Wall clock time and date at job start Sat Apr 11 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47105 * 2 1 4 4 C 1.46504 * 119.99991 * 269.99892 * 3 2 1 5 5 C 1.50694 * 109.47473 * 270.00192 * 4 3 2 6 6 H 1.08006 * 119.99884 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00331 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99792 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00389 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46897 * 60.00259 * 9 7 5 11 11 H 1.48503 * 109.47333 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47166 * 300.00188 * 9 7 5 13 13 C 1.34776 * 120.00290 * 90.00494 * 3 2 1 14 14 O 1.21282 * 119.99837 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99767 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.46943 * 180.02562 * 15 13 3 17 17 C 1.46905 * 110.99870 * 180.02562 * 16 15 13 18 18 H 1.08996 * 110.64023 * 325.70203 * 17 16 15 19 19 C 1.55160 * 110.71891 * 202.56127 * 17 16 15 20 20 C 1.54912 * 101.57678 * 206.13508 * 19 17 16 21 21 H 1.08996 * 110.36789 * 278.16512 * 20 19 17 22 22 C 1.53001 * 110.36306 * 155.95789 * 20 19 17 23 23 N 1.47425 * 104.83430 * 37.01105 * 20 19 17 24 24 C 1.34776 * 125.64509 * 155.91039 * 23 20 19 25 25 O 1.21341 * 120.00249 * 359.97438 * 24 23 20 26 26 C 1.49459 * 119.99669 * 179.97438 * 24 23 20 27 27 N 1.34776 * 119.99669 * 180.02562 * 26 24 23 28 28 O 1.21345 * 119.99735 * 359.97438 * 26 24 23 29 29 C 1.47319 * 108.73645 * 335.71401 * 23 20 19 30 30 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46734 * 299.99636 * 1 2 3 32 32 H 1.08992 * 109.47153 * 59.99893 * 1 2 3 33 33 H 1.09002 * 109.46906 * 239.99837 * 2 1 3 34 34 H 1.09002 * 109.47667 * 120.00186 * 2 1 3 35 35 H 1.08999 * 109.47061 * 30.00401 * 4 3 2 36 36 H 1.08996 * 109.47411 * 149.99808 * 4 3 2 37 37 H 0.96997 * 119.99699 * 179.97438 * 8 7 5 38 38 H 1.09004 * 109.46763 * 60.00720 * 15 13 3 39 39 H 1.08995 * 109.47483 * 300.00377 * 15 13 3 40 40 H 1.00901 * 111.00067 * 303.95401 * 16 15 13 41 41 H 1.08999 * 111.00220 * 324.20951 * 19 17 16 42 42 H 1.08994 * 111.00358 * 88.06074 * 19 17 16 43 43 H 1.09008 * 109.47089 * 59.99944 * 22 20 19 44 44 H 1.08995 * 109.47098 * 179.97438 * 22 20 19 45 45 H 1.09002 * 109.47584 * 299.99864 * 22 20 19 46 46 H 0.96996 * 120.00232 * 359.97438 * 27 26 24 47 47 H 0.96998 * 119.99490 * 179.97438 * 27 26 24 48 48 H 1.09000 * 110.06334 * 241.87674 * 29 23 20 49 49 H 1.08992 * 109.85108 * 120.60944 * 29 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0963 7 6 4.1490 2.3896 -2.8780 8 7 3.3487 3.1249 -3.6187 9 14 5.9134 2.0967 -3.4170 10 1 6.1416 0.6400 -3.5938 11 1 6.1605 2.7956 -4.7038 12 1 6.8406 2.6210 -2.3823 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9914 1.3063 2.4722 16 7 2.3093 2.2065 3.5888 17 6 2.0760 1.5462 4.8802 18 1 1.2264 0.8665 4.8162 19 6 1.8561 2.5958 6.0015 20 6 2.3109 1.8098 7.2566 21 1 1.5076 1.1644 7.6117 22 6 2.7446 2.7754 8.3613 23 7 3.4558 1.0006 6.8008 24 6 4.4420 0.5230 7.5855 25 8 4.4334 0.7511 8.7772 26 6 5.5463 -0.2876 6.9877 27 7 6.5322 -0.7657 7.7725 28 8 5.5545 -0.5161 5.7960 29 6 3.3416 0.7961 5.3463 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.5817 1.6877 -2.0284 36 1 2.0955 3.1410 -1.1385 37 1 3.6747 3.5153 -4.4445 38 1 2.6214 0.4187 2.5301 39 1 0.9434 1.0125 2.5299 40 1 3.2576 2.5446 3.5220 41 1 2.4816 3.4742 5.8426 42 1 0.8050 2.8748 6.0749 43 1 1.9074 3.4200 8.6298 44 1 3.0608 2.2078 9.2364 45 1 3.5739 3.3865 8.0050 46 1 6.5253 -0.5834 8.7251 47 1 7.2486 -1.2921 7.3845 48 1 3.2453 -0.2667 5.1246 49 1 4.2196 1.2035 4.8452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734421976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:59 Heat of formation + Delta-G solvation = -121.670474 kcal Electronic energy + Delta-G solvation = -30345.983625 eV Core-core repulsion = 26114.204995 eV Total energy + Delta-G solvation = -4231.778630 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.96020 -40.74277 -39.96827 -38.90432 -36.96660 -36.03330 -34.88856 -34.71835 -32.91409 -31.71814 -31.22518 -29.28364 -27.11575 -26.99542 -25.95648 -24.63863 -23.84873 -22.75354 -22.01676 -20.61886 -19.93019 -18.90637 -18.61065 -18.39537 -17.89726 -17.68985 -17.26369 -17.01207 -16.77677 -16.40238 -16.22375 -15.70378 -15.26886 -15.15862 -14.89358 -14.75008 -14.61957 -14.55106 -14.26819 -14.03182 -13.58201 -13.55099 -13.46870 -13.22278 -13.10161 -13.08665 -12.96240 -12.69793 -12.63167 -12.47440 -12.33915 -12.12684 -11.99319 -11.84564 -11.72111 -11.68580 -10.94437 -10.66658 -10.63779 -10.52149 -9.92348 -9.42476 -9.37063 -8.21625 -6.36518 0.28797 1.30418 1.35752 1.39962 1.47232 1.90042 2.06821 2.25278 2.41269 2.55989 3.07457 3.14433 3.44048 3.52513 3.68167 3.78169 4.02588 4.09855 4.13975 4.22762 4.35728 4.38048 4.43048 4.51141 4.61215 4.68198 4.70636 4.75550 4.89647 4.97496 5.03322 5.04394 5.08872 5.13530 5.20483 5.25123 5.42140 5.43673 5.53979 5.59466 5.85546 5.92467 5.97149 6.08333 6.11125 6.23464 6.64462 6.71857 6.86564 6.98448 7.29859 7.55395 8.85078 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.002617 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.544650 B =10696.060627 C =11754.906820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.493 3.507 14 O -0.588 6.588 15 C 0.055 3.945 16 N -0.668 5.668 17 C 0.081 3.919 18 H 0.124 0.876 19 C -0.111 4.111 20 C 0.130 3.870 21 H 0.103 0.897 22 C -0.158 4.158 23 N -0.582 5.582 24 C 0.516 3.484 25 O -0.534 6.534 26 C 0.508 3.492 27 N -0.802 5.802 28 O -0.546 6.546 29 C 0.082 3.918 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.021 0.979 36 H -0.005 1.005 37 H 0.267 0.733 38 H 0.078 0.922 39 H 0.129 0.871 40 H 0.344 0.656 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.042 0.958 46 H 0.423 0.577 47 H 0.422 0.578 48 H 0.083 0.917 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.102 -11.403 25.927 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.581 4.581 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.282 3.718 14 O -0.468 6.468 15 C -0.076 4.076 16 N -0.300 5.300 17 C -0.030 4.030 18 H 0.142 0.858 19 C -0.149 4.149 20 C 0.029 3.971 21 H 0.121 0.879 22 C -0.215 4.215 23 N -0.317 5.317 24 C 0.298 3.702 25 O -0.412 6.412 26 C 0.286 3.714 27 N -0.369 5.369 28 O -0.424 6.424 29 C -0.043 4.043 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.039 0.961 36 H 0.013 0.987 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.147 0.853 40 H 0.163 0.837 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.061 0.939 46 H 0.255 0.745 47 H 0.256 0.744 48 H 0.101 0.899 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.627 -10.367 25.620 27.875 hybrid contribution 2.235 -0.406 -0.701 2.377 sum -1.392 -10.773 24.919 27.184 Atomic orbital electron populations 1.22151 0.94432 1.03475 1.01794 1.21750 0.95418 0.81318 1.03836 1.48279 1.64117 1.15089 1.06193 1.18653 0.95088 0.91490 0.80583 1.21696 0.97995 1.31947 1.06488 0.92958 1.25849 1.02301 0.94521 0.96465 1.70047 1.37767 1.34235 1.14793 0.85502 0.79141 0.79019 0.77350 1.18466 1.20302 1.20435 1.21296 0.77342 0.86654 0.86554 1.90646 1.47688 1.20526 1.87926 1.21923 1.04642 0.94095 0.86981 1.60296 1.32374 1.36907 1.00380 1.22850 0.96567 0.95277 0.88290 0.85844 1.22894 1.04005 0.97202 0.90815 1.22315 0.86925 0.92238 0.95663 0.87894 1.22085 1.01999 0.98921 0.98539 1.48480 1.23576 1.50267 1.09329 1.19859 0.82956 0.81234 0.86121 1.90709 1.76784 1.58934 1.14787 1.20160 0.84069 0.80632 0.86501 1.43402 1.25676 1.54301 1.13503 1.90841 1.77136 1.58464 1.15936 1.23118 0.99523 1.02184 0.79461 0.88649 0.91742 0.94515 0.91300 0.88110 0.96138 0.98696 0.92423 0.90411 0.85305 0.83656 0.91123 0.86942 0.89476 0.91177 0.93878 0.74528 0.74408 0.89902 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 10.24 71.98 0.74 -3.02 16 2 C 0.10 2.92 5.93 86.38 0.51 3.43 16 3 N -0.60 -25.36 2.46 -826.17 -2.03 -27.39 16 4 C 0.26 14.40 5.16 85.63 0.44 14.84 16 5 C -0.54 -31.74 9.39 25.60 0.24 -31.50 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.44 5.46 84.65 0.46 0.90 16 8 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 9 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 C 0.49 20.11 7.71 87.66 0.68 20.78 16 14 O -0.59 -30.53 15.78 -3.03 -0.05 -30.58 16 15 C 0.06 1.43 4.59 85.56 0.39 1.82 16 16 N -0.67 -16.80 5.99 -489.43 -2.93 -19.73 16 17 C 0.08 1.36 3.24 46.10 0.15 1.51 16 18 H 0.12 1.48 7.86 -2.39 -0.02 1.46 16 19 C -0.11 -1.65 6.19 31.99 0.20 -1.45 16 20 C 0.13 1.93 3.76 45.47 0.17 2.10 16 21 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 22 C -0.16 -2.47 8.60 71.98 0.62 -1.85 16 23 N -0.58 -11.03 3.25 -788.97 -2.56 -13.59 16 24 C 0.52 10.67 7.70 87.27 0.67 11.34 16 25 O -0.53 -11.91 14.20 -3.22 -0.05 -11.95 16 26 C 0.51 10.05 8.13 87.27 0.71 10.76 16 27 N -0.80 -9.28 8.87 -174.50 -1.55 -10.83 16 28 O -0.55 -14.09 14.96 -3.23 -0.05 -14.14 16 29 C 0.08 1.58 5.21 86.67 0.45 2.03 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.35 7.22 -2.39 -0.02 1.33 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 34 H 0.10 2.22 6.44 -2.39 -0.02 2.20 16 35 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 36 H -0.01 -0.32 7.42 -2.39 -0.02 -0.34 16 37 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 38 H 0.08 1.72 7.40 -2.39 -0.02 1.71 16 39 H 0.13 2.53 7.12 -2.39 -0.02 2.51 16 40 H 0.34 10.15 7.80 -89.69 -0.70 9.45 16 41 H 0.07 1.31 8.06 -2.39 -0.02 1.29 16 42 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.07 1.31 6.10 -2.39 -0.01 1.29 16 45 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.42 3.44 8.30 -92.71 -0.77 2.67 16 47 H 0.42 3.34 8.93 -92.71 -0.83 2.51 16 48 H 0.08 1.56 7.71 -2.39 -0.02 1.54 16 49 H 0.06 1.45 6.96 -2.39 -0.02 1.43 16 Total: -1.00 -82.35 399.40 -1.77 -84.12 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -1.30 Total: 21.50 kcal Atomic # 6 Polarization: 25.28 SS G_CDS: 6.43 Total: 31.71 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -8.79 Total: -128.30 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: -0.14 Total: -56.68 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -82.35 -1.77 -84.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734421976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.546 kcal (2) G-P(sol) polarization free energy of solvation -82.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds