Wall clock time and date at job start Sat Apr 11 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.53009 * 109.47238 * 270.00499 * 3 2 1 5 5 N 1.46900 * 109.47216 * 179.97438 * 4 3 2 6 6 C 1.46894 * 111.00238 * 179.97438 * 5 4 3 7 7 C 1.50690 * 109.47563 * 179.97438 * 6 5 4 8 8 O 1.21299 * 119.99933 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00286 * 180.02562 * 7 6 5 10 10 C 1.37095 * 120.00093 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.38946 * 120.00433 * 179.97438 * 10 9 7 13 13 N 1.31417 * 119.99699 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00488 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47021 * 60.00337 * 14 12 10 16 16 H 1.48496 * 109.46962 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47193 * 299.99927 * 14 12 10 18 18 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 19 19 O 1.21283 * 120.00463 * 179.97438 * 18 2 1 20 20 C 1.50700 * 119.99675 * 359.72090 * 18 2 1 21 21 C 1.53004 * 109.47208 * 180.27843 * 20 18 2 22 22 H 1.09003 * 110.43143 * 307.54066 * 21 20 18 23 23 C 1.54624 * 110.48742 * 184.99722 * 21 20 18 24 24 C 1.54477 * 101.76716 * 216.52397 * 23 21 20 25 25 N 1.46765 * 105.47350 * 25.41372 * 24 23 21 26 26 C 1.46494 * 124.35005 * 162.98203 * 25 24 23 27 27 C 1.34419 * 111.30125 * 342.99060 * 25 24 23 28 28 O 1.21279 * 124.94429 * 180.44238 * 27 25 24 29 29 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 30 30 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 31 31 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 32 32 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 33 33 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 34 34 H 1.09000 * 109.46757 * 299.99562 * 4 3 2 35 35 H 1.08993 * 109.47081 * 59.99692 * 4 3 2 36 36 H 1.00903 * 110.99770 * 56.04511 * 5 4 3 37 37 H 1.09004 * 109.47183 * 300.00490 * 6 5 4 38 38 H 1.08998 * 109.46858 * 59.99804 * 6 5 4 39 39 H 0.96993 * 119.99844 * 0.02562 * 9 7 6 40 40 H 0.96999 * 119.99776 * 180.02562 * 13 12 10 41 41 H 1.09009 * 109.47352 * 300.27556 * 20 18 2 42 42 H 1.08998 * 109.47585 * 60.27844 * 20 18 2 43 43 H 1.09004 * 110.97039 * 334.64548 * 23 21 20 44 44 H 1.09000 * 110.96678 * 98.37025 * 23 21 20 45 45 H 1.09000 * 110.25126 * 144.41864 * 24 23 21 46 46 H 1.09006 * 110.24890 * 266.33151 * 24 23 21 47 47 H 1.09003 * 109.47165 * 90.00238 * 26 25 24 48 48 H 1.09007 * 109.47357 * 210.00807 * 26 25 24 49 49 H 1.09002 * 109.47339 * 330.00336 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 7 3.1864 2.9829 -1.4426 6 6 3.4501 3.4387 -2.8139 7 6 4.2022 4.7438 -2.7738 8 8 4.4907 5.2450 -1.7075 9 7 4.5543 5.3544 -3.9226 10 6 5.2390 6.5415 -3.8860 11 1 5.4959 6.9878 -2.9366 12 6 5.6025 7.1708 -5.0703 13 7 5.2895 6.6281 -6.2255 14 14 6.5348 8.7887 -5.0205 15 1 7.8227 8.5961 -4.3067 16 1 6.8008 9.2496 -6.4068 17 1 5.7216 9.8069 -4.3083 18 6 2.1389 -1.1672 -0.0005 19 8 3.3517 -1.1672 -0.0010 20 6 1.3854 -2.4723 0.0053 21 6 2.3797 -3.6352 0.0104 22 1 3.1000 -3.5236 -0.8001 23 6 1.6346 -4.9848 -0.1098 24 6 2.4851 -5.8965 0.8022 25 7 3.1281 -4.9958 1.7662 26 6 3.7352 -5.4310 3.0264 27 6 3.0882 -3.7201 1.3444 28 8 3.5533 -2.7749 1.9453 29 1 -0.3633 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6084 2.0283 0.5138 33 1 3.1500 1.1384 0.5137 34 1 3.0415 0.9508 -1.9564 35 1 1.5000 1.8408 -1.9563 36 1 4.0439 2.9057 -0.9164 37 1 4.0465 2.6911 -3.3369 38 1 2.5047 3.5804 -3.3377 39 1 4.3233 4.9538 -4.7752 40 1 5.5436 7.0672 -7.0523 41 1 0.7588 -2.5261 0.8956 42 1 0.7587 -2.5340 -0.8844 43 1 0.6141 -4.9016 0.2642 44 1 1.6428 -5.3445 -1.1387 45 1 1.8470 -6.6115 1.3215 46 1 3.2381 -6.4214 0.2143 47 1 4.7858 -5.6692 2.8604 48 1 3.6558 -4.6316 3.7632 49 1 3.2156 -6.3162 3.3934 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753201186.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:32 Heat of formation + Delta-G solvation = -93.205220 kcal Electronic energy + Delta-G solvation = -29127.754787 eV Core-core repulsion = 24897.210503 eV Total energy + Delta-G solvation = -4230.544284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04407 -39.64066 -38.21525 -36.61958 -36.28891 -34.86818 -34.18595 -33.74801 -31.20632 -30.73352 -29.35797 -27.33405 -26.97000 -26.35221 -25.15289 -23.74814 -22.24201 -21.79036 -19.94339 -19.26954 -18.93399 -17.83327 -17.50426 -17.07862 -16.69088 -16.35798 -16.10670 -15.64193 -15.42615 -15.34879 -14.54762 -14.33327 -14.17353 -14.14935 -13.89819 -13.67203 -13.35052 -13.24627 -13.12398 -13.07697 -12.97440 -12.71426 -12.65209 -12.48029 -12.23361 -12.14672 -11.88782 -11.83550 -11.45789 -11.42676 -11.40358 -11.03150 -10.88118 -10.40261 -10.16710 -9.96213 -9.71117 -9.45126 -9.05829 -8.78738 -8.38318 -8.00475 -7.90623 -6.36828 -3.77483 2.40143 2.61453 2.66764 2.83271 3.24243 3.29165 3.34183 3.86572 3.94541 3.96840 4.15070 4.20503 4.35273 4.52433 4.67300 4.74143 4.77170 4.82764 4.93450 4.97808 5.06528 5.06679 5.11437 5.12690 5.26495 5.26855 5.30048 5.32057 5.37102 5.38718 5.43026 5.60867 5.61965 5.83735 5.93824 6.02152 6.07342 6.16474 6.30261 6.42542 6.77317 7.26607 7.27594 7.59826 7.72195 7.99464 8.11351 8.17072 8.66795 9.22820 9.59603 10.11518 10.80963 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.001650 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.106314 B =16966.902495 C =17227.550634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.620 5.620 3 C 0.119 3.881 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.053 3.947 7 C 0.442 3.558 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.932 3.068 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.509 3.491 19 O -0.511 6.511 20 C -0.121 4.121 21 C -0.109 4.109 22 H 0.117 0.883 23 C -0.129 4.129 24 C 0.104 3.896 25 N -0.633 5.633 26 C 0.098 3.902 27 C 0.517 3.483 28 O -0.499 6.499 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.351 0.649 37 H 0.043 0.957 38 H 0.085 0.915 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.054 0.946 48 H 0.074 0.926 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.408 -30.174 10.870 35.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.355 5.355 3 C -0.004 4.004 4 C -0.083 4.083 5 N -0.300 5.300 6 C -0.080 4.080 7 C 0.227 3.773 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.759 3.241 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.296 3.704 19 O -0.384 6.384 20 C -0.161 4.161 21 C -0.131 4.131 22 H 0.135 0.865 23 C -0.167 4.167 24 C -0.019 4.019 25 N -0.370 5.370 26 C -0.044 4.044 27 C 0.303 3.697 28 O -0.371 6.371 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.171 0.829 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.121 0.879 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.774 -28.880 11.879 34.130 hybrid contribution 0.859 -0.182 -0.974 1.311 sum -12.915 -29.062 10.905 33.620 Atomic orbital electron populations 1.21807 0.79633 1.03290 1.01821 1.47781 1.06865 1.06132 1.74696 1.21375 0.98352 0.83831 0.96876 1.22250 0.98841 0.90450 0.96785 1.60032 1.28457 1.27949 1.13584 1.21647 1.00150 0.96059 0.90154 1.19812 0.85123 0.87320 0.85033 1.90524 1.59209 1.67242 1.29653 1.41848 1.50136 1.21377 1.06754 1.19667 1.30955 0.97718 0.94530 0.87963 1.25260 0.98213 0.99872 0.94636 1.69611 1.47188 1.40184 0.97462 0.85907 0.79830 0.81399 0.77008 1.19931 1.21011 1.19901 1.20450 0.88261 0.85103 0.76614 1.90771 1.13565 1.86897 1.47197 1.21555 0.98299 0.91657 1.04617 1.21759 0.98450 0.94715 0.98194 0.86485 1.22710 0.99280 0.93579 1.01160 1.22051 0.96123 0.92884 0.90876 1.48190 1.59311 1.08253 1.21244 1.21505 0.97644 1.00603 0.84678 1.20727 0.79583 0.82294 0.87108 1.90799 1.46388 1.39460 1.60486 0.92625 0.90594 0.91225 0.89564 0.89726 0.95216 0.91279 0.82938 0.93868 0.89674 0.77468 0.91878 0.88820 0.87880 0.89674 0.88786 0.90381 0.91097 0.92730 0.90747 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.24 59.84 0.61 1.12 16 2 N -0.62 -6.73 2.87 -181.57 -0.52 -7.25 16 3 C 0.12 1.54 5.67 -4.04 -0.02 1.52 16 4 C 0.05 0.67 6.01 -3.82 -0.02 0.65 16 5 N -0.67 -11.84 6.13 -115.06 -0.70 -12.55 16 6 C 0.05 1.00 6.17 -4.98 -0.03 0.97 16 7 C 0.44 10.97 7.82 -10.99 -0.09 10.88 16 8 O -0.58 -16.53 15.78 5.54 0.09 -16.44 16 9 N -0.56 -14.86 5.29 -10.97 -0.06 -14.92 16 10 C -0.30 -8.61 9.68 -14.94 -0.14 -8.75 16 11 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -25.11 13.05 55.50 0.72 -24.39 16 14 Si 0.93 21.59 29.55 -169.99 -5.02 16.56 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 C 0.51 6.25 7.14 -10.98 -0.08 6.17 16 19 O -0.51 -8.68 13.62 -15.86 -0.22 -8.90 16 20 C -0.12 -0.89 3.64 -27.88 -0.10 -1.00 16 21 C -0.11 -0.86 2.54 -90.63 -0.23 -1.09 16 22 H 0.12 1.05 7.90 -51.93 -0.41 0.64 16 23 C -0.13 -0.45 6.70 -25.10 -0.17 -0.62 16 24 C 0.10 0.43 7.35 -3.12 -0.02 0.40 16 25 N -0.63 -5.06 3.33 -180.28 -0.60 -5.66 16 26 C 0.10 0.63 10.96 59.84 0.66 1.29 16 27 C 0.52 5.89 7.29 -10.86 -0.08 5.81 16 28 O -0.50 -8.24 15.20 -15.86 -0.24 -8.48 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 31 H 0.07 0.28 6.45 -51.93 -0.33 -0.05 16 32 H 0.09 1.04 8.07 -51.93 -0.42 0.62 16 33 H 0.08 1.30 7.42 -51.93 -0.39 0.92 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.35 6.61 8.43 -39.29 -0.33 6.28 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.39 9.84 7.90 -40.82 -0.32 9.52 16 40 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.09 0.59 8.09 -51.92 -0.42 0.17 16 42 H 0.10 0.44 7.41 -51.93 -0.38 0.06 16 43 H 0.08 0.19 7.91 -51.93 -0.41 -0.23 16 44 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.07 0.58 7.93 -51.92 -0.41 0.17 16 49 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 405.30 15.07 6.11 6.11 Total: -1.00 -39.13 405.30 -8.25 -47.38 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -7.99 Total: 10.69 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 0.19 Total: 17.86 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -1.16 Total: -64.77 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.37 Total: -33.82 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -39.13 -8.25 -47.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753201186.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.827 kcal (2) G-P(sol) polarization free energy of solvation -39.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds