Wall clock time and date at job start Sat Apr 11 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.52999 * 109.47070 * 90.00054 * 3 2 1 5 5 N 1.46896 * 109.47356 * 180.02562 * 4 3 2 6 6 C 1.46903 * 111.00045 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46971 * 180.02562 * 6 5 4 8 8 O 1.21287 * 120.00405 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00009 * 179.97438 * 7 6 5 10 10 C 1.37094 * 119.99975 * 179.97438 * 9 7 6 11 11 H 1.07994 * 120.00191 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99845 * 180.02562 * 10 9 7 13 13 N 1.31411 * 120.00143 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99980 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47292 * 90.00000 * 14 12 10 16 16 H 1.48504 * 109.47163 * 210.00335 * 14 12 10 17 17 H 1.48501 * 109.47137 * 329.99893 * 14 12 10 18 18 C 1.34777 * 119.99873 * 180.28195 * 2 1 3 19 19 O 1.21283 * 120.00222 * 179.97438 * 18 2 1 20 20 C 1.50699 * 119.99772 * 359.97438 * 18 2 1 21 21 C 1.53004 * 109.46843 * 180.02562 * 20 18 2 22 22 H 1.08996 * 110.43495 * 52.46052 * 21 20 18 23 23 C 1.54635 * 110.48500 * 175.00292 * 21 20 18 24 24 C 1.54475 * 101.76497 * 93.87902 * 23 21 20 25 25 N 1.46765 * 105.47796 * 25.41451 * 24 23 21 26 26 C 1.46498 * 124.34982 * 162.98374 * 25 24 23 27 27 C 1.34424 * 111.29822 * 342.98335 * 25 24 23 28 28 O 1.21273 * 124.94054 * 180.44265 * 27 25 24 29 29 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 30 30 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 31 31 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 32 32 H 1.08993 * 109.47575 * 210.00600 * 3 2 1 33 33 H 1.09001 * 109.46870 * 330.00556 * 3 2 1 34 34 H 1.09002 * 109.47116 * 300.00653 * 4 3 2 35 35 H 1.09001 * 109.47317 * 59.99875 * 4 3 2 36 36 H 1.00894 * 111.00108 * 56.04853 * 5 4 3 37 37 H 1.09003 * 109.46885 * 299.99764 * 6 5 4 38 38 H 1.08998 * 109.47252 * 59.99544 * 6 5 4 39 39 H 0.96999 * 119.99768 * 359.97438 * 9 7 6 40 40 H 0.96999 * 120.00372 * 179.97438 * 13 12 10 41 41 H 1.08999 * 109.47685 * 300.00183 * 20 18 2 42 42 H 1.08997 * 109.47517 * 60.00530 * 20 18 2 43 43 H 1.09002 * 110.96619 * 211.99715 * 23 21 20 44 44 H 1.08992 * 110.96583 * 335.71908 * 23 21 20 45 45 H 1.09005 * 110.24634 * 144.41484 * 24 23 21 46 46 H 1.09000 * 110.24434 * 266.32311 * 24 23 21 47 47 H 1.09003 * 109.47123 * 90.00325 * 26 25 24 48 48 H 1.09003 * 109.46806 * 210.00103 * 26 25 24 49 49 H 1.08995 * 109.47256 * 330.00093 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 7 3.1866 2.9828 1.4426 6 6 3.4504 3.4383 2.8140 7 6 4.2025 4.7435 2.7739 8 8 4.4910 5.2448 1.7077 9 7 4.5547 5.3540 3.9227 10 6 5.2395 6.5412 3.8862 11 1 5.4963 6.9874 2.9369 12 6 5.6030 7.1702 5.0706 13 7 6.2598 8.3079 5.0356 14 14 5.1594 6.3980 6.7126 15 1 6.2549 5.4943 7.1467 16 1 4.9678 7.4661 7.7264 17 1 3.9028 5.6196 6.5703 18 6 2.1389 -1.1672 -0.0057 19 8 3.3517 -1.1673 -0.0062 20 6 1.3853 -2.4722 -0.0116 21 6 2.3796 -3.6352 -0.0168 22 1 3.0999 -3.5237 0.7936 23 6 1.6344 -4.9848 0.1034 24 6 1.4721 -5.3880 -1.3790 25 7 2.5637 -4.7126 -2.0904 26 6 3.0229 -5.0736 -3.4339 27 6 3.0880 -3.7201 -1.3508 28 8 3.9963 -2.9974 -1.7021 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 0.8925 -0.5094 31 1 -0.3633 -0.8875 -0.5181 32 1 3.1499 1.1384 -0.5139 33 1 1.6085 2.0284 -0.5138 34 1 1.5002 1.8406 1.9564 35 1 3.0417 0.9507 1.9564 36 1 2.6904 3.6864 0.9167 37 1 2.5050 3.5801 3.3379 38 1 4.0468 2.6907 3.3369 39 1 4.3237 4.9534 4.7754 40 1 6.5133 8.7473 5.8624 41 1 0.7590 -2.5342 0.8783 42 1 0.7584 -2.5259 -0.9016 43 1 2.2364 -5.7160 0.6429 44 1 0.6636 -4.8531 0.5810 45 1 1.5627 -6.4688 -1.4880 46 1 0.5074 -5.0508 -1.7581 47 1 2.4628 -4.5032 -4.1748 48 1 4.0850 -4.8471 -3.5279 49 1 2.8627 -6.1391 -3.5985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753201185.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:30 Heat of formation + Delta-G solvation = -84.272050 kcal Electronic energy + Delta-G solvation = -29230.689831 eV Core-core repulsion = 25000.532919 eV Total energy + Delta-G solvation = -4230.156912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.11902 -39.69815 -38.42469 -36.66755 -36.40485 -34.98037 -34.14618 -33.81694 -31.63181 -30.78336 -29.40879 -27.32917 -27.11135 -26.53650 -25.33265 -23.65540 -22.31241 -21.75506 -19.97873 -19.40182 -19.17317 -18.28527 -17.53718 -16.79981 -16.75653 -16.42746 -16.07553 -15.88583 -15.54050 -15.33751 -14.84999 -14.37129 -14.32429 -13.99603 -13.85201 -13.71243 -13.49093 -13.37034 -13.19800 -13.05044 -13.00855 -12.76773 -12.71590 -12.60842 -12.42593 -12.33673 -12.15746 -11.85777 -11.71185 -11.59688 -11.37900 -11.16559 -10.97723 -10.56276 -9.97916 -9.93702 -9.75859 -9.53193 -9.07288 -8.89671 -8.52003 -8.15081 -8.08939 -6.27074 -3.78267 2.36591 2.52203 2.65133 2.73122 3.05303 3.10491 3.17784 3.78893 3.83559 3.93782 4.13543 4.18355 4.24444 4.33260 4.53445 4.61724 4.75312 4.77847 4.87932 4.91879 4.95044 4.99398 5.00435 5.06226 5.11478 5.20556 5.26530 5.28245 5.31181 5.34366 5.37030 5.44863 5.57599 5.65380 5.82695 5.88604 5.96049 6.04599 6.15748 6.32851 6.76694 7.11788 7.17329 7.61662 7.63482 7.99138 8.08613 8.18950 8.64248 8.99259 9.46736 9.87448 10.86137 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022816 B = 0.001723 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.909299 B =16242.816115 C =16247.386326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.621 5.621 3 C 0.118 3.882 4 C 0.049 3.951 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.451 3.549 8 O -0.563 6.563 9 N -0.591 5.591 10 C -0.304 4.304 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.880 3.120 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.499 3.501 19 O -0.498 6.498 20 C -0.121 4.121 21 C -0.110 4.110 22 H 0.115 0.885 23 C -0.130 4.130 24 C 0.103 3.897 25 N -0.634 5.634 26 C 0.097 3.903 27 C 0.515 3.485 28 O -0.493 6.493 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.350 0.650 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.053 0.947 48 H 0.074 0.926 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.127 -32.421 -9.629 39.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.356 5.356 3 C -0.005 4.005 4 C -0.081 4.081 5 N -0.299 5.299 6 C -0.082 4.082 7 C 0.236 3.764 8 O -0.445 6.445 9 N -0.231 5.231 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 C 0.286 3.714 19 O -0.371 6.371 20 C -0.162 4.162 21 C -0.132 4.132 22 H 0.133 0.867 23 C -0.168 4.168 24 C -0.020 4.020 25 N -0.371 5.371 26 C -0.045 4.045 27 C 0.301 3.699 28 O -0.365 6.365 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.043 0.957 35 H 0.092 0.908 36 H 0.169 0.831 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.203 0.797 40 H 0.083 0.917 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.093 0.907 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.995 -31.807 -10.599 38.051 hybrid contribution -1.439 -0.208 1.732 2.261 sum -19.434 -32.015 -8.868 38.487 Atomic orbital electron populations 1.21818 0.79731 1.03172 1.01858 1.47808 1.06768 1.06213 1.74842 1.21406 0.98481 0.83704 0.96904 1.22257 0.95980 0.93011 0.96887 1.59897 1.51492 1.05044 1.13420 1.21683 0.99075 0.97006 0.90417 1.19708 0.85123 0.86770 0.84757 1.90565 1.57966 1.66643 1.29306 1.42201 1.52310 1.22387 1.06207 1.19442 1.30692 0.96356 0.96810 0.86267 1.25037 0.97140 0.96002 0.98021 1.69623 1.38334 1.15991 1.28271 0.86663 0.78898 0.79568 0.84195 1.19581 1.20220 1.19578 1.20568 0.88455 0.85159 0.77231 1.90875 1.13148 1.86701 1.46347 1.21569 0.98275 0.91576 1.04743 1.21755 0.98517 0.94594 0.98313 0.86687 1.22708 1.02067 0.96152 0.95861 1.22058 0.90213 0.97832 0.91915 1.48233 1.36245 1.35370 1.17246 1.21506 1.00888 1.00247 0.81815 1.20738 0.82972 0.79722 0.86498 1.90820 1.27874 1.42847 1.74910 0.92522 0.90865 0.91240 0.88553 0.90621 0.95711 0.90774 0.83109 0.93848 0.89435 0.79706 0.91653 0.87685 0.88881 0.89477 0.88830 0.90404 0.91239 0.92795 0.90692 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 10.29 59.85 0.62 1.04 16 2 N -0.62 -6.16 2.87 -181.57 -0.52 -6.68 16 3 C 0.12 1.43 5.71 -4.04 -0.02 1.41 16 4 C 0.05 0.65 6.01 -3.83 -0.02 0.63 16 5 N -0.67 -11.18 6.13 -115.06 -0.70 -11.88 16 6 C 0.05 0.91 6.17 -4.98 -0.03 0.87 16 7 C 0.45 10.70 7.82 -10.98 -0.09 10.62 16 8 O -0.56 -15.73 15.78 5.55 0.09 -15.64 16 9 N -0.59 -14.60 5.09 -10.97 -0.06 -14.66 16 10 C -0.30 -8.85 10.16 -14.93 -0.15 -9.01 16 11 H 0.12 3.95 7.39 -52.49 -0.39 3.57 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 13 N -0.88 -26.27 13.96 55.50 0.77 -25.50 16 14 Si 0.88 19.82 27.74 -169.99 -4.71 15.10 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 18 C 0.50 5.78 7.48 -10.99 -0.08 5.70 16 19 O -0.50 -8.39 13.56 -15.02 -0.20 -8.59 16 20 C -0.12 -0.80 3.66 -27.88 -0.10 -0.90 16 21 C -0.11 -0.85 2.54 -90.62 -0.23 -1.08 16 22 H 0.12 1.07 7.90 -51.93 -0.41 0.66 16 23 C -0.13 -0.43 6.71 -25.10 -0.17 -0.60 16 24 C 0.10 0.37 7.35 -3.12 -0.02 0.35 16 25 N -0.63 -4.84 3.33 -180.29 -0.60 -5.44 16 26 C 0.10 0.61 10.96 59.85 0.66 1.26 16 27 C 0.51 5.84 7.02 -10.86 -0.08 5.76 16 28 O -0.49 -8.34 15.78 -15.01 -0.24 -8.58 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.35 7.89 -51.93 -0.41 -0.06 16 31 H 0.07 0.23 6.44 -51.93 -0.33 -0.10 16 32 H 0.10 1.48 7.42 -51.93 -0.39 1.10 16 33 H 0.08 0.77 7.89 -51.93 -0.41 0.36 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.35 5.79 8.43 -39.30 -0.33 5.46 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.37 8.02 5.76 -40.82 -0.24 7.79 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.10 0.38 8.07 -51.93 -0.42 -0.04 16 42 H 0.09 0.47 7.38 -51.93 -0.38 0.09 16 43 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.09 0.09 7.87 -51.93 -0.41 -0.32 16 45 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 47 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.59 7.93 -51.93 -0.41 0.18 16 49 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 LS Contribution 402.45 15.07 6.06 6.06 Total: -1.00 -40.95 402.45 -7.85 -48.80 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -7.92 Total: 9.90 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: 0.18 Total: 17.10 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -1.11 Total: -64.15 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.35 Total: -32.81 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.71 Total: 15.10 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -40.95 -7.85 -48.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753201185.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.467 kcal (2) G-P(sol) polarization free energy of solvation -40.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds