Wall clock time and date at job start Sat Apr 11 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99837 * 2 1 4 4 C 1.53003 * 109.46902 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46831 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47382 * 180.02562 * 5 4 3 7 7 C 1.42891 * 114.00571 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.47460 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47059 * 64.99518 * 8 7 6 10 10 C 1.46493 * 120.00304 * 270.00609 * 9 8 7 11 11 C 1.34780 * 119.99982 * 90.00180 * 9 8 7 12 12 O 1.21591 * 119.99638 * 359.97438 * 11 9 8 13 13 N 1.34768 * 120.00283 * 180.02562 * 11 9 8 14 14 C 1.40196 * 120.00423 * 180.02562 * 13 11 9 15 15 C 1.40405 * 125.97001 * 0.02562 * 14 13 11 16 16 C 1.35238 * 107.87064 * 179.74102 * 15 14 13 17 17 N 1.34966 * 107.85507 * 0.36692 * 16 15 14 18 18 C 1.46500 * 125.97782 * 179.89559 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71059 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31207 * 125.97824 * 179.97438 * 14 13 11 28 28 H 1.09000 * 109.46940 * 299.99344 * 1 2 3 29 29 H 1.08996 * 109.47416 * 59.99551 * 1 2 3 30 30 H 1.09000 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46823 * 60.00296 * 3 2 1 32 32 H 1.09001 * 109.47468 * 300.00198 * 3 2 1 33 33 H 1.08994 * 109.46897 * 60.00359 * 4 3 2 34 34 H 1.08996 * 109.46812 * 300.00088 * 4 3 2 35 35 H 1.09000 * 109.47295 * 59.99883 * 5 4 3 36 36 H 1.09001 * 109.47289 * 300.00026 * 5 4 3 37 37 H 1.09001 * 109.47433 * 59.99830 * 7 6 5 38 38 H 1.08997 * 109.47317 * 299.99550 * 7 6 5 39 39 H 1.09004 * 109.46582 * 305.00098 * 8 7 6 40 40 H 1.09001 * 109.46985 * 184.99838 * 8 7 6 41 41 H 1.09006 * 109.46871 * 270.00160 * 10 9 8 42 42 H 1.08997 * 109.47239 * 29.99517 * 10 9 8 43 43 H 1.08992 * 109.47703 * 150.00288 * 10 9 8 44 44 H 0.97000 * 119.99831 * 359.97438 * 13 11 9 45 45 H 1.08004 * 126.06253 * 359.96901 * 15 14 13 46 46 H 1.07999 * 126.07487 * 180.25848 * 16 15 14 47 47 H 1.09004 * 109.47078 * 4.71821 * 18 17 16 48 48 H 1.08993 * 109.47364 * 244.71592 * 18 17 16 49 49 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1577 2.5824 0.0000 6 8 5.5823 2.4697 -0.0012 7 6 6.2647 3.7251 -0.0001 8 6 7.7757 3.4843 -0.0009 9 7 8.1656 2.8321 -1.2535 10 6 8.1797 1.3701 -1.3448 11 6 8.5113 3.5773 -2.3220 12 8 8.4991 4.7908 -2.2465 13 7 8.8695 2.9775 -3.4745 14 6 9.2296 3.7526 -4.5858 15 6 9.2618 5.1554 -4.6374 16 6 9.6639 5.5159 -5.8772 17 7 9.8715 4.3883 -6.5893 18 6 10.3135 4.3204 -7.9843 19 6 11.5546 3.4707 -8.0774 20 1 11.9721 3.0254 -7.1864 21 6 12.1571 3.2617 -9.2997 22 7 11.6456 3.7996 -10.3854 23 14 13.6951 2.2079 -9.4151 24 1 14.1398 2.1343 -10.8301 25 1 14.7716 2.8111 -8.5887 26 1 13.3968 0.8407 -8.9182 27 7 9.5965 3.2941 -5.7592 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8465 -0.8900 33 1 3.8567 0.6440 -0.8909 34 1 3.8574 0.6436 0.8891 35 1 3.8364 3.1228 0.8904 36 1 3.8358 3.1239 -0.8895 37 1 5.9875 4.2886 0.8907 38 1 5.9863 4.2908 -0.8892 39 1 8.0420 2.8441 0.8402 40 1 8.2957 4.4380 0.0894 41 1 9.1630 0.9976 -1.0572 42 1 7.4249 0.9570 -0.6757 43 1 7.9620 1.0678 -2.3690 44 1 8.8789 2.0095 -3.5349 45 1 9.0132 5.8272 -3.8291 46 1 9.7941 6.5267 -6.2347 47 1 10.5333 5.3253 -8.3451 48 1 9.5249 3.8798 -8.5943 49 1 10.8468 4.3467 -10.3256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091179058.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:32 Heat of formation + Delta-G solvation = -32.729882 kcal Electronic energy + Delta-G solvation = -28848.457174 eV Core-core repulsion = 24620.535297 eV Total energy + Delta-G solvation = -4227.921876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.84202 -39.82300 -38.72234 -38.04481 -35.74135 -34.85899 -33.69010 -33.17478 -31.00317 -29.90105 -29.28016 -27.49760 -26.80822 -26.08355 -25.10414 -23.72307 -22.82134 -22.02664 -21.14469 -20.34382 -19.28743 -18.03748 -17.21206 -17.15723 -17.10160 -16.71339 -16.47072 -16.29510 -15.80167 -15.52070 -15.24870 -14.74355 -14.52548 -14.36245 -13.96922 -13.76235 -13.73576 -13.34876 -13.11114 -12.87260 -12.61100 -12.50371 -12.33566 -12.21325 -12.15363 -12.03970 -11.78527 -11.65524 -11.45635 -11.30335 -11.13556 -10.79538 -10.42499 -10.17183 -10.14686 -10.10087 -9.94649 -9.66214 -9.00129 -8.82686 -8.55974 -8.14190 -7.43425 -6.55906 -4.29761 2.33927 2.61299 2.90070 3.07087 3.38761 3.40329 3.41342 3.60248 3.68292 3.81910 4.10312 4.42954 4.43998 4.61546 4.67871 4.79940 4.82225 4.84286 4.88494 4.93167 4.96312 5.02786 5.06274 5.10424 5.17748 5.21167 5.28031 5.36193 5.48281 5.56500 5.61301 5.64287 5.69205 5.76762 6.11423 6.31628 6.48831 6.51676 6.63674 6.69925 6.78078 6.82686 6.94784 7.45662 7.64545 7.87296 7.88789 8.37302 8.56656 8.59201 8.66645 9.38420 10.81515 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013948 B = 0.001829 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.977945 B =15305.702032 C =16102.698977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.064 3.936 4 C -0.118 4.118 5 C 0.067 3.933 6 O -0.384 6.384 7 C 0.044 3.956 8 C 0.140 3.860 9 N -0.625 5.625 10 C 0.079 3.921 11 C 0.714 3.286 12 O -0.570 6.570 13 N -0.643 5.643 14 C 0.277 3.723 15 C -0.284 4.284 16 C 0.050 3.950 17 N -0.319 5.319 18 C 0.250 3.750 19 C -0.607 4.607 20 H 0.063 0.937 21 C 0.022 3.978 22 N -0.905 5.905 23 Si 1.077 2.923 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.285 1.285 27 N -0.306 5.306 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.407 0.593 45 H 0.162 0.838 46 H 0.167 0.833 47 H 0.046 0.954 48 H 0.034 0.966 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.972 -3.212 24.843 30.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.013 4.013 4 C -0.156 4.156 5 C -0.010 4.010 6 O -0.303 6.303 7 C -0.034 4.034 8 C 0.017 3.983 9 N -0.362 5.362 10 C -0.065 4.065 11 C 0.415 3.585 12 O -0.446 6.446 13 N -0.294 5.294 14 C 0.023 3.977 15 C -0.315 4.315 16 C -0.100 4.100 17 N -0.101 5.101 18 C 0.132 3.868 19 C -0.645 4.645 20 H 0.082 0.918 21 C -0.182 4.182 22 N -0.541 5.541 23 Si 0.904 3.096 24 H -0.205 1.205 25 H -0.213 1.213 26 H -0.212 1.212 27 N -0.137 5.137 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.121 0.879 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.244 0.756 45 H 0.179 0.821 46 H 0.184 0.816 47 H 0.063 0.937 48 H 0.052 0.948 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.410 -4.326 23.005 28.587 hybrid contribution -1.749 1.271 1.461 2.609 sum -18.159 -3.055 24.466 30.621 Atomic orbital electron populations 1.22763 0.80692 1.02979 1.00071 1.87874 1.19952 1.27731 1.95445 1.22371 0.93547 0.84931 1.00420 1.21355 0.92629 0.96857 1.04727 1.22262 0.81631 0.96761 1.00314 1.87830 1.17456 1.29531 1.95482 1.23067 0.93350 0.85930 1.01031 1.21384 0.92184 0.99890 0.84883 1.46857 1.71423 1.06541 1.11422 1.21804 1.02292 0.79412 1.02962 1.15589 0.78090 0.85119 0.79671 1.90843 1.59767 1.11437 1.82584 1.41562 1.69611 1.09488 1.08723 1.18816 1.01038 0.90404 0.87430 1.21520 1.17600 0.93509 0.98877 1.22546 1.01578 0.93239 0.92635 1.48751 1.48205 1.01503 1.11635 1.19740 0.96378 0.98835 0.71889 1.22113 1.10804 1.34349 0.97282 0.91845 1.25921 1.03032 0.97855 0.91401 1.70851 1.22299 1.31064 1.29866 0.83418 0.74404 0.75681 0.76104 1.20545 1.21251 1.21154 1.77342 1.25336 1.10971 1.00005 0.94012 0.93920 0.89430 0.93135 0.93036 0.90119 0.90227 0.93276 0.93219 0.92314 0.92426 0.89522 0.87931 0.92623 0.89571 0.91660 0.75598 0.82064 0.81586 0.93655 0.94836 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.33 10.70 -35.23 -0.38 -3.71 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 C -0.12 -0.85 5.95 -26.73 -0.16 -1.01 16 5 C 0.07 0.49 5.94 37.16 0.22 0.71 16 6 O -0.38 -3.43 9.17 -35.23 -0.32 -3.75 16 7 C 0.04 0.38 6.28 37.16 0.23 0.61 16 8 C 0.14 1.25 5.81 -4.04 -0.02 1.23 16 9 N -0.62 -7.03 2.84 -187.35 -0.53 -7.56 16 10 C 0.08 0.68 10.02 59.84 0.60 1.27 16 11 C 0.71 11.04 8.25 -86.92 -0.72 10.33 16 12 O -0.57 -10.30 13.05 5.29 0.07 -10.23 16 13 N -0.64 -10.67 5.32 -15.51 -0.08 -10.75 16 14 C 0.28 5.79 8.11 -154.36 -1.25 4.54 16 15 C -0.28 -5.80 9.61 -39.83 -0.38 -6.19 16 16 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 17 N -0.32 -7.62 3.67 -62.56 -0.23 -7.85 16 18 C 0.25 6.42 5.57 -5.19 -0.03 6.39 16 19 C -0.61 -17.30 9.24 -34.44 -0.32 -17.62 16 20 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 21 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 22 N -0.91 -26.56 13.65 55.43 0.76 -25.80 16 23 Si 1.08 25.14 29.90 -169.99 -5.08 20.06 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 N -0.31 -7.27 12.42 31.44 0.39 -6.88 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.59 8.07 -51.93 -0.42 0.17 16 40 H 0.10 0.97 7.42 -51.93 -0.39 0.59 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.66 7.11 -51.93 -0.37 0.29 16 43 H 0.06 0.56 6.36 -51.93 -0.33 0.23 16 44 H 0.41 5.74 6.55 -40.82 -0.27 5.47 16 45 H 0.16 3.21 5.91 -52.48 -0.31 2.90 16 46 H 0.17 2.78 8.06 -52.49 -0.42 2.35 16 47 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 48 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 49 H 0.27 7.66 7.22 -40.82 -0.29 7.37 16 LS Contribution 408.83 15.07 6.16 6.16 Total: -1.00 -35.32 408.83 -7.94 -43.27 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.91 Total: 3.49 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -0.79 Total: 3.55 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.30 Total: -58.84 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.63 Total: -17.69 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.06 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.32 -7.94 -43.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091179058.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.539 kcal (2) G-P(sol) polarization free energy of solvation -35.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds