Wall clock time and date at job start Sat Apr 11 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21286 * 120.00165 * 2 1 4 4 N 1.34774 * 120.00303 * 179.97438 * 2 1 3 5 5 C 1.46501 * 120.00035 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.46808 * 60.00593 * 5 4 2 7 7 C 1.52990 * 109.47500 * 300.00521 * 5 4 2 8 8 C 1.50703 * 109.46891 * 180.02562 * 5 4 2 9 9 O 1.21284 * 119.99777 * 145.00593 * 8 5 4 10 10 N 1.34780 * 120.00001 * 325.00077 * 8 5 4 11 11 C 1.46496 * 119.99817 * 180.02562 * 10 8 5 12 12 H 1.09002 * 112.84988 * 336.19797 * 11 10 8 13 13 C 1.53955 * 113.61625 * 107.46939 * 11 10 8 14 14 C 1.53785 * 87.01964 * 89.19699 * 13 11 10 15 15 H 1.09001 * 113.61484 * 270.77425 * 14 13 11 16 16 N 1.46895 * 113.61422 * 139.95513 * 14 13 11 17 17 C 1.46896 * 111.00306 * 105.86362 * 16 14 13 18 18 C 1.50696 * 109.47452 * 180.02562 * 17 16 14 19 19 O 1.21292 * 119.99879 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00137 * 180.02562 * 18 17 16 21 21 C 1.37105 * 119.99968 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99700 * 359.71718 * 21 20 18 23 23 C 1.38942 * 119.99884 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00009 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00057 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00086 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00037 * 25 23 21 28 28 H 1.48494 * 109.47204 * 329.99556 * 25 23 21 29 29 C 1.53782 * 87.17239 * 25.36164 * 14 13 11 30 30 H 1.08998 * 109.47021 * 240.00103 * 1 2 3 31 31 H 1.09004 * 109.46774 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.46388 * 119.99844 * 1 2 3 33 33 H 0.97002 * 119.99770 * 0.02562 * 4 2 1 34 34 H 1.09003 * 109.47059 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.47458 * 299.99460 * 6 5 4 36 36 H 1.09003 * 109.47628 * 59.99728 * 6 5 4 37 37 H 1.08996 * 109.47525 * 299.99953 * 7 5 4 38 38 H 1.09004 * 109.47453 * 60.00319 * 7 5 4 39 39 H 1.09003 * 109.47383 * 179.97438 * 7 5 4 40 40 H 0.96994 * 119.99828 * 0.02562 * 10 8 5 41 41 H 1.09002 * 113.66056 * 334.67220 * 13 11 10 42 42 H 1.08993 * 113.61880 * 203.72221 * 13 11 10 43 43 H 1.00900 * 111.00389 * 229.82277 * 16 14 13 44 44 H 1.09000 * 109.47017 * 60.00110 * 17 16 14 45 45 H 1.08996 * 109.47227 * 300.00430 * 17 16 14 46 46 H 0.96999 * 120.00047 * 359.97438 * 20 18 17 47 47 H 0.97005 * 120.00032 * 179.97438 * 24 23 21 48 48 H 1.09001 * 113.61217 * 89.15291 * 29 14 13 49 49 H 1.08996 * 113.62042 * 219.97616 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6460 -1.1671 0.0000 6 6 4.1563 -0.4451 1.2486 7 6 4.1555 -0.4466 -1.2498 8 6 4.1483 -2.5879 0.0001 9 8 5.1615 -2.8729 -0.6026 10 7 3.4718 -3.5418 0.6700 11 6 3.9604 -4.9229 0.6706 12 1 4.5921 -5.1487 -0.1886 13 6 4.5668 -5.3620 2.0158 14 6 3.1508 -5.8080 2.4170 15 1 2.5651 -5.0233 2.8958 16 7 3.1212 -7.0753 3.1593 17 6 2.8502 -6.8445 4.5845 18 6 2.8281 -8.1641 5.3118 19 8 3.0197 -9.1955 4.7029 20 7 2.5954 -8.1983 6.6389 21 6 2.5758 -9.3989 7.3007 22 1 2.7423 -10.3176 6.7577 23 6 2.3364 -9.4342 8.6689 24 7 2.3171 -10.5849 9.3032 25 14 2.0420 -7.8457 9.6068 26 1 0.5897 -7.5359 9.6121 27 1 2.5202 -8.0000 11.0042 28 1 2.7820 -6.7385 8.9499 29 6 2.8577 -5.9664 0.9157 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3632 -0.5139 -0.8901 33 1 1.6959 -2.0072 0.0005 34 1 5.2463 -0.4454 1.2484 35 1 3.7930 0.5825 1.2481 36 1 3.7933 -0.9584 2.1391 37 1 3.7919 -0.9609 -2.1394 38 1 3.7922 0.5811 -1.2503 39 1 5.2455 -0.4462 -1.2500 40 1 2.6613 -3.3139 1.1518 41 1 4.9499 -4.5350 2.6137 42 1 5.2753 -6.1855 1.9274 43 1 2.4469 -7.7118 2.7615 44 1 1.8843 -6.3518 4.6955 45 1 3.6314 -6.2113 5.0050 46 1 2.4425 -7.3735 7.1259 47 1 2.1504 -10.6095 10.2585 48 1 3.0982 -6.9555 0.5259 49 1 1.8626 -5.6281 0.6270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752671438.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:14 Heat of formation + Delta-G solvation = -77.641458 kcal Electronic energy + Delta-G solvation = -29508.158463 eV Core-core repulsion = 25278.289075 eV Total energy + Delta-G solvation = -4229.869388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.33786 -40.04275 -38.94596 -38.22136 -35.98855 -34.79849 -33.93239 -32.65019 -32.54658 -31.67347 -29.50225 -27.72140 -27.24475 -25.96086 -25.09864 -23.93091 -22.68977 -21.40871 -20.16785 -19.68811 -19.36289 -18.76749 -18.33957 -17.22585 -16.49024 -16.16907 -15.89144 -15.70476 -15.47750 -15.22113 -15.13311 -14.76400 -14.56511 -14.37109 -14.18029 -13.73330 -13.64542 -13.22621 -13.19684 -12.98453 -12.71715 -12.69450 -12.63182 -12.45705 -12.28874 -12.25098 -12.14702 -12.03869 -11.74266 -11.57161 -11.21139 -10.78884 -10.71972 -10.62363 -10.57223 -10.01054 -9.95235 -9.77486 -9.61265 -9.48505 -8.62991 -8.26493 -8.20297 -6.34571 -3.86243 1.94379 2.10782 2.53311 2.63664 2.99241 3.02755 3.11869 3.69330 3.99968 4.04841 4.08385 4.20105 4.25961 4.31255 4.48274 4.50396 4.65289 4.72413 4.77044 4.83829 4.92579 5.12983 5.17610 5.23815 5.27320 5.30778 5.36432 5.43344 5.44890 5.51560 5.60715 5.64685 5.69955 5.75587 5.81535 5.85223 5.88132 5.90584 5.93892 6.24015 6.83638 6.95682 7.07041 7.49276 7.54522 7.61226 7.70602 8.10658 8.55762 8.91204 9.38519 9.78307 10.78484 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015276 B = 0.002005 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.461447 B =13959.911133 C =14917.879431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.517 3.483 3 O -0.534 6.534 4 N -0.730 5.730 5 C 0.161 3.839 6 C -0.161 4.161 7 C -0.150 4.150 8 C 0.520 3.480 9 O -0.520 6.520 10 N -0.710 5.710 11 C 0.116 3.884 12 H 0.108 0.892 13 C -0.135 4.135 14 C 0.058 3.942 15 H 0.067 0.933 16 N -0.655 5.655 17 C 0.047 3.953 18 C 0.449 3.551 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C -0.146 4.146 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.400 0.600 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.398 0.602 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.352 0.648 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.370 0.630 47 H 0.274 0.726 48 H 0.107 0.893 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.233 22.952 -18.958 30.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.305 3.695 3 O -0.411 6.411 4 N -0.386 5.386 5 C 0.072 3.928 6 C -0.219 4.219 7 C -0.209 4.209 8 C 0.304 3.696 9 O -0.394 6.394 10 N -0.362 5.362 11 C 0.010 3.990 12 H 0.126 0.874 13 C -0.175 4.175 14 C -0.052 4.052 15 H 0.085 0.915 16 N -0.287 5.287 17 C -0.085 4.085 18 C 0.234 3.766 19 O -0.447 6.447 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 C -0.184 4.184 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.235 0.765 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.233 0.767 41 H 0.085 0.915 42 H 0.121 0.879 43 H 0.173 0.827 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.125 0.875 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.263 22.624 -19.521 29.967 hybrid contribution -1.879 0.941 1.383 2.515 sum -4.141 23.565 -18.138 30.024 Atomic orbital electron populations 1.21960 0.91207 1.05918 1.04512 1.20824 0.90623 0.83164 0.74910 1.90690 1.70493 1.31344 1.48530 1.46259 1.06091 1.09337 1.76911 1.20610 0.80251 0.92563 0.99333 1.22193 1.02246 1.02800 0.94648 1.22055 1.02529 1.01712 0.94562 1.20496 0.84387 0.86348 0.78361 1.90755 1.24235 1.81515 1.42851 1.45808 1.28903 1.08487 1.53000 1.21879 0.97186 0.79875 1.00048 0.87415 1.23578 0.97457 1.01240 0.95190 1.23115 0.97291 0.92228 0.92604 0.91485 1.60198 1.56561 1.10845 1.01121 1.21764 0.99984 0.97062 0.89734 1.19709 0.83989 0.90178 0.82680 1.90568 1.52976 1.34608 1.66500 1.42217 1.64808 1.08641 1.07304 1.19432 1.46232 0.86194 0.91564 0.86269 1.25048 0.97660 0.97158 0.96332 1.69623 1.48346 1.24154 1.09914 0.86667 0.79017 0.83063 0.80603 1.19672 1.20129 1.19499 1.23591 0.98487 1.00237 0.96095 0.89134 0.88667 0.89227 0.76475 0.90792 0.88957 0.92019 0.92279 0.89595 0.90452 0.76714 0.91480 0.87864 0.82683 0.93835 0.89559 0.79717 0.91583 0.87505 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.51 10.32 36.01 0.37 -0.13 16 2 C 0.52 3.28 7.36 -10.99 -0.08 3.20 16 3 O -0.53 -5.44 13.29 5.55 0.07 -5.37 16 4 N -0.73 -3.74 4.86 -48.69 -0.24 -3.98 16 5 C 0.16 1.21 0.98 -132.98 -0.13 1.08 16 6 C -0.16 -1.24 8.38 37.16 0.31 -0.93 16 7 C -0.15 -1.28 7.93 37.15 0.29 -0.99 16 8 C 0.52 4.63 6.65 -10.98 -0.07 4.55 16 9 O -0.52 -6.63 15.69 5.55 0.09 -6.54 16 10 N -0.71 -4.78 4.96 -52.93 -0.26 -5.04 16 11 C 0.12 0.95 4.33 -67.03 -0.29 0.66 16 12 H 0.11 1.04 7.46 -51.93 -0.39 0.65 16 13 C -0.14 -1.34 7.69 -25.82 -0.20 -1.54 16 14 C 0.06 0.56 4.00 -66.90 -0.27 0.29 16 15 H 0.07 0.56 7.88 -51.93 -0.41 0.15 16 16 N -0.65 -9.12 6.18 -107.14 -0.66 -9.78 16 17 C 0.05 0.74 6.02 -4.98 -0.03 0.71 16 18 C 0.45 9.88 7.82 -10.99 -0.09 9.80 16 19 O -0.56 -14.83 15.78 5.55 0.09 -14.74 16 20 N -0.59 -13.77 5.09 -10.96 -0.06 -13.82 16 21 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 22 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.48 13.96 55.50 0.77 -24.71 16 25 Si 0.88 19.04 27.74 -169.99 -4.71 14.33 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 27 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 28 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 29 C -0.15 -1.09 7.42 -25.92 -0.19 -1.28 16 30 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.09 0.32 8.12 -51.93 -0.42 -0.10 16 32 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.40 1.07 7.24 -40.82 -0.30 0.78 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.82 6.17 -51.93 -0.32 0.50 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.80 6.17 -51.93 -0.32 0.48 16 39 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 40 H 0.40 1.72 7.45 -40.82 -0.30 1.42 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.35 5.05 8.26 -39.29 -0.32 4.73 16 44 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 45 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 47 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -35.99 400.46 -7.12 -43.11 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -7.63 Total: 12.77 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -0.62 Total: 7.75 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.44 Total: -57.33 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: 0.25 Total: -26.66 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.33 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.99 -7.12 -43.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752671438.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.532 kcal (2) G-P(sol) polarization free energy of solvation -35.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds