Wall clock time and date at job start Sat Apr 11 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.53009 * 109.47238 * 270.00499 * 3 2 1 5 5 N 1.46900 * 109.47216 * 179.97438 * 4 3 2 6 6 C 1.46894 * 111.00238 * 179.97438 * 5 4 3 7 7 C 1.50690 * 109.47563 * 179.97438 * 6 5 4 8 8 O 1.21299 * 119.99933 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00286 * 180.02562 * 7 6 5 10 10 C 1.37095 * 120.00093 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.38946 * 120.00433 * 179.97438 * 10 9 7 13 13 N 1.31417 * 119.99699 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00488 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47021 * 60.00337 * 14 12 10 16 16 H 1.48496 * 109.46962 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47193 * 299.99927 * 14 12 10 18 18 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 19 19 O 1.21283 * 120.00463 * 179.97438 * 18 2 1 20 20 C 1.50700 * 119.99675 * 359.72090 * 18 2 1 21 21 C 1.53004 * 109.47208 * 180.27843 * 20 18 2 22 22 H 1.09003 * 110.43143 * 307.54066 * 21 20 18 23 23 C 1.54624 * 110.48742 * 184.99722 * 21 20 18 24 24 C 1.54477 * 101.76716 * 216.52397 * 23 21 20 25 25 N 1.46765 * 105.47350 * 25.41372 * 24 23 21 26 26 C 1.46494 * 124.35005 * 162.98203 * 25 24 23 27 27 C 1.34419 * 111.30125 * 342.99060 * 25 24 23 28 28 O 1.21279 * 124.94429 * 180.44238 * 27 25 24 29 29 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 30 30 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 31 31 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 32 32 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 33 33 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 34 34 H 1.09000 * 109.46757 * 299.99562 * 4 3 2 35 35 H 1.08993 * 109.47081 * 59.99692 * 4 3 2 36 36 H 1.00903 * 110.99770 * 56.04511 * 5 4 3 37 37 H 1.09004 * 109.47183 * 300.00490 * 6 5 4 38 38 H 1.08998 * 109.46858 * 59.99804 * 6 5 4 39 39 H 0.96993 * 119.99844 * 0.02562 * 9 7 6 40 40 H 0.96999 * 119.99776 * 180.02562 * 13 12 10 41 41 H 1.09009 * 109.47352 * 300.27556 * 20 18 2 42 42 H 1.08998 * 109.47585 * 60.27844 * 20 18 2 43 43 H 1.09004 * 110.97039 * 334.64548 * 23 21 20 44 44 H 1.09000 * 110.96678 * 98.37025 * 23 21 20 45 45 H 1.09000 * 110.25126 * 144.41864 * 24 23 21 46 46 H 1.09006 * 110.24890 * 266.33151 * 24 23 21 47 47 H 1.09003 * 109.47165 * 90.00238 * 26 25 24 48 48 H 1.09007 * 109.47357 * 210.00807 * 26 25 24 49 49 H 1.09002 * 109.47339 * 330.00336 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 7 3.1864 2.9829 -1.4426 6 6 3.4501 3.4387 -2.8139 7 6 4.2022 4.7438 -2.7738 8 8 4.4907 5.2450 -1.7075 9 7 4.5543 5.3544 -3.9226 10 6 5.2390 6.5415 -3.8860 11 1 5.4959 6.9878 -2.9366 12 6 5.6025 7.1708 -5.0703 13 7 5.2895 6.6281 -6.2255 14 14 6.5348 8.7887 -5.0205 15 1 7.8227 8.5961 -4.3067 16 1 6.8008 9.2496 -6.4068 17 1 5.7216 9.8069 -4.3083 18 6 2.1389 -1.1672 -0.0005 19 8 3.3517 -1.1672 -0.0010 20 6 1.3854 -2.4723 0.0053 21 6 2.3797 -3.6352 0.0104 22 1 3.1000 -3.5236 -0.8001 23 6 1.6346 -4.9848 -0.1098 24 6 2.4851 -5.8965 0.8022 25 7 3.1281 -4.9958 1.7662 26 6 3.7352 -5.4310 3.0264 27 6 3.0882 -3.7201 1.3444 28 8 3.5533 -2.7749 1.9453 29 1 -0.3633 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6084 2.0283 0.5138 33 1 3.1500 1.1384 0.5137 34 1 3.0415 0.9508 -1.9564 35 1 1.5000 1.8408 -1.9563 36 1 4.0439 2.9057 -0.9164 37 1 4.0465 2.6911 -3.3369 38 1 2.5047 3.5804 -3.3377 39 1 4.3233 4.9538 -4.7752 40 1 5.5436 7.0672 -7.0523 41 1 0.7588 -2.5261 0.8956 42 1 0.7587 -2.5340 -0.8844 43 1 0.6141 -4.9016 0.2642 44 1 1.6428 -5.3445 -1.1387 45 1 1.8470 -6.6115 1.3215 46 1 3.2381 -6.4214 0.2143 47 1 4.7858 -5.6692 2.8604 48 1 3.6558 -4.6316 3.7632 49 1 3.2156 -6.3162 3.3934 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753201186.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:31 Heat of formation + Delta-G solvation = -123.921340 kcal Electronic energy + Delta-G solvation = -29129.086738 eV Core-core repulsion = 24897.210503 eV Total energy + Delta-G solvation = -4231.876235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.73909 -40.52163 -40.14612 -37.49174 -37.39504 -36.20770 -35.70044 -34.77641 -33.30175 -31.61099 -30.25615 -28.11757 -27.88525 -27.32608 -26.34278 -25.19485 -23.25391 -22.38070 -21.20374 -20.62954 -19.96735 -19.74970 -18.19496 -17.97573 -17.72742 -17.41284 -17.13398 -17.02543 -16.52749 -16.35000 -16.11329 -15.89139 -15.38992 -15.11257 -14.96720 -14.66260 -14.59752 -14.30288 -14.01598 -13.85526 -13.79707 -13.54024 -13.41061 -13.38177 -13.32876 -13.17713 -13.04178 -12.86636 -12.76595 -12.63278 -12.44960 -12.32668 -12.12729 -12.05934 -11.80681 -11.52626 -10.85860 -10.56002 -10.41658 -10.04305 -9.66978 -9.64174 -9.45669 -8.48224 -5.97539 1.38998 1.40689 1.52100 1.61426 1.76046 1.98748 2.01642 2.13414 2.29152 2.96232 3.18239 3.35120 3.46557 3.51783 3.73059 3.87498 4.00220 4.10915 4.23936 4.26697 4.34021 4.35213 4.37642 4.44388 4.47501 4.50020 4.54546 4.56223 4.60877 4.73865 4.76876 4.81295 4.82559 4.86779 4.96382 5.00730 5.12098 5.25275 5.38861 5.51519 5.64545 5.82348 6.04098 6.15182 6.22907 6.47130 6.57534 7.09901 7.24207 7.32527 7.52523 8.08080 8.68959 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.001650 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.106314 B =16966.902495 C =17227.550634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.620 5.620 3 C 0.124 3.876 4 C 0.060 3.940 5 N -0.678 5.678 6 C 0.067 3.933 7 C 0.436 3.564 8 O -0.624 6.624 9 N -0.571 5.571 10 C -0.338 4.338 11 H 0.078 0.922 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.995 3.005 15 H -0.273 1.273 16 H -0.268 1.268 17 H -0.271 1.271 18 C 0.495 3.505 19 O -0.571 6.571 20 C -0.112 4.112 21 C -0.111 4.111 22 H 0.099 0.901 23 C -0.113 4.113 24 C 0.095 3.905 25 N -0.632 5.632 26 C 0.092 3.908 27 C 0.497 3.503 28 O -0.568 6.568 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.019 0.981 35 H 0.092 0.908 36 H 0.340 0.660 37 H 0.060 0.940 38 H 0.111 0.889 39 H 0.397 0.603 40 H 0.279 0.721 41 H 0.110 0.890 42 H 0.146 0.854 43 H 0.108 0.892 44 H 0.120 0.880 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.052 0.948 48 H 0.051 0.949 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.255 -32.371 9.519 37.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.353 5.353 3 C 0.000 4.000 4 C -0.070 4.070 5 N -0.310 5.310 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.208 5.208 10 C -0.467 4.467 11 H 0.096 0.904 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.819 3.181 15 H -0.199 1.199 16 H -0.192 1.192 17 H -0.196 1.196 18 C 0.284 3.716 19 O -0.449 6.449 20 C -0.152 4.152 21 C -0.133 4.133 22 H 0.117 0.883 23 C -0.150 4.150 24 C -0.026 4.026 25 N -0.367 5.367 26 C -0.050 4.050 27 C 0.285 3.715 28 O -0.446 6.446 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.037 0.963 35 H 0.110 0.890 36 H 0.158 0.842 37 H 0.078 0.922 38 H 0.129 0.871 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.128 0.872 42 H 0.163 0.837 43 H 0.127 0.873 44 H 0.138 0.862 45 H 0.126 0.874 46 H 0.097 0.903 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.702 -31.158 10.492 36.876 hybrid contribution 1.739 0.421 -0.510 1.860 sum -14.963 -30.737 9.982 35.613 Atomic orbital electron populations 1.22129 0.76530 1.05325 1.03134 1.47935 1.08693 1.04865 1.73854 1.21141 0.97464 0.85493 0.95916 1.22231 0.98910 0.88341 0.97554 1.60073 1.28098 1.30106 1.12699 1.21526 1.00635 0.93008 0.91382 1.20816 0.84265 0.88641 0.83903 1.90492 1.60685 1.68815 1.31035 1.41902 1.50305 1.21128 1.07452 1.19657 1.33361 0.99465 0.94264 0.90350 1.26072 0.98350 1.02888 0.93904 1.69670 1.47094 1.41288 0.97912 0.84959 0.78294 0.77155 0.77726 1.19855 1.19235 1.19605 1.21465 0.87997 0.86878 0.75244 1.90746 1.16409 1.87823 1.49894 1.21655 0.97997 0.88296 1.07208 1.21804 0.98559 0.97625 0.95269 0.88316 1.22786 0.99535 0.90030 1.02694 1.22412 0.96785 0.92827 0.90583 1.48448 1.58315 1.08049 1.21879 1.21616 0.98178 1.01105 0.84082 1.21526 0.79236 0.82552 0.88158 1.90753 1.49433 1.41800 1.62617 0.91677 0.89893 0.87899 0.88625 0.93250 0.96309 0.88957 0.84167 0.92215 0.87075 0.76900 0.91197 0.87195 0.83666 0.87316 0.86207 0.87443 0.90252 0.92980 0.92997 0.87610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.24 127.77 1.31 2.02 16 2 N -0.62 -13.01 2.87 -846.76 -2.43 -15.44 16 3 C 0.12 3.31 5.67 86.38 0.49 3.80 16 4 C 0.06 1.67 6.01 86.31 0.52 2.18 16 5 N -0.68 -24.27 6.13 -517.95 -3.17 -27.44 16 6 C 0.07 2.52 6.17 85.55 0.53 3.04 16 7 C 0.44 22.10 7.82 87.65 0.69 22.78 16 8 O -0.62 -36.67 15.78 -3.09 -0.05 -36.72 16 9 N -0.57 -30.63 5.29 -306.99 -1.62 -32.25 16 10 C -0.34 -19.90 9.68 84.04 0.81 -19.09 16 11 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 12 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 13 N -0.92 -50.62 13.05 21.66 0.28 -50.34 16 14 Si 1.00 44.06 29.55 68.60 2.03 46.08 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 C 0.49 12.20 7.14 87.66 0.63 12.82 16 19 O -0.57 -20.83 13.62 17.44 0.24 -20.59 16 20 C -0.11 -1.40 3.64 29.85 0.11 -1.29 16 21 C -0.11 -1.60 2.54 -10.80 -0.03 -1.63 16 22 H 0.10 1.79 7.90 -2.39 -0.02 1.77 16 23 C -0.11 -0.33 6.70 31.65 0.21 -0.12 16 24 C 0.10 0.48 7.35 86.83 0.64 1.12 16 25 N -0.63 -9.61 3.33 -842.89 -2.81 -12.42 16 26 C 0.09 1.18 10.96 127.77 1.40 2.58 16 27 C 0.50 11.70 7.29 87.90 0.64 12.34 16 28 O -0.57 -20.44 15.20 17.45 0.27 -20.17 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.75 8.07 -2.39 -0.02 0.73 16 31 H 0.10 0.36 6.45 -2.39 -0.02 0.34 16 32 H 0.10 2.32 8.07 -2.39 -0.02 2.30 16 33 H 0.05 1.66 7.42 -2.39 -0.02 1.65 16 34 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.34 13.44 8.43 -89.69 -0.76 12.68 16 37 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 39 H 0.40 20.10 7.90 -92.71 -0.73 19.37 16 40 H 0.28 14.34 8.31 -92.71 -0.77 13.56 16 41 H 0.11 1.05 8.09 -2.38 -0.02 1.04 16 42 H 0.15 0.56 7.41 -2.39 -0.02 0.54 16 43 H 0.11 -0.13 7.91 -2.38 -0.02 -0.15 16 44 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 46 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 47 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.05 0.90 7.93 -2.38 -0.02 0.88 16 49 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -92.61 405.30 0.62 -91.99 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: -0.52 Total: 36.94 kcal Atomic # 6 Polarization: 31.94 SS G_CDS: 8.41 Total: 40.35 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -9.76 Total: -137.89 kcal Atomic # 8 Polarization: -77.94 SS G_CDS: 0.45 Total: -77.48 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -92.61 0.62 -91.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753201186.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.929 kcal (2) G-P(sol) polarization free energy of solvation -92.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds