45701 * 174.73815 * 11 10 9 36 36 H 1.09000 * 109.44983 * 58.52291 * 12 11 10 37 37 H 1.09002 * 109.47567 * 55.06714 * 13 12 11 38 38 H 1.09001 * 109.47445 * 175.07101 * 13 12 11 39 39 H 0.96998 * 119.99752 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.47248 * 204.61934 * 23 14 13 41 41 H 1.08989 * 109.47334 * 324.62491 * 23 14 13 42 42 H 1.09006 * 109.47098 * 59.99653 * 24 23 14 43 43 H 1.08998 * 109.47194 * 180.02562 * 24 23 14 44 44 H 1.08998 * 109.47117 * 300.00111 * 24 23 14 45 45 H 1.08995 * 109.49658 * 301.41517 * 25 12 11 46 46 H 1.08999 * 109.52489 * 181.33588 * 25 12 11 47 47 H 1.09002 * 109.58530 * 353.36684 * 26 9 7 48 48 H 1.08996 * 109.58945 * 113.65211 * 26 9 7 49 49 H 1.08006 * 119.99866 * 179.75113 * 27 6 5 50 50 H 1.08002 * 119.99765 * 180.23071 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3039 1.1304 0.4340 5 6 4.6799 1.1310 0.4346 6 6 5.3793 0.0013 0.0015 7 6 6.8561 0.0020 0.0015 8 8 7.4635 1.0248 -0.2488 9 7 7.5304 -1.1301 0.2846 10 6 8.9942 -1.1789 0.1671 11 6 9.5747 -1.6814 1.4976 12 6 8.9284 -3.0216 1.8557 13 6 9.5303 -3.5451 3.1612 14 7 10.9513 -3.8398 2.9602 15 6 11.8903 -2.8687 3.1842 16 1 11.6037 -1.9377 3.6506 17 6 13.2106 -3.0807 2.8118 18 7 13.4892 -3.8702 1.7961 19 14 14.5920 -2.2456 3.7520 20 1 15.1091 -3.1678 4.7947 21 1 15.6880 -1.8949 2.8135 22 1 14.0767 -1.0102 4.3951 23 6 11.3675 -5.1735 2.5196 24 6 11.2765 -5.2584 0.9947 25 6 7.4198 -2.8320 2.0299 26 6 6.8153 -2.3408 0.7107 27 6 4.6809 -1.1269 -0.4370 28 6 3.3049 -1.1290 -0.4328 29 1 -1.0500 -0.0010 0.0001 30 1 2.7634 2.0034 0.7691 31 1 5.2195 2.0045 0.7697 32 1 9.2738 -1.8595 -0.6371 33 1 9.3770 -0.1809 -0.0465 34 1 9.3682 -0.9561 2.2845 35 1 10.6522 -1.8125 1.3973 36 1 9.1143 -3.7393 1.0566 37 1 9.4225 -2.7898 3.9397 38 1 9.0099 -4.4543 3.4625 39 1 14.4118 -4.0186 1.5361 40 1 12.3957 -5.3552 2.8328 41 1 10.7141 -5.9237 2.9649 42 1 11.9300 -4.5081 0.5494 43 1 11.5858 -6.2508 0.6669 44 1 10.2484 -5.0766 0.6814 45 1 7.2335 -2.0958 2.8118 46 1 6.9629 -3.7817 2.3081 47 1 5.7600 -2.1098 0.8559 48 1 6.9187 -3.1135 -0.0511 49 1 5.2212 -1.9987 -0.7756 50 1 2.7653 -2.0023 -0.7682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733919483.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:41 Heat of formation + Delta-G solvation = 79.188274 kcal Electronic energy + Delta-G solvation = -29593.368338 eV Core-core repulsion = 25781.148860 eV Total energy + Delta-G solvation = -3812.219478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.68897 -38.91144 -37.60432 -35.85254 -34.26674 -33.08447 -31.63925 -31.11452 -30.89028 -30.13289 -29.16435 -26.81839 -24.91997 -23.71599 -23.43719 -22.52688 -22.13960 -20.63097 -19.96339 -19.36745 -19.10114 -17.41342 -16.62894 -16.40638 -16.01644 -15.46987 -14.98080 -14.80773 -14.73684 -14.16512 -13.99019 -13.82935 -13.72472 -13.52519 -13.45980 -13.20514 -12.82205 -12.69582 -12.46165 -12.20818 -11.81826 -11.72241 -11.56115 -11.40252 -11.31093 -10.97207 -10.95870 -10.82661 -10.76523 -10.61345 -10.30004 -10.18372 -9.99354 -9.84781 -9.60809 -9.53293 -9.31229 -9.17285 -8.87004 -8.46600 -8.30386 -6.85983 -5.76709 -3.02930 0.28656 1.01373 2.32454 2.33396 2.92185 3.11726 3.41659 3.50854 3.51599 3.65386 3.83065 4.36544 4.52029 4.53717 4.57611 4.88528 5.00602 5.09463 5.16208 5.19403 5.26374 5.32557 5.47067 5.51917 5.56068 5.63419 5.66253 5.78575 5.90171 5.94067 6.00414 6.04094 6.04864 6.16320 6.22345 6.30871 6.43800 6.49593 6.56689 6.60130 6.66424 6.76067 6.87938 6.97912 7.10812 7.15053 7.21960 7.25750 7.47859 7.66238 7.77218 8.14548 8.17430 8.37041 9.26813 9.90715 10.36656 11.27088 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.002429 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.578755 B =11524.369648 C =12098.435264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.152 4.152 3 C 0.025 3.975 4 C -0.102 4.102 5 C -0.064 4.064 6 C -0.114 4.114 7 C 0.554 3.446 8 O -0.540 6.540 9 N -0.598 5.598 10 C 0.111 3.889 11 C -0.118 4.118 12 C -0.110 4.110 13 C 0.157 3.843 14 N -0.596 5.596 15 C -0.245 4.245 16 H 0.072 0.928 17 C 0.000 4.000 18 N -0.890 5.890 19 Si 0.885 3.115 20 H -0.291 1.291 21 H -0.295 1.295 22 H -0.281 1.281 23 C 0.171 3.829 24 C -0.155 4.155 25 C -0.131 4.131 26 C 0.093 3.907 27 C -0.091 4.091 28 C -0.103 4.103 29 H 0.225 0.775 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.251 0.749 40 H 0.075 0.925 41 H 0.002 0.998 42 H 0.097 0.903 43 H 0.015 0.985 44 H 0.014 0.986 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.069 0.931 49 H 0.142 0.858 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.762 2.918 -4.142 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.152 4.152 3 C 0.025 3.975 4 C -0.120 4.120 5 C -0.083 4.083 6 C -0.117 4.117 7 C 0.342 3.658 8 O -0.418 6.418 9 N -0.330 5.330 10 C -0.011 4.011 11 C -0.156 4.156 12 C -0.132 4.132 13 C 0.030 3.970 14 N -0.317 5.317 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.198 4.198 18 N -0.535 5.535 19 Si 0.716 3.284 20 H -0.218 1.218 21 H -0.222 1.222 22 H -0.207 1.207 23 C 0.046 3.954 24 C -0.214 4.214 25 C -0.169 4.169 26 C -0.029 4.029 27 C -0.109 4.109 28 C -0.121 4.121 29 H 0.242 0.758 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.126 0.874 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.021 0.979 42 H 0.116 0.884 43 H 0.034 0.966 44 H 0.033 0.967 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.108 0.892 48 H 0.087 0.913 49 H 0.159 0.841 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.217 3.404 -4.314 22.886 hybrid contribution 0.533 0.296 0.336 0.696 sum -21.684 3.700 -3.979 22.354 Atomic orbital electron populations 1.24926 0.95784 0.99112 0.98943 1.20031 0.92014 1.01505 1.01612 1.16142 0.86661 0.94766 0.99934 1.21151 0.93705 0.97599 0.99537 1.21153 0.93443 0.97266 0.96414 1.20132 0.93556 0.95362 1.02659 1.18274 0.86800 0.83351 0.77406 1.90781 1.69622 1.31623 1.49764 1.48108 1.08316 1.11026 1.65519 1.21921 0.77265 1.02631 0.99245 1.21988 1.03249 0.95907 0.94485 1.21989 0.91730 0.97630 1.01812 1.20803 0.85413 0.97050 0.93748 1.44228 1.00123 1.09141 1.78196 1.19181 0.87918 0.97805 1.32430 0.90975 1.24651 0.97687 0.99891 0.97557 1.70152 1.17769 1.41829 1.23745 0.86505 0.82798 0.78882 0.80237 1.21846 1.22198 1.20684 1.20628 0.98790 0.83522 0.92506 1.22483 0.98748 1.00262 0.99911 1.22002 0.97860 1.00892 0.96183 1.22278 0.96792 0.86571 0.97265 1.21487 0.93994 0.97465 0.97959 1.21130 0.93684 0.97650 0.99645 0.75819 0.84939 0.84385 0.91559 0.89471 0.92965 0.87365 0.91084 0.93969 0.94591 0.93900 0.90629 0.97948 0.88413 0.96598 0.96747 0.91954 0.91215 0.89169 0.91294 0.84079 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 19.25 29.55 0.57 -0.60 16 2 C -0.15 -1.37 13.23 -38.84 -0.51 -1.88 16 3 C 0.03 0.24 5.73 -106.87 -0.61 -0.37 16 4 C -0.10 -0.96 9.73 -39.27 -0.38 -1.34 16 5 C -0.06 -0.70 9.59 -39.25 -0.38 -1.08 16 6 C -0.11 -1.37 5.31 -104.91 -0.56 -1.92 16 7 C 0.55 8.33 7.38 -12.40 -0.09 8.24 16 8 O -0.54 -10.00 16.23 5.31 0.09 -9.91 16 9 N -0.60 -8.50 2.97 -173.67 -0.52 -9.01 16 10 C 0.11 1.79 6.47 -3.49 -0.02 1.76 16 11 C -0.12 -2.12 4.97 -26.39 -0.13 -2.25 16 12 C -0.11 -1.82 2.29 -90.58 -0.21 -2.03 16 13 C 0.16 2.98 5.21 -4.04 -0.02 2.95 16 14 N -0.60 -13.66 2.41 -173.24 -0.42 -14.08 16 15 C -0.24 -6.20 7.57 -15.06 -0.11 -6.32 16 16 H 0.07 1.85 7.96 -52.48 -0.42 1.43 16 17 C 0.00 -0.01 4.76 -17.43 -0.08 -0.09 16 18 N -0.89 -23.89 8.74 55.49 0.48 -23.40 16 19 Si 0.89 21.19 29.64 -169.99 -5.04 16.15 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.17 3.91 5.64 -4.04 -0.02 3.89 16 24 C -0.15 -3.38 9.57 37.16 0.36 -3.03 16 25 C -0.13 -1.68 5.36 -26.61 -0.14 -1.83 16 26 C 0.09 1.07 4.77 -3.71 -0.02 1.05 16 27 C -0.09 -0.87 7.33 -39.25 -0.29 -1.16 16 28 C -0.10 -0.90 9.73 -39.26 -0.38 -1.29 16 29 H 0.23 0.65 7.80 -54.09 -0.42 0.23 16 30 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 31 H 0.14 1.48 7.99 -52.48 -0.42 1.06 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.52 7.00 -51.93 -0.36 1.15 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.11 2.35 6.26 -51.93 -0.32 2.03 16 36 H 0.07 1.26 5.79 -51.93 -0.30 0.96 16 37 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 38 H 0.04 0.63 7.94 -51.93 -0.41 0.22 16 39 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 40 H 0.08 1.95 6.11 -51.93 -0.32 1.63 16 41 H 0.00 0.05 7.97 -51.94 -0.41 -0.37 16 42 H 0.10 2.44 6.05 -51.93 -0.31 2.13 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.01 0.28 5.94 -51.93 -0.31 -0.03 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.09 0.88 4.42 -51.93 -0.23 0.65 16 48 H 0.07 0.72 8.04 -51.93 -0.42 0.30 16 49 H 0.14 1.16 6.00 -52.48 -0.31 0.85 16 50 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 393.62 15.07 5.93 5.93 Total: -1.00 -29.54 393.62 -10.00 -39.53 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.49 Total: 2.06 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -3.04 Total: -7.27 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.45 Total: -46.50 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.04 Total: 16.15 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.54 -10.00 -39.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733919483.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.722 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds