Wall clock time and date at job start Sat Apr 11 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47105 * 2 1 4 4 C 1.46504 * 119.99991 * 269.99892 * 3 2 1 5 5 C 1.50694 * 109.47473 * 270.00192 * 4 3 2 6 6 H 1.08006 * 119.99884 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00331 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99792 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00389 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46897 * 60.00259 * 9 7 5 11 11 H 1.48503 * 109.47333 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47166 * 300.00188 * 9 7 5 13 13 C 1.34776 * 120.00290 * 90.00494 * 3 2 1 14 14 O 1.21282 * 119.99837 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99767 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.46943 * 180.02562 * 15 13 3 17 17 C 1.46905 * 110.99870 * 180.02562 * 16 15 13 18 18 H 1.08996 * 110.64023 * 325.70203 * 17 16 15 19 19 C 1.55160 * 110.71891 * 202.56127 * 17 16 15 20 20 C 1.54912 * 101.57678 * 206.13508 * 19 17 16 21 21 H 1.08996 * 110.36789 * 278.16512 * 20 19 17 22 22 C 1.53001 * 110.36306 * 155.95789 * 20 19 17 23 23 N 1.47425 * 104.83430 * 37.01105 * 20 19 17 24 24 C 1.34776 * 125.64509 * 155.91039 * 23 20 19 25 25 O 1.21341 * 120.00249 * 359.97438 * 24 23 20 26 26 C 1.49459 * 119.99669 * 179.97438 * 24 23 20 27 27 N 1.34776 * 119.99669 * 180.02562 * 26 24 23 28 28 O 1.21345 * 119.99735 * 359.97438 * 26 24 23 29 29 C 1.47319 * 108.73645 * 335.71401 * 23 20 19 30 30 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46734 * 299.99636 * 1 2 3 32 32 H 1.08992 * 109.47153 * 59.99893 * 1 2 3 33 33 H 1.09002 * 109.46906 * 239.99837 * 2 1 3 34 34 H 1.09002 * 109.47667 * 120.00186 * 2 1 3 35 35 H 1.08999 * 109.47061 * 30.00401 * 4 3 2 36 36 H 1.08996 * 109.47411 * 149.99808 * 4 3 2 37 37 H 0.96997 * 119.99699 * 179.97438 * 8 7 5 38 38 H 1.09004 * 109.46763 * 60.00720 * 15 13 3 39 39 H 1.08995 * 109.47483 * 300.00377 * 15 13 3 40 40 H 1.00901 * 111.00067 * 303.95401 * 16 15 13 41 41 H 1.08999 * 111.00220 * 324.20951 * 19 17 16 42 42 H 1.08994 * 111.00358 * 88.06074 * 19 17 16 43 43 H 1.09008 * 109.47089 * 59.99944 * 22 20 19 44 44 H 1.08995 * 109.47098 * 179.97438 * 22 20 19 45 45 H 1.09002 * 109.47584 * 299.99864 * 22 20 19 46 46 H 0.96996 * 120.00232 * 359.97438 * 27 26 24 47 47 H 0.96998 * 119.99490 * 179.97438 * 27 26 24 48 48 H 1.09000 * 110.06334 * 241.87674 * 29 23 20 49 49 H 1.08992 * 109.85108 * 120.60944 * 29 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0963 7 6 4.1490 2.3896 -2.8780 8 7 3.3487 3.1249 -3.6187 9 14 5.9134 2.0967 -3.4170 10 1 6.1416 0.6400 -3.5938 11 1 6.1605 2.7956 -4.7038 12 1 6.8406 2.6210 -2.3823 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9914 1.3063 2.4722 16 7 2.3093 2.2065 3.5888 17 6 2.0760 1.5462 4.8802 18 1 1.2264 0.8665 4.8162 19 6 1.8561 2.5958 6.0015 20 6 2.3109 1.8098 7.2566 21 1 1.5076 1.1644 7.6117 22 6 2.7446 2.7754 8.3613 23 7 3.4558 1.0006 6.8008 24 6 4.4420 0.5230 7.5855 25 8 4.4334 0.7511 8.7772 26 6 5.5463 -0.2876 6.9877 27 7 6.5322 -0.7657 7.7725 28 8 5.5545 -0.5161 5.7960 29 6 3.3416 0.7961 5.3463 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.5817 1.6877 -2.0284 36 1 2.0955 3.1410 -1.1385 37 1 3.6747 3.5153 -4.4445 38 1 2.6214 0.4187 2.5301 39 1 0.9434 1.0125 2.5299 40 1 3.2576 2.5446 3.5220 41 1 2.4816 3.4742 5.8426 42 1 0.8050 2.8748 6.0749 43 1 1.9074 3.4200 8.6298 44 1 3.0608 2.2078 9.2364 45 1 3.5739 3.3865 8.0050 46 1 6.5253 -0.5834 8.7251 47 1 7.2486 -1.2921 7.3845 48 1 3.2453 -0.2667 5.1246 49 1 4.2196 1.2035 4.8452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734421976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:00 Heat of formation + Delta-G solvation = -91.954087 kcal Electronic energy + Delta-G solvation = -30344.695026 eV Core-core repulsion = 26114.204995 eV Total energy + Delta-G solvation = -4230.490031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.16365 -39.43294 -38.94107 -38.01360 -35.46324 -34.90084 -34.02536 -32.77595 -32.16975 -30.43744 -30.02784 -27.59595 -26.28533 -25.75392 -24.99279 -23.00354 -22.42596 -21.88434 -21.23659 -19.87335 -18.43281 -18.17952 -17.56857 -16.92717 -16.64329 -16.36031 -16.15783 -15.94809 -15.51193 -15.23661 -14.83059 -14.56013 -14.22924 -14.10329 -13.87738 -13.80474 -13.34666 -13.32767 -13.06843 -12.77848 -12.59221 -12.44200 -12.27684 -12.05435 -11.97344 -11.87868 -11.54949 -11.44922 -11.25467 -11.15331 -10.96347 -10.89726 -10.72127 -10.50484 -10.26610 -10.11155 -9.83489 -9.62823 -9.14233 -8.90583 -8.41270 -8.38949 -7.63203 -6.02304 -4.07022 1.09436 2.03530 2.87521 3.24803 3.33124 3.37483 3.39353 3.47403 3.71005 4.11216 4.14451 4.36573 4.41293 4.47975 4.75882 4.84393 4.94208 5.06101 5.09784 5.27810 5.31815 5.32314 5.40905 5.45963 5.50512 5.53759 5.64767 5.67333 5.72381 5.80394 5.82138 5.90963 6.03889 6.11797 6.14842 6.24598 6.49303 6.57609 6.80225 6.91743 7.13098 7.30309 7.36967 7.48136 7.58050 7.67980 7.94441 8.26011 8.45900 8.92588 9.13680 9.58100 11.05704 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.002617 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.544650 B =10696.060627 C =11754.906820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.504 3.496 14 O -0.529 6.529 15 C 0.037 3.963 16 N -0.656 5.656 17 C 0.075 3.925 18 H 0.097 0.903 19 C -0.117 4.117 20 C 0.131 3.869 21 H 0.083 0.917 22 C -0.163 4.163 23 N -0.581 5.581 24 C 0.520 3.480 25 O -0.522 6.522 26 C 0.511 3.489 27 N -0.824 5.824 28 O -0.512 6.512 29 C 0.075 3.925 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.264 0.736 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.356 0.644 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.413 0.587 47 H 0.411 0.589 48 H 0.080 0.920 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.669 -9.166 24.144 25.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.405 6.405 15 C -0.095 4.095 16 N -0.288 5.288 17 C -0.037 4.037 18 H 0.115 0.885 19 C -0.156 4.156 20 C 0.029 3.971 21 H 0.101 0.899 22 C -0.221 4.221 23 N -0.316 5.316 24 C 0.303 3.697 25 O -0.399 6.399 26 C 0.290 3.710 27 N -0.391 5.391 28 O -0.387 6.387 29 C -0.049 4.049 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.177 0.823 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.243 0.757 47 H 0.244 0.756 48 H 0.098 0.902 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.177 -8.068 23.784 25.315 hybrid contribution 2.106 -1.120 -0.211 2.394 sum -1.071 -9.188 23.573 25.323 Atomic orbital electron populations 1.22222 0.96796 1.01336 1.02386 1.21410 0.93503 0.84299 1.02610 1.48247 1.63978 1.13189 1.07707 1.19244 0.96141 0.93667 0.78101 1.21402 0.96984 1.31900 1.06238 0.92592 1.24928 0.97790 0.94946 0.96402 1.69924 1.35689 1.33445 1.14346 0.86575 0.84890 0.78224 0.77816 1.20283 1.21189 1.20195 1.20135 0.78946 0.87066 0.84857 1.90681 1.45187 1.17712 1.86927 1.21999 1.02401 0.94547 0.90531 1.60268 1.33053 1.36272 0.99173 1.22756 0.96220 0.94792 0.89931 0.88539 1.22918 1.03143 0.98115 0.91381 1.22155 0.87025 0.92143 0.95809 0.89871 1.22147 1.01769 0.99010 0.99164 1.48382 1.23322 1.50447 1.09426 1.19715 0.82688 0.81139 0.86167 1.90713 1.76457 1.58321 1.14433 1.20125 0.83583 0.80610 0.86730 1.43507 1.26627 1.55709 1.13229 1.90855 1.76224 1.56884 1.14692 1.23242 1.00073 1.02159 0.79462 0.92248 0.93031 0.92008 0.89987 0.91889 0.95070 0.93882 0.92684 0.92556 0.88562 0.82299 0.89508 0.88929 0.91448 0.89884 0.92376 0.75687 0.75630 0.90206 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.63 16 3 N -0.60 -12.42 2.46 -175.06 -0.43 -12.85 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.43 16 5 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.50 10.24 7.71 -10.99 -0.08 10.15 16 14 O -0.53 -13.18 15.78 5.56 0.09 -13.09 16 15 C 0.04 0.53 4.59 -4.98 -0.02 0.51 16 16 N -0.66 -8.68 5.99 -106.05 -0.64 -9.32 16 17 C 0.07 0.72 3.24 -65.87 -0.21 0.51 16 18 H 0.10 0.80 7.86 -51.93 -0.41 0.40 16 19 C -0.12 -1.00 6.19 -24.58 -0.15 -1.15 16 20 C 0.13 1.12 3.76 -66.42 -0.25 0.87 16 21 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 22 C -0.16 -1.39 8.60 37.16 0.32 -1.07 16 23 N -0.58 -5.90 3.25 -163.31 -0.53 -6.43 16 24 C 0.52 5.64 7.70 -11.58 -0.09 5.55 16 25 O -0.52 -6.09 14.20 5.50 0.08 -6.01 16 26 C 0.51 5.27 8.13 -11.58 -0.09 5.17 16 27 N -0.82 -5.31 8.87 30.91 0.27 -5.04 16 28 O -0.51 -6.73 14.96 5.50 0.08 -6.65 16 29 C 0.08 0.78 5.21 -2.90 -0.02 0.77 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.63 7.22 -51.93 -0.37 0.25 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.06 0.72 7.40 -51.93 -0.38 0.34 16 39 H 0.10 1.16 7.12 -51.93 -0.37 0.79 16 40 H 0.36 5.21 7.80 -39.29 -0.31 4.90 16 41 H 0.09 0.84 8.06 -51.93 -0.42 0.42 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 44 H 0.08 0.82 6.10 -51.93 -0.32 0.51 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.41 2.00 8.30 -40.82 -0.34 1.66 16 47 H 0.41 1.93 8.93 -40.82 -0.36 1.57 16 48 H 0.08 0.83 7.71 -51.93 -0.40 0.43 16 49 H 0.08 1.00 6.96 -51.93 -0.36 0.64 16 LS Contribution 399.40 15.07 6.02 6.02 Total: -1.00 -35.68 399.40 -7.72 -43.39 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.68 Total: 5.05 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: -0.69 Total: 13.93 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.59 Total: -59.64 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: 0.25 Total: -25.75 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.68 -7.72 -43.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734421976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.559 kcal (2) G-P(sol) polarization free energy of solvation -35.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds