Wall clock time and date at job start Sat Apr 11 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21286 * 120.00165 * 2 1 4 4 N 1.34774 * 120.00303 * 179.97438 * 2 1 3 5 5 C 1.46501 * 120.00035 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.46808 * 60.00593 * 5 4 2 7 7 C 1.52990 * 109.47500 * 300.00521 * 5 4 2 8 8 C 1.50703 * 109.46891 * 180.02562 * 5 4 2 9 9 O 1.21284 * 119.99777 * 145.00593 * 8 5 4 10 10 N 1.34780 * 120.00001 * 325.00077 * 8 5 4 11 11 C 1.46496 * 119.99817 * 180.02562 * 10 8 5 12 12 H 1.09002 * 112.84988 * 336.19797 * 11 10 8 13 13 C 1.53955 * 113.61625 * 107.46939 * 11 10 8 14 14 C 1.53785 * 87.01964 * 89.19699 * 13 11 10 15 15 H 1.09001 * 113.61484 * 270.77425 * 14 13 11 16 16 N 1.46895 * 113.61422 * 139.95513 * 14 13 11 17 17 C 1.46896 * 111.00306 * 105.86362 * 16 14 13 18 18 C 1.50696 * 109.47452 * 180.02562 * 17 16 14 19 19 O 1.21292 * 119.99879 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00137 * 180.02562 * 18 17 16 21 21 C 1.37105 * 119.99968 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99700 * 359.71718 * 21 20 18 23 23 C 1.38942 * 119.99884 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00009 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00057 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00086 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00037 * 25 23 21 28 28 H 1.48494 * 109.47204 * 329.99556 * 25 23 21 29 29 C 1.53782 * 87.17239 * 25.36164 * 14 13 11 30 30 H 1.08998 * 109.47021 * 240.00103 * 1 2 3 31 31 H 1.09004 * 109.46774 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.46388 * 119.99844 * 1 2 3 33 33 H 0.97002 * 119.99770 * 0.02562 * 4 2 1 34 34 H 1.09003 * 109.47059 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.47458 * 299.99460 * 6 5 4 36 36 H 1.09003 * 109.47628 * 59.99728 * 6 5 4 37 37 H 1.08996 * 109.47525 * 299.99953 * 7 5 4 38 38 H 1.09004 * 109.47453 * 60.00319 * 7 5 4 39 39 H 1.09003 * 109.47383 * 179.97438 * 7 5 4 40 40 H 0.96994 * 119.99828 * 0.02562 * 10 8 5 41 41 H 1.09002 * 113.66056 * 334.67220 * 13 11 10 42 42 H 1.08993 * 113.61880 * 203.72221 * 13 11 10 43 43 H 1.00900 * 111.00389 * 229.82277 * 16 14 13 44 44 H 1.09000 * 109.47017 * 60.00110 * 17 16 14 45 45 H 1.08996 * 109.47227 * 300.00430 * 17 16 14 46 46 H 0.96999 * 120.00047 * 359.97438 * 20 18 17 47 47 H 0.97005 * 120.00032 * 179.97438 * 24 23 21 48 48 H 1.09001 * 113.61217 * 89.15291 * 29 14 13 49 49 H 1.08996 * 113.62042 * 219.97616 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6460 -1.1671 0.0000 6 6 4.1563 -0.4451 1.2486 7 6 4.1555 -0.4466 -1.2498 8 6 4.1483 -2.5879 0.0001 9 8 5.1615 -2.8729 -0.6026 10 7 3.4718 -3.5418 0.6700 11 6 3.9604 -4.9229 0.6706 12 1 4.5921 -5.1487 -0.1886 13 6 4.5668 -5.3620 2.0158 14 6 3.1508 -5.8080 2.4170 15 1 2.5651 -5.0233 2.8958 16 7 3.1212 -7.0753 3.1593 17 6 2.8502 -6.8445 4.5845 18 6 2.8281 -8.1641 5.3118 19 8 3.0197 -9.1955 4.7029 20 7 2.5954 -8.1983 6.6389 21 6 2.5758 -9.3989 7.3007 22 1 2.7423 -10.3176 6.7577 23 6 2.3364 -9.4342 8.6689 24 7 2.3171 -10.5849 9.3032 25 14 2.0420 -7.8457 9.6068 26 1 0.5897 -7.5359 9.6121 27 1 2.5202 -8.0000 11.0042 28 1 2.7820 -6.7385 8.9499 29 6 2.8577 -5.9664 0.9157 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3632 -0.5139 -0.8901 33 1 1.6959 -2.0072 0.0005 34 1 5.2463 -0.4454 1.2484 35 1 3.7930 0.5825 1.2481 36 1 3.7933 -0.9584 2.1391 37 1 3.7919 -0.9609 -2.1394 38 1 3.7922 0.5811 -1.2503 39 1 5.2455 -0.4462 -1.2500 40 1 2.6613 -3.3139 1.1518 41 1 4.9499 -4.5350 2.6137 42 1 5.2753 -6.1855 1.9274 43 1 2.4469 -7.7118 2.7615 44 1 1.8843 -6.3518 4.6955 45 1 3.6314 -6.2113 5.0050 46 1 2.4425 -7.3735 7.1259 47 1 2.1504 -10.6095 10.2585 48 1 3.0982 -6.9555 0.5259 49 1 1.8626 -5.6281 0.6270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752671438.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:13 Heat of formation + Delta-G solvation = -109.058850 kcal Electronic energy + Delta-G solvation = -29509.520823 eV Core-core repulsion = 25278.289075 eV Total energy + Delta-G solvation = -4231.231749 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.98808 -40.73210 -40.21798 -39.42667 -36.63529 -36.17812 -35.47866 -33.77520 -33.38846 -33.16631 -29.81895 -28.69421 -28.34920 -26.68343 -26.27115 -25.17421 -23.55824 -21.97585 -21.30699 -20.76423 -20.44036 -20.12703 -19.32077 -17.96141 -17.62247 -17.03111 -16.95587 -16.61528 -16.41804 -16.22808 -16.02630 -15.96469 -15.53207 -15.33686 -14.95872 -14.86236 -14.73490 -14.43816 -14.22360 -14.03914 -13.57422 -13.45529 -13.34013 -13.32761 -13.24007 -13.07167 -13.00787 -12.90764 -12.76651 -12.55070 -12.41236 -12.35457 -11.98508 -11.52249 -11.49445 -11.47329 -11.26306 -10.57860 -10.41598 -10.30724 -10.24572 -10.16746 -9.28734 -8.40889 -6.01975 1.27809 1.30664 1.35898 1.45247 1.64808 1.87971 1.96803 2.13290 2.23507 2.76446 3.15814 3.40664 3.43501 3.55699 3.61285 3.80679 3.87838 3.95455 3.97529 4.14330 4.17333 4.44578 4.51221 4.56411 4.57773 4.61956 4.66442 4.69759 4.72854 4.75835 4.83767 4.89427 4.97875 5.08306 5.13459 5.14881 5.16001 5.18143 5.31569 5.48676 5.55527 5.93162 6.14700 6.33612 6.44939 6.49021 6.60428 6.88787 7.02591 7.22937 7.40558 7.97408 8.76763 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015276 B = 0.002005 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.461447 B =13959.911133 C =14917.879431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.513 3.487 3 O -0.578 6.578 4 N -0.717 5.717 5 C 0.167 3.833 6 C -0.156 4.156 7 C -0.147 4.147 8 C 0.523 3.477 9 O -0.562 6.562 10 N -0.691 5.691 11 C 0.123 3.877 12 H 0.092 0.908 13 C -0.141 4.141 14 C 0.061 3.939 15 H 0.096 0.904 16 N -0.677 5.677 17 C 0.063 3.937 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.592 5.592 21 C -0.328 4.328 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.255 1.255 27 H -0.277 1.277 28 H -0.231 1.231 29 C -0.131 4.131 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.415 0.585 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.415 0.585 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.348 0.652 44 H 0.083 0.917 45 H 0.107 0.893 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.098 0.902 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.397 26.160 -18.641 32.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.303 3.697 3 O -0.457 6.457 4 N -0.374 5.374 5 C 0.077 3.923 6 C -0.215 4.215 7 C -0.205 4.205 8 C 0.309 3.691 9 O -0.439 6.439 10 N -0.344 5.344 11 C 0.017 3.983 12 H 0.110 0.890 13 C -0.181 4.181 14 C -0.049 4.049 15 H 0.114 0.886 16 N -0.310 5.310 17 C -0.070 4.070 18 C 0.235 3.765 19 O -0.500 6.500 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.072 0.928 23 C -0.216 4.216 24 N -0.576 5.576 25 Si 0.786 3.214 26 H -0.179 1.179 27 H -0.203 1.203 28 H -0.154 1.154 29 C -0.169 4.169 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.128 0.872 33 H 0.253 0.747 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.252 0.748 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.169 0.831 44 H 0.101 0.899 45 H 0.125 0.875 46 H 0.225 0.775 47 H 0.088 0.912 48 H 0.117 0.883 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.472 25.834 -19.213 32.504 hybrid contribution -1.150 -0.177 1.170 1.650 sum -5.622 25.656 -18.043 31.866 Atomic orbital electron populations 1.21973 0.88079 1.06217 1.06550 1.21512 0.92030 0.82521 0.73683 1.90684 1.71585 1.32911 1.50555 1.46114 1.04891 1.10033 1.76338 1.20395 0.81748 0.91414 0.98712 1.22138 1.01863 1.02296 0.95169 1.21985 1.01899 1.01355 0.95274 1.20647 0.83776 0.86895 0.77800 1.90747 1.26160 1.82177 1.44769 1.45608 1.28993 1.07500 1.52275 1.21683 0.97371 0.80666 0.98555 0.89014 1.23564 0.97591 1.00632 0.96281 1.23257 0.97232 0.91005 0.93399 0.88625 1.60149 1.56967 1.13148 1.00695 1.21680 1.02817 0.92670 0.89806 1.21084 0.80972 0.92254 0.82193 1.90548 1.54365 1.37516 1.67550 1.42050 1.65629 1.07707 1.07956 1.19002 1.48279 0.86207 0.92290 0.92760 1.26149 0.96340 1.02196 0.96896 1.69812 1.49463 1.27682 1.10628 0.85347 0.80087 0.77777 0.78185 1.17891 1.20270 1.15439 1.23493 0.99615 0.99526 0.94287 0.86813 0.89324 0.87232 0.74687 0.91474 0.90086 0.90683 0.92345 0.90446 0.91505 0.74750 0.91566 0.89975 0.83147 0.89899 0.87524 0.77457 0.91177 0.88345 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.41 10.32 71.24 0.74 0.33 16 2 C 0.51 5.36 7.36 87.66 0.65 6.01 16 3 O -0.58 -11.30 13.29 -3.05 -0.04 -11.34 16 4 N -0.72 -5.39 4.86 -426.34 -2.07 -7.46 16 5 C 0.17 2.26 0.98 2.85 0.00 2.27 16 6 C -0.16 -2.20 8.38 71.98 0.60 -1.60 16 7 C -0.15 -2.48 7.93 71.98 0.57 -1.91 16 8 C 0.52 8.42 6.65 87.66 0.58 9.00 16 9 O -0.56 -14.06 15.69 -3.04 -0.05 -14.11 16 10 N -0.69 -7.14 4.96 -439.75 -2.18 -9.33 16 11 C 0.12 1.74 4.33 45.58 0.20 1.94 16 12 H 0.09 1.68 7.46 -2.39 -0.02 1.66 16 13 C -0.14 -2.51 7.69 31.18 0.24 -2.27 16 14 C 0.06 0.94 4.00 45.44 0.18 1.12 16 15 H 0.10 1.02 7.88 -2.39 -0.02 1.00 16 16 N -0.68 -17.15 6.18 -492.87 -3.04 -20.19 16 17 C 0.06 1.71 6.02 85.56 0.52 2.23 16 18 C 0.45 19.33 7.82 87.66 0.69 20.01 16 19 O -0.62 -33.24 15.78 -3.07 -0.05 -33.28 16 20 N -0.59 -27.03 5.09 -306.99 -1.56 -28.59 16 21 C -0.33 -18.97 10.16 84.04 0.85 -18.12 16 22 H 0.05 3.76 7.39 -2.91 -0.02 3.73 16 23 C -0.02 -0.95 5.50 84.92 0.47 -0.48 16 24 N -0.94 -55.92 13.96 21.66 0.30 -55.62 16 25 Si 0.97 37.80 27.74 68.60 1.90 39.71 16 26 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 27 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 28 H -0.23 -7.54 6.52 99.48 0.65 -6.89 16 29 C -0.13 -1.53 7.42 31.12 0.23 -1.30 16 30 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.09 0.39 8.12 -2.38 -0.02 0.37 16 32 H 0.11 -0.14 8.14 -2.38 -0.02 -0.16 16 33 H 0.42 0.57 7.24 -92.71 -0.67 -0.10 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.38 6.17 -2.39 -0.01 1.37 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.46 6.17 -2.38 -0.01 1.45 16 39 H 0.07 1.25 7.87 -2.39 -0.02 1.23 16 40 H 0.41 1.64 7.45 -92.71 -0.69 0.95 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.35 9.35 8.26 -89.69 -0.74 8.61 16 44 H 0.08 1.69 8.13 -2.39 -0.02 1.67 16 45 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.39 14.54 5.76 -92.71 -0.53 14.00 16 47 H 0.28 15.22 8.31 -92.70 -0.77 14.45 16 48 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -86.44 400.46 -1.96 -88.40 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: -1.68 Total: 34.58 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 6.51 Total: 17.23 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -8.56 Total: -121.19 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -0.14 Total: -58.73 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 1.90 Total: 39.71 kcal Total: -86.44 -1.96 -88.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752671438.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.655 kcal (2) G-P(sol) polarization free energy of solvation -86.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds