Wall clock time and date at job start Sat Apr 11 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46892 * 109.47389 * 2 1 4 4 C 1.46905 * 111.00271 * 165.60409 * 3 2 1 5 5 C 1.52999 * 109.47205 * 293.95717 * 4 3 2 6 6 N 1.46497 * 109.47024 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99690 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00554 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99614 * 180.02562 * 7 6 5 10 10 H 1.08996 * 112.90706 * 311.25374 * 9 7 6 11 11 C 1.53775 * 113.61170 * 82.50749 * 9 7 6 12 12 C 1.53782 * 87.08164 * 139.98063 * 11 9 7 13 13 C 1.53780 * 113.61075 * 180.02562 * 9 7 6 14 14 H 1.09000 * 113.61844 * 334.65166 * 13 9 7 15 15 C 1.50704 * 113.61562 * 105.47407 * 13 9 7 16 16 N 1.34773 * 120.00141 * 179.97438 * 15 13 9 17 17 O 1.21278 * 120.00072 * 359.97438 * 15 13 9 18 18 C 1.46899 * 111.00323 * 289.56441 * 3 2 1 19 19 C 1.50701 * 109.47359 * 160.41729 * 18 3 2 20 20 O 1.21289 * 120.00163 * 354.43206 * 19 18 3 21 21 N 1.34776 * 119.99902 * 174.43240 * 19 18 3 22 22 C 1.37096 * 119.99852 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00454 * 359.97438 * 22 21 19 24 24 C 1.38957 * 119.99941 * 180.02562 * 22 21 19 25 25 N 1.31407 * 119.99813 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99860 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47157 * 89.99485 * 26 24 22 28 28 H 1.48498 * 109.46761 * 209.99962 * 26 24 22 29 29 H 1.48499 * 109.46925 * 329.99448 * 26 24 22 30 30 H 1.09003 * 109.46628 * 306.24580 * 1 2 3 31 31 H 1.08991 * 109.47285 * 66.24644 * 1 2 3 32 32 H 1.09002 * 109.47095 * 186.24881 * 1 2 3 33 33 H 1.09001 * 109.47042 * 240.00214 * 2 1 3 34 34 H 1.09001 * 109.47140 * 120.00955 * 2 1 3 35 35 H 1.09000 * 109.47124 * 173.95796 * 4 3 2 36 36 H 1.08999 * 109.46492 * 53.95701 * 4 3 2 37 37 H 1.09007 * 109.46934 * 59.99649 * 5 4 3 38 38 H 1.08994 * 109.47071 * 300.00087 * 5 4 3 39 39 H 0.96997 * 120.00005 * 0.02562 * 6 5 4 40 40 H 1.09000 * 113.61370 * 254.52686 * 11 9 7 41 41 H 1.09001 * 113.61938 * 25.34993 * 11 9 7 42 42 H 1.09002 * 113.61923 * 220.02173 * 12 11 9 43 43 H 1.09001 * 113.61718 * 89.10951 * 12 11 9 44 44 H 0.96996 * 120.00207 * 179.97438 * 16 15 13 45 45 H 0.97009 * 119.99688 * 359.71991 * 16 15 13 46 46 H 1.09007 * 109.46821 * 280.41587 * 18 3 2 47 47 H 1.09000 * 109.47242 * 40.41578 * 18 3 2 48 48 H 0.96998 * 119.99884 * 359.97438 * 21 19 18 49 49 H 0.97001 * 119.99947 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4476 1.4384 0.3410 5 6 3.6438 0.9830 1.7884 6 7 5.0678 1.0358 2.1281 7 6 5.4804 0.6772 3.3601 8 8 4.6729 0.3103 4.1872 9 6 6.9453 0.7321 3.7098 10 1 7.5780 0.2524 2.9631 11 6 7.4288 2.1334 4.1186 12 6 8.2728 1.4404 5.2014 13 6 7.2514 0.2913 5.1509 14 1 6.4125 0.4207 5.8347 15 6 7.8765 -1.0768 5.2440 16 7 8.1984 -1.5902 6.4478 17 8 8.0899 -1.7158 4.2355 18 6 1.7623 2.0344 -1.2922 19 6 1.8193 3.5307 -1.1226 20 8 1.9507 4.0112 -0.0167 21 7 1.7242 4.3351 -2.1998 22 6 1.7766 5.6964 -2.0455 23 1 1.8936 6.1242 -1.0608 24 6 1.6780 6.5257 -3.1561 25 7 1.5351 6.0052 -4.3542 26 14 1.7487 8.3806 -2.9458 27 1 3.1589 8.8361 -3.0403 28 1 0.9458 9.0306 -4.0127 29 1 1.1973 8.7494 -1.6172 30 1 -0.3633 0.6076 0.8288 31 1 -0.3633 0.4139 -0.9405 32 1 -0.3633 -1.0216 0.1119 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5140 0.8899 35 1 3.8097 2.4605 0.2295 36 1 4.0052 0.7806 -0.3257 37 1 3.2816 -0.0391 1.8999 38 1 3.0862 1.6407 2.4550 39 1 5.7137 1.3296 1.4668 40 1 8.0241 2.6306 3.3528 41 1 6.6386 2.7685 4.5191 42 1 8.2850 1.9724 6.1527 43 1 9.2684 1.1543 4.8624 44 1 8.6004 -2.4709 6.5077 45 1 8.0315 -1.0773 7.2541 46 1 2.5177 1.7214 -2.0130 47 1 0.7747 1.7470 -1.6530 48 1 1.6194 3.9509 -3.0843 49 1 1.4666 6.5842 -5.1295 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753086151.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:25 Heat of formation + Delta-G solvation = -90.672082 kcal Electronic energy + Delta-G solvation = -29434.030933 eV Core-core repulsion = 25203.596495 eV Total energy + Delta-G solvation = -4230.434439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.05103 -39.32639 -38.68743 -37.36630 -36.80284 -34.67193 -33.96038 -33.83624 -31.22096 -30.96226 -29.50890 -27.31217 -27.11914 -25.75653 -24.19397 -22.84201 -21.85732 -20.84954 -20.75362 -19.58722 -19.09814 -18.13716 -17.84104 -17.62598 -16.75024 -16.31811 -16.03800 -15.51055 -15.24659 -15.10254 -14.88152 -14.76051 -14.47361 -14.12180 -13.98345 -13.79576 -13.48898 -13.36453 -13.19822 -12.97036 -12.50035 -12.26822 -12.02646 -11.88403 -11.83925 -11.65051 -11.49032 -11.35412 -11.29057 -11.12034 -10.94461 -10.83244 -10.58734 -10.38834 -10.20266 -10.13299 -10.04283 -9.77650 -9.47478 -9.01305 -8.46280 -7.95158 -7.89364 -6.40165 -3.80734 2.29980 2.57655 2.97637 3.18124 3.26647 3.27961 3.32946 3.93828 3.96087 4.02454 4.14460 4.25645 4.30907 4.45058 4.77075 4.88897 5.01030 5.07009 5.17038 5.21169 5.25594 5.28292 5.29406 5.35507 5.47516 5.49937 5.56577 5.57661 5.70839 5.73461 5.80810 5.94637 6.00834 6.11753 6.14943 6.17184 6.30055 6.40256 6.41837 6.45019 6.96499 7.22036 7.33494 7.47546 7.56476 7.93045 8.08321 8.18902 8.64376 9.20357 9.57113 10.09515 10.77693 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013140 B = 0.002169 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.329254 B =12904.256678 C =14510.601104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 N -0.510 5.510 4 C 0.050 3.950 5 C 0.124 3.876 6 N -0.723 5.723 7 C 0.526 3.474 8 O -0.544 6.544 9 C -0.116 4.116 10 H 0.126 0.874 11 C -0.123 4.123 12 C -0.122 4.122 13 C -0.118 4.118 14 H 0.129 0.871 15 C 0.530 3.470 16 N -0.854 5.854 17 O -0.543 6.543 18 C 0.045 3.955 19 C 0.444 3.556 20 O -0.574 6.574 21 N -0.568 5.568 22 C -0.297 4.297 23 H 0.102 0.898 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.929 3.071 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.031 0.969 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.401 0.599 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.400 0.600 45 H 0.402 0.598 46 H 0.049 0.951 47 H 0.092 0.908 48 H 0.391 0.609 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.470 -13.532 15.398 23.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 N -0.235 5.235 4 C -0.078 4.078 5 C 0.001 3.999 6 N -0.374 5.374 7 C 0.312 3.688 8 O -0.421 6.421 9 C -0.138 4.138 10 H 0.144 0.856 11 C -0.161 4.161 12 C -0.160 4.160 13 C -0.140 4.140 14 H 0.147 0.853 15 C 0.315 3.685 16 N -0.417 5.417 17 O -0.420 6.420 18 C -0.087 4.087 19 C 0.229 3.771 20 O -0.457 6.457 21 N -0.205 5.205 22 C -0.426 4.426 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.756 3.244 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.235 0.765 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.230 0.770 45 H 0.230 0.770 46 H 0.067 0.933 47 H 0.110 0.890 48 H 0.224 0.776 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.717 -13.381 16.150 24.024 hybrid contribution 0.682 0.188 -1.184 1.379 sum 12.400 -13.193 14.966 23.490 Atomic orbital electron populations 1.21796 0.94806 1.01195 1.02812 1.22212 0.96489 0.88965 1.00602 1.61414 1.15768 1.15447 1.30852 1.22200 0.88926 1.02530 0.94178 1.21341 0.80518 1.01583 0.96478 1.45897 1.09583 1.67887 1.14025 1.20291 0.90308 0.76516 0.81723 1.90679 1.55654 1.47127 1.48635 1.22682 0.94288 0.99133 0.97649 0.85613 1.22833 0.99836 0.94490 0.98960 1.22823 0.97571 0.95099 1.00478 1.22712 1.00514 0.91807 0.98945 0.85342 1.20468 0.77010 0.87835 0.83202 1.43845 1.66610 1.22528 1.08755 1.90737 1.53983 1.61652 1.35590 1.21924 1.01992 0.95025 0.89731 1.19790 0.84434 0.87341 0.85562 1.90523 1.54192 1.76055 1.24931 1.41885 1.64191 1.06529 1.07888 1.19680 1.46773 0.80839 0.95345 0.87977 1.25250 0.97460 1.00639 0.94689 1.69610 1.50256 1.36310 0.98271 0.85875 0.78186 0.82239 0.78095 1.20478 1.20971 1.19434 0.91447 0.92683 0.92596 0.95076 0.90601 0.88911 0.95059 0.91769 0.90091 0.76520 0.89667 0.88887 0.89860 0.89300 0.76955 0.76951 0.93331 0.88975 0.77583 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.84 37.16 0.37 -1.48 16 2 C 0.05 0.59 5.55 -3.83 -0.02 0.57 16 3 N -0.51 -8.32 4.00 -236.07 -0.95 -9.27 16 4 C 0.05 0.75 4.72 -3.82 -0.02 0.73 16 5 C 0.12 1.78 5.63 -4.04 -0.02 1.75 16 6 N -0.72 -8.88 5.56 -60.30 -0.33 -9.21 16 7 C 0.53 6.88 7.35 -10.98 -0.08 6.80 16 8 O -0.54 -8.99 15.90 5.56 0.09 -8.91 16 9 C -0.12 -1.12 3.47 -90.96 -0.32 -1.44 16 10 H 0.13 1.22 7.43 -51.93 -0.39 0.83 16 11 C -0.12 -0.90 7.63 -25.92 -0.20 -1.10 16 12 C -0.12 -0.72 7.63 -25.90 -0.20 -0.91 16 13 C -0.12 -1.00 3.48 -90.94 -0.32 -1.32 16 14 H 0.13 1.13 7.43 -51.93 -0.39 0.74 16 15 C 0.53 5.12 7.63 -10.99 -0.08 5.03 16 16 N -0.85 -4.75 8.87 31.22 0.28 -4.47 16 17 O -0.54 -7.54 16.74 5.56 0.09 -7.45 16 18 C 0.04 0.78 5.32 -4.98 -0.03 0.76 16 19 C 0.44 10.32 7.33 -10.98 -0.08 10.24 16 20 O -0.57 -15.32 15.08 5.55 0.08 -15.24 16 21 N -0.57 -14.22 5.29 -10.96 -0.06 -14.28 16 22 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 23 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 24 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 25 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 26 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.69 6.67 -51.93 -0.35 0.34 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.03 0.38 8.07 -51.93 -0.42 -0.04 16 34 H 0.08 0.95 5.97 -51.93 -0.31 0.64 16 35 H 0.09 1.62 6.88 -51.93 -0.36 1.27 16 36 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 37 H 0.06 0.91 6.30 -51.93 -0.33 0.58 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.40 3.97 8.47 -40.82 -0.35 3.62 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 44 H 0.40 1.87 8.93 -40.82 -0.36 1.51 16 45 H 0.40 1.06 8.83 -40.82 -0.36 0.69 16 46 H 0.05 0.78 8.00 -51.93 -0.42 0.36 16 47 H 0.09 1.49 6.25 -51.93 -0.32 1.17 16 48 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 49 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 403.74 15.07 6.08 6.08 Total: -1.00 -36.37 403.74 -7.80 -44.17 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -7.55 Total: 14.59 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: -1.24 Total: 11.76 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.34 Total: -60.96 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: 0.27 Total: -31.59 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.37 -7.80 -44.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753086151.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.505 kcal (2) G-P(sol) polarization free energy of solvation -36.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds