Wall clock time and date at job start Sat Apr 11 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39708 * 119.99513 * 201.02005 * 3 2 1 5 5 C 1.37601 * 120.00287 * 179.97438 * 4 3 2 6 6 C 1.39747 * 119.99658 * 359.97438 * 5 4 3 7 7 C 1.47684 * 120.00231 * 179.97438 * 6 5 4 8 8 O 1.21565 * 120.00338 * 325.27665 * 7 6 5 9 9 N 1.34778 * 119.99549 * 144.99381 * 7 6 5 10 10 C 1.46931 * 120.63080 * 174.27705 * 9 7 6 11 11 C 1.53620 * 108.54171 * 126.37014 * 10 9 7 12 12 C 1.53044 * 109.24094 * 54.86086 * 11 10 9 13 13 C 1.52997 * 109.45920 * 178.48950 * 12 11 10 14 14 N 1.46505 * 109.47187 * 295.06612 * 13 12 11 15 15 C 1.36937 * 120.00267 * 90.00078 * 14 13 12 16 16 H 1.08003 * 119.99700 * 9.33870 * 15 14 13 17 17 C 1.38811 * 120.00406 * 189.33911 * 15 14 13 18 18 N 1.31619 * 119.99605 * 28.92146 * 17 15 14 19 19 Si 1.86801 * 120.00035 * 208.92120 * 17 15 14 20 20 H 1.48497 * 109.47142 * 94.99189 * 19 17 15 21 21 H 1.48493 * 109.46828 * 214.99312 * 19 17 15 22 22 H 1.48504 * 109.47035 * 334.99111 * 19 17 15 23 23 C 1.46500 * 119.99865 * 270.00072 * 14 13 12 24 24 C 1.53002 * 109.47068 * 84.62624 * 23 14 13 25 25 C 1.53042 * 109.53681 * 298.50795 * 12 11 10 26 26 C 1.46928 * 120.63319 * 354.56580 * 9 7 6 27 27 C 1.39741 * 119.98791 * 0.25244 * 6 5 4 28 28 C 1.37600 * 120.00092 * 359.50702 * 27 6 5 29 29 H 4.51942 * 14.06562 * 0.02562 * 4 2 1 30 30 H 1.08004 * 119.99923 * 359.97438 * 4 3 2 31 31 H 1.08005 * 120.00342 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.58712 * 246.21077 * 10 9 7 33 33 H 1.09000 * 109.58457 * 6.63133 * 10 9 7 34 34 H 1.08991 * 109.63674 * 294.86538 * 11 10 9 35 35 H 1.09001 * 109.45701 * 174.73815 * 11 10 9 36 36 H 1.09000 * 109.44983 * 58.52291 * 12 11 10 37 37 H 1.09002 * 109.47567 * 55.06714 * 13 12 11 38 38 H 1.09001 * 109.47445 * 175.07101 * 13 12 11 39 39 H 0.96998 * 119.99752 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.47248 * 204.61934 * 23 14 13 41 41 H 1.08989 * 109.47334 * 324.62491 * 23 14 13 42 42 H 1.09006 * 109.47098 * 59.99653 * 24 23 14 43 43 H 1.08998 * 109.47194 * 180.02562 * 24 23 14 44 44 H 1.08998 * 109.47117 * 300.00111 * 24 23 14 45 45 H 1.08995 * 109.49658 * 301.41517 * 25 12 11 46 46 H 1.08999 * 109.52489 * 181.33588 * 25 12 11 47 47 H 1.09002 * 109.58530 * 353.36684 * 26 9 7 48 48 H 1.08996 * 109.58945 * 113.65211 * 26 9 7 49 49 H 1.08006 * 119.99866 * 179.75113 * 27 6 5 50 50 H 1.08002 * 119.99765 * 180.23071 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3039 1.1304 0.4340 5 6 4.6799 1.1310 0.4346 6 6 5.3793 0.0013 0.0015 7 6 6.8561 0.0020 0.0015 8 8 7.4635 1.0248 -0.2488 9 7 7.5304 -1.1301 0.2846 10 6 8.9942 -1.1789 0.1671 11 6 9.5747 -1.6814 1.4976 12 6 8.9284 -3.0216 1.8557 13 6 9.5303 -3.5451 3.1612 14 7 10.9513 -3.8398 2.9602 15 6 11.8903 -2.8687 3.1842 16 1 11.6037 -1.9377 3.6506 17 6 13.2106 -3.0807 2.8118 18 7 13.4892 -3.8702 1.7961 19 14 14.5920 -2.2456 3.7520 20 1 15.1091 -3.1678 4.7947 21 1 15.6880 -1.8949 2.8135 22 1 14.0767 -1.0102 4.3951 23 6 11.3675 -5.1735 2.5196 24 6 11.2765 -5.2584 0.9947 25 6 7.4198 -2.8320 2.0299 26 6 6.8153 -2.3408 0.7107 27 6 4.6809 -1.1269 -0.4370 28 6 3.3049 -1.1290 -0.4328 29 1 -1.0500 -0.0010 0.0001 30 1 2.7634 2.0034 0.7691 31 1 5.2195 2.0045 0.7697 32 1 9.2738 -1.8595 -0.6371 33 1 9.3770 -0.1809 -0.0465 34 1 9.3682 -0.9561 2.2845 35 1 10.6522 -1.8125 1.3973 36 1 9.1143 -3.7393 1.0566 37 1 9.4225 -2.7898 3.9397 38 1 9.0099 -4.4543 3.4625 39 1 14.4118 -4.0186 1.5361 40 1 12.3957 -5.3552 2.8328 41 1 10.7141 -5.9237 2.9649 42 1 11.9300 -4.5081 0.5494 43 1 11.5858 -6.2508 0.6669 44 1 10.2484 -5.0766 0.6814 45 1 7.2335 -2.0958 2.8118 46 1 6.9629 -3.7817 2.3081 47 1 5.7600 -2.1098 0.8559 48 1 6.9187 -3.1135 -0.0511 49 1 5.2212 -1.9987 -0.7756 50 1 2.7653 -2.0023 -0.7682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733919483.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:40 Heat of formation + Delta-G solvation = 65.739648 kcal Electronic energy + Delta-G solvation = -29593.951514 eV Core-core repulsion = 25781.148860 eV Total energy + Delta-G solvation = -3812.802654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.72329 -39.85224 -38.94890 -37.43510 -35.05600 -34.41340 -32.85627 -32.45087 -31.92186 -31.25023 -30.72242 -28.29646 -26.20336 -25.10218 -24.49812 -23.55902 -23.42430 -22.18229 -21.36938 -20.33170 -19.96407 -18.57978 -18.37465 -17.44165 -16.85244 -16.67350 -16.51066 -15.82449 -15.75374 -15.60800 -15.40083 -15.09164 -14.89507 -14.71517 -14.52089 -14.33961 -14.16662 -13.96585 -13.70692 -13.57642 -13.27698 -13.04942 -12.94492 -12.71987 -12.63513 -12.41019 -12.37432 -12.21784 -12.04178 -11.93431 -11.84949 -11.60792 -11.41857 -11.35576 -11.17701 -10.98489 -10.81631 -10.27075 -10.02882 -9.77002 -9.51240 -8.73402 -7.76356 -5.01224 -0.47815 0.30011 1.45105 1.46495 1.52019 1.56520 1.77902 1.88326 2.18650 2.58408 2.93544 3.26779 3.30936 3.43760 3.71183 3.80792 3.87827 3.97263 4.01217 4.15296 4.22540 4.26037 4.37802 4.44079 4.51894 4.55243 4.63165 4.72488 4.80737 4.87251 4.89438 4.94105 4.95602 5.00936 5.10805 5.12471 5.21068 5.23580 5.26809 5.29517 5.32178 5.35171 5.36627 5.44906 5.65446 5.71324 5.74816 5.76874 5.87131 6.27567 6.36145 6.42591 6.57400 7.02621 7.29845 8.02769 8.42417 9.25160 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.002429 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.578755 B =11524.369648 C =12098.435264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.205 4.205 3 C 0.026 3.974 4 C -0.104 4.104 5 C -0.073 4.073 6 C -0.135 4.135 7 C 0.551 3.449 8 O -0.587 6.587 9 N -0.596 5.596 10 C 0.120 3.880 11 C -0.107 4.107 12 C -0.098 4.098 13 C 0.153 3.847 14 N -0.607 5.607 15 C -0.235 4.235 16 H 0.063 0.937 17 C -0.046 4.046 18 N -0.906 5.906 19 Si 0.933 3.067 20 H -0.295 1.295 21 H -0.303 1.303 22 H -0.280 1.280 23 C 0.173 3.827 24 C -0.140 4.140 25 C -0.123 4.123 26 C 0.092 3.908 27 C -0.083 4.083 28 C -0.099 4.099 29 H 0.260 0.740 30 H 0.148 0.852 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.035 0.965 38 H 0.059 0.941 39 H 0.243 0.757 40 H 0.042 0.958 41 H 0.026 0.974 42 H 0.063 0.937 43 H 0.026 0.974 44 H 0.032 0.968 45 H 0.057 0.943 46 H 0.099 0.901 47 H 0.116 0.884 48 H 0.091 0.909 49 H 0.159 0.841 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.039 1.535 -4.256 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.205 4.205 3 C 0.026 3.974 4 C -0.122 4.122 5 C -0.092 4.092 6 C -0.138 4.138 7 C 0.341 3.659 8 O -0.469 6.469 9 N -0.327 5.327 10 C -0.003 4.003 11 C -0.145 4.145 12 C -0.119 4.119 13 C 0.027 3.973 14 N -0.329 5.329 15 C -0.365 4.365 16 H 0.081 0.919 17 C -0.242 4.242 18 N -0.554 5.554 19 Si 0.764 3.236 20 H -0.222 1.222 21 H -0.231 1.231 22 H -0.205 1.205 23 C 0.047 3.953 24 C -0.199 4.199 25 C -0.161 4.161 26 C -0.029 4.029 27 C -0.101 4.101 28 C -0.117 4.117 29 H 0.277 0.723 30 H 0.165 0.835 31 H 0.147 0.853 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.118 0.882 47 H 0.133 0.867 48 H 0.109 0.891 49 H 0.176 0.824 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -26.536 2.003 -4.407 26.974 hybrid contribution 1.668 0.752 0.402 1.873 sum -24.868 2.755 -4.006 25.339 Atomic orbital electron populations 1.25842 0.96535 0.96606 0.96079 1.20257 0.92460 1.03839 1.03951 1.16379 0.87522 0.94743 0.98747 1.21290 0.92968 0.98485 0.99453 1.21162 0.94208 0.96901 0.96949 1.19941 0.91430 0.97044 1.05399 1.18809 0.88176 0.82634 0.76281 1.90748 1.70872 1.33314 1.51944 1.48145 1.07325 1.12034 1.65227 1.21621 0.78977 1.01429 0.98251 1.21762 1.00872 0.96854 0.95057 1.21766 0.94303 0.95933 0.99939 1.20981 0.83515 0.98017 0.94741 1.44374 1.01577 1.08692 1.78271 1.19236 0.88555 0.97746 1.30961 0.91885 1.25122 0.99151 1.01373 0.98529 1.70290 1.17169 1.43322 1.24593 0.85749 0.80840 0.78068 0.78938 1.22226 1.23072 1.20521 1.20541 0.97446 0.84016 0.93261 1.22248 0.99025 0.99733 0.98927 1.21942 0.94799 1.02420 0.96957 1.22540 0.97613 0.85723 0.96994 1.21611 0.94418 0.96980 0.97127 1.21404 0.93266 0.98261 0.98782 0.72347 0.83452 0.85301 0.90984 0.91567 0.94374 0.91636 0.91690 0.94619 0.92308 0.94734 0.93979 0.95572 0.91814 0.95485 0.94892 0.92464 0.88224 0.86672 0.89119 0.82366 0.82388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 19.25 74.32 1.43 0.13 16 2 C -0.21 -3.07 13.23 30.02 0.40 -2.68 16 3 C 0.03 0.44 5.73 -21.32 -0.12 0.32 16 4 C -0.10 -1.83 9.73 22.47 0.22 -1.61 16 5 C -0.07 -1.59 9.59 22.48 0.22 -1.37 16 6 C -0.14 -3.12 5.31 -20.05 -0.11 -3.22 16 7 C 0.55 16.69 7.38 86.74 0.64 17.33 16 8 O -0.59 -22.80 16.23 -3.92 -0.06 -22.86 16 9 N -0.60 -16.55 2.97 -821.65 -2.44 -18.98 16 10 C 0.12 3.96 6.47 86.51 0.56 4.52 16 11 C -0.11 -3.94 4.97 30.82 0.15 -3.79 16 12 C -0.10 -3.11 2.29 -10.77 -0.02 -3.14 16 13 C 0.15 5.60 5.21 86.38 0.45 6.05 16 14 N -0.61 -27.83 2.41 -702.00 -1.69 -29.52 16 15 C -0.23 -12.18 7.57 84.03 0.64 -11.55 16 16 H 0.06 3.33 7.96 -2.91 -0.02 3.31 16 17 C -0.05 -2.50 4.76 84.86 0.40 -2.09 16 18 N -0.91 -50.25 8.74 21.65 0.19 -50.06 16 19 Si 0.93 44.90 29.64 68.60 2.03 46.93 16 20 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 21 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 23 C 0.17 7.82 5.64 86.38 0.49 8.31 16 24 C -0.14 -6.02 9.57 71.98 0.69 -5.33 16 25 C -0.12 -2.79 5.36 30.67 0.16 -2.62 16 26 C 0.09 1.84 4.77 86.36 0.41 2.25 16 27 C -0.08 -1.37 7.33 22.48 0.16 -1.21 16 28 C -0.10 -1.43 9.73 22.48 0.22 -1.21 16 29 H 0.26 0.17 7.80 -4.42 -0.03 0.14 16 30 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.13 2.91 7.99 -2.91 -0.02 2.89 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.46 7.00 -2.39 -0.02 2.44 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 2.99 6.26 -2.39 -0.01 2.98 16 36 H 0.06 2.17 5.79 -2.39 -0.01 2.16 16 37 H 0.04 1.34 8.03 -2.39 -0.02 1.32 16 38 H 0.06 1.89 7.94 -2.39 -0.02 1.87 16 39 H 0.24 13.40 8.31 -92.71 -0.77 12.63 16 40 H 0.04 2.19 6.11 -2.38 -0.01 2.18 16 41 H 0.03 1.05 7.97 -2.39 -0.02 1.03 16 42 H 0.06 3.23 6.05 -2.38 -0.01 3.21 16 43 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.03 1.26 5.94 -2.39 -0.01 1.24 16 45 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.12 1.80 4.42 -2.39 -0.01 1.79 16 48 H 0.09 1.49 8.04 -2.39 -0.02 1.47 16 49 H 0.16 2.01 6.00 -2.91 -0.02 1.99 16 50 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -67.63 393.62 5.95 -61.68 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.93 Total: 13.74 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 6.99 Total: -0.93 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -3.94 Total: -98.56 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.06 Total: -22.86 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -67.63 5.95 -61.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733919483.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.415 kcal (2) G-P(sol) polarization free energy of solvation -67.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds