Wall clock time and date at job start Sat Apr 11 2020 06:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00335 * 2 1 4 4 C 1.34779 * 120.00107 * 179.97438 * 2 1 3 5 5 O 1.21284 * 119.99695 * 0.02562 * 4 2 1 6 6 C 1.50696 * 120.00208 * 180.02562 * 4 2 1 7 7 H 1.09001 * 109.47328 * 60.00147 * 6 4 2 8 8 C 1.52997 * 109.46910 * 299.99840 * 6 4 2 9 9 C 1.53006 * 109.47164 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.47127 * 59.99836 * 9 8 6 11 11 C 1.53000 * 109.47060 * 300.00449 * 10 9 8 12 12 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 13 13 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 14 14 C 1.34778 * 120.00288 * 84.99811 * 13 11 10 15 15 O 1.21589 * 119.99852 * 359.97438 * 14 13 11 16 16 N 1.34776 * 120.00011 * 179.97438 * 14 13 11 17 17 C 1.46502 * 120.00068 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47573 * 180.02562 * 17 16 14 19 19 O 1.21303 * 119.99496 * 0.02562 * 18 17 16 20 20 N 1.34768 * 120.00583 * 179.97438 * 18 17 16 21 21 C 1.37090 * 120.00360 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99968 * 0.02562 * 21 20 18 23 23 C 1.38957 * 120.00219 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99681 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00237 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46803 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47459 * 119.99770 * 25 23 21 28 28 H 1.48497 * 109.47019 * 239.99903 * 25 23 21 29 29 C 1.52996 * 109.47328 * 60.00126 * 11 10 9 30 30 H 1.08996 * 109.47565 * 240.00710 * 1 2 3 31 31 H 1.09000 * 109.46876 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47062 * 120.00175 * 1 2 3 33 33 H 1.09003 * 109.47088 * 269.99804 * 3 2 1 34 34 H 1.08999 * 109.46828 * 29.99035 * 3 2 1 35 35 H 1.09001 * 109.47504 * 149.99575 * 3 2 1 36 36 H 1.09001 * 109.47375 * 300.00278 * 8 6 4 37 37 H 1.09000 * 109.47140 * 60.00295 * 8 6 4 38 38 H 1.08998 * 109.46505 * 299.99708 * 9 8 6 39 39 H 1.08996 * 109.46884 * 180.02562 * 9 8 6 40 40 H 1.09002 * 109.47153 * 180.02562 * 10 9 8 41 41 H 1.09001 * 109.46832 * 60.00321 * 10 9 8 42 42 H 0.97001 * 120.00197 * 264.99912 * 13 11 10 43 43 H 0.96997 * 120.00068 * 0.02562 * 16 14 13 44 44 H 1.09003 * 109.47226 * 300.00481 * 17 16 14 45 45 H 1.08999 * 109.47244 * 59.99950 * 17 16 14 46 46 H 0.97002 * 119.99900 * 0.02562 * 20 18 17 47 47 H 0.96998 * 120.00016 * 180.02562 * 24 23 21 48 48 H 1.08992 * 109.47554 * 59.99639 * 29 11 10 49 49 H 1.09004 * 109.47108 * 179.97438 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5324 -2.2175 0.0005 6 6 3.6458 -1.1672 0.0011 7 1 4.0089 -0.6532 0.8911 8 6 4.1563 -0.4463 -1.2481 9 6 5.6863 -0.4469 -1.2479 10 6 6.1958 -1.8895 -1.2476 11 6 5.6853 -2.6104 0.0016 12 1 6.0487 -2.0967 0.8916 13 7 6.1736 -3.9916 0.0021 14 6 7.3954 -4.2743 0.4959 15 8 8.0926 -3.3828 0.9405 16 7 7.8444 -5.5451 0.4968 17 6 9.1727 -5.8522 1.0330 18 6 9.4314 -7.3323 0.9172 19 8 8.5891 -8.0591 0.4338 20 7 10.5988 -7.8484 1.3498 21 6 10.8338 -9.1949 1.2449 22 1 10.0835 -9.8422 0.8152 23 6 12.0373 -9.7270 1.6914 24 7 12.9499 -8.9396 2.2146 25 14 12.3578 -11.5617 1.5478 26 1 11.1809 -12.2228 0.9287 27 1 13.5565 -11.7901 0.7016 28 1 12.5904 -12.1308 2.8995 29 6 4.1553 -2.6099 0.0013 30 1 -0.3634 -0.5137 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 2.3792 1.5833 -1.0277 34 1 1.6084 2.0284 0.5137 35 1 3.1499 1.1384 0.5139 36 1 3.7932 -0.9603 -2.1381 37 1 3.7930 0.5814 -1.2485 38 1 6.0496 0.0670 -0.3579 39 1 6.0499 0.0671 -2.1376 40 1 7.2858 -1.8899 -1.2470 41 1 5.8324 -2.4033 -2.1377 42 1 5.6177 -4.7028 -0.3530 43 1 7.2885 -6.2561 0.1417 44 1 9.9280 -5.3064 0.4675 45 1 9.2190 -5.5559 2.0810 46 1 11.2725 -7.2671 1.7360 47 1 13.7902 -9.3109 2.5260 48 1 3.7919 -3.1237 -0.8887 49 1 3.7916 -3.1240 0.8911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358275810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:58 Heat of formation + Delta-G solvation = -110.510632 kcal Electronic energy + Delta-G solvation = -29338.338246 eV Core-core repulsion = 25107.043544 eV Total energy + Delta-G solvation = -4231.294703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90223 -39.85072 -38.39543 -37.68516 -36.07349 -34.42096 -34.13760 -33.59228 -31.48644 -31.35084 -29.98054 -28.33594 -27.15765 -26.76117 -24.47886 -23.41878 -22.64334 -20.71442 -20.46588 -19.61015 -19.45302 -18.31836 -17.94594 -17.38776 -16.66917 -16.20367 -15.84209 -15.60183 -15.41696 -15.33150 -14.70108 -14.52859 -14.41616 -14.28509 -13.97545 -13.76925 -13.60307 -13.46264 -13.21726 -13.15185 -13.04557 -12.75849 -12.66124 -12.34702 -12.14709 -11.93147 -11.66191 -11.61170 -11.48808 -11.12599 -10.96742 -10.86313 -10.75221 -10.39028 -10.30452 -10.05086 -9.92571 -9.62298 -9.16074 -9.08690 -8.59407 -8.56130 -8.07399 -6.49223 -3.91010 2.24856 2.51068 2.87934 3.12068 3.24167 3.31150 3.44302 3.78169 3.97818 4.10346 4.28896 4.35177 4.50363 4.54589 4.68769 4.76819 4.78262 4.87560 4.93060 4.97512 5.03827 5.05233 5.11478 5.16865 5.19053 5.19722 5.31816 5.35641 5.58536 5.65124 5.71178 5.82354 5.91211 5.93766 5.97769 6.04061 6.08502 6.11589 6.14740 6.60689 6.80288 6.86737 7.16575 7.48523 7.76938 7.95328 8.29453 8.48010 8.84995 9.07336 9.42369 9.90405 10.67803 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.031180 B = 0.001672 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.810386 B =16741.011867 C =17275.925012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.624 5.624 3 C 0.074 3.926 4 C 0.518 3.482 5 O -0.534 6.534 6 C -0.100 4.100 7 H 0.101 0.899 8 C -0.123 4.123 9 C -0.113 4.113 10 C -0.134 4.134 11 C 0.168 3.832 12 H 0.088 0.912 13 N -0.745 5.745 14 C 0.706 3.294 15 O -0.599 6.599 16 N -0.725 5.725 17 C 0.129 3.871 18 C 0.429 3.571 19 O -0.597 6.597 20 N -0.550 5.550 21 C -0.304 4.304 22 H 0.106 0.894 23 C 0.025 3.975 24 N -0.895 5.895 25 Si 0.932 3.068 26 H -0.267 1.267 27 H -0.280 1.280 28 H -0.281 1.281 29 C -0.107 4.107 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.397 0.603 43 H 0.407 0.593 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.396 0.604 47 H 0.273 0.727 48 H 0.076 0.924 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.974 23.866 -5.573 31.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.359 5.359 3 C -0.069 4.069 4 C 0.306 3.694 5 O -0.410 6.410 6 C -0.121 4.121 7 H 0.119 0.881 8 C -0.161 4.161 9 C -0.151 4.151 10 C -0.173 4.173 11 C 0.062 3.938 12 H 0.106 0.894 13 N -0.400 5.400 14 C 0.406 3.594 15 O -0.478 6.478 16 N -0.382 5.382 17 C 0.001 3.999 18 C 0.215 3.785 19 O -0.484 6.484 20 N -0.185 5.185 21 C -0.434 4.434 22 H 0.124 0.876 23 C -0.178 4.178 24 N -0.535 5.535 25 Si 0.759 3.241 26 H -0.192 1.192 27 H -0.206 1.206 28 H -0.206 1.206 29 C -0.145 4.145 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.231 0.769 43 H 0.244 0.756 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.230 0.770 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.997 23.553 -5.384 31.363 hybrid contribution 0.154 -1.095 -0.098 1.110 sum -19.843 22.458 -5.482 30.466 Atomic orbital electron populations 1.21620 0.79105 1.02189 1.02456 1.47768 1.07079 1.06496 1.74545 1.22051 0.97656 0.85169 1.02016 1.20733 0.90145 0.83011 0.75542 1.90719 1.70407 1.30980 1.48849 1.21240 0.91033 0.98734 1.01141 0.88098 1.21853 0.96746 1.00892 0.96588 1.21470 0.94096 0.96915 1.02630 1.22006 1.01901 0.95229 0.98148 1.20705 0.92322 0.81624 0.99129 0.89363 1.45097 1.17441 1.09688 1.67770 1.15851 0.81614 0.83109 0.78872 1.90890 1.57286 1.45965 1.53633 1.44787 1.19302 1.07510 1.66630 1.20769 0.84021 0.95218 0.99925 1.19787 0.84422 0.88768 0.85565 1.90497 1.46177 1.60890 1.50838 1.41788 1.14544 1.09195 1.52959 1.19783 1.01855 0.83096 1.38634 0.87642 1.25322 0.95355 1.00625 0.96456 1.69623 1.07542 1.35954 1.40391 0.85757 0.78524 0.81813 0.77983 1.19158 1.20639 1.20643 1.21600 0.93888 0.94778 1.04268 0.92097 0.90720 0.92114 0.91989 0.91021 0.90358 0.91286 0.90386 0.91365 0.91225 0.90830 0.91747 0.76943 0.75598 0.90070 0.90058 0.77029 0.91676 0.90536 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.16 59.84 0.61 1.11 16 2 N -0.62 -4.08 3.27 -189.52 -0.62 -4.70 16 3 C 0.07 0.23 8.77 59.85 0.52 0.75 16 4 C 0.52 4.79 7.08 -10.99 -0.08 4.72 16 5 O -0.53 -7.11 15.98 5.55 0.09 -7.02 16 6 C -0.10 -0.73 1.72 -91.77 -0.16 -0.89 16 7 H 0.10 0.61 7.40 -51.93 -0.38 0.23 16 8 C -0.12 -0.70 4.84 -26.73 -0.13 -0.83 16 9 C -0.11 -0.74 5.92 -26.73 -0.16 -0.90 16 10 C -0.13 -1.26 5.49 -26.73 -0.15 -1.40 16 11 C 0.17 1.75 2.45 -67.93 -0.17 1.58 16 12 H 0.09 1.05 7.58 -51.93 -0.39 0.65 16 13 N -0.75 -9.18 5.08 -58.68 -0.30 -9.48 16 14 C 0.71 11.54 8.53 -86.92 -0.74 10.80 16 15 O -0.60 -11.56 16.01 5.29 0.08 -11.47 16 16 N -0.73 -12.44 5.53 -66.41 -0.37 -12.81 16 17 C 0.13 2.44 6.15 -5.19 -0.03 2.41 16 18 C 0.43 9.98 7.85 -10.99 -0.09 9.89 16 19 O -0.60 -15.49 15.24 5.54 0.08 -15.40 16 20 N -0.55 -13.78 5.29 -10.96 -0.06 -13.84 16 21 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 22 H 0.11 3.02 7.16 -52.48 -0.38 2.64 16 23 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 24 N -0.89 -24.05 13.05 55.50 0.72 -23.32 16 25 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 C -0.11 -0.98 3.96 -26.73 -0.11 -1.08 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.21 7.79 -51.93 -0.40 -0.20 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.13 6.95 -51.93 -0.36 -0.23 16 34 H 0.07 0.12 7.92 -51.93 -0.41 -0.30 16 35 H 0.08 0.19 6.01 -51.93 -0.31 -0.12 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.30 4.53 -51.93 -0.24 0.06 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.40 4.16 8.62 -40.82 -0.35 3.81 16 43 H 0.41 6.83 7.45 -40.82 -0.30 6.53 16 44 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 46 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 47 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 49 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -34.93 395.54 -7.97 -42.90 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -7.64 Total: 15.27 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: -0.91 Total: 18.23 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -0.62 Total: -64.15 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: 0.26 Total: -33.90 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.93 -7.97 -42.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358275810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.607 kcal (2) G-P(sol) polarization free energy of solvation -34.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds