Wall clock time and date at job start Sat Apr 11 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46508 * 119.99663 * 2 1 4 4 C 1.34771 * 120.00822 * 179.97438 * 2 1 3 5 5 O 1.21285 * 119.99847 * 4.82650 * 4 2 1 6 6 C 1.50702 * 120.00691 * 184.82529 * 4 2 1 7 7 H 1.08997 * 109.46846 * 309.84007 * 6 4 2 8 8 C 1.52998 * 109.46842 * 69.83860 * 6 4 2 9 9 C 1.52995 * 109.47137 * 180.02562 * 8 6 4 10 10 C 1.53007 * 109.47167 * 299.99963 * 9 8 6 11 11 C 1.53001 * 109.46727 * 59.99861 * 10 9 8 12 12 H 1.09008 * 109.46817 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.47363 * 60.00188 * 11 10 9 14 14 C 1.34783 * 119.99950 * 84.99535 * 13 11 10 15 15 O 1.21591 * 119.99599 * 0.02562 * 14 13 11 16 16 N 1.34769 * 120.00047 * 180.02562 * 14 13 11 17 17 C 1.46501 * 120.00038 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46808 * 179.97438 * 17 16 14 19 19 O 1.21288 * 120.00411 * 359.97438 * 18 17 16 20 20 N 1.34786 * 119.99613 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99565 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00573 * 359.97438 * 21 20 18 23 23 C 1.38960 * 119.99835 * 180.02562 * 21 20 18 24 24 N 1.31405 * 120.00239 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99686 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47044 * 90.00295 * 25 23 21 27 27 H 1.48500 * 109.46858 * 210.00414 * 25 23 21 28 28 H 1.48504 * 109.46975 * 330.00087 * 25 23 21 29 29 C 1.52995 * 109.47410 * 299.99990 * 11 10 9 30 30 H 1.09006 * 109.46871 * 240.00014 * 1 2 3 31 31 H 1.08996 * 109.47776 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47055 * 120.00755 * 1 2 3 33 33 H 1.09002 * 109.46602 * 263.31487 * 3 2 1 34 34 H 1.08999 * 109.46802 * 23.30913 * 3 2 1 35 35 H 1.09000 * 109.47428 * 143.31302 * 3 2 1 36 36 H 1.08997 * 109.47280 * 60.00412 * 8 6 4 37 37 H 1.09000 * 109.47460 * 300.00015 * 8 6 4 38 38 H 1.09004 * 109.47380 * 179.97438 * 9 8 6 39 39 H 1.09004 * 109.47594 * 59.99782 * 9 8 6 40 40 H 1.08995 * 109.46763 * 300.00206 * 10 9 8 41 41 H 1.09001 * 109.47114 * 179.97438 * 10 9 8 42 42 H 0.96991 * 120.00110 * 265.00066 * 13 11 10 43 43 H 0.97000 * 119.99983 * 359.97438 * 16 14 13 44 44 H 1.08992 * 109.46897 * 299.99548 * 17 16 14 45 45 H 1.08997 * 109.47313 * 59.99830 * 17 16 14 46 46 H 0.97000 * 120.00049 * 359.97438 * 20 18 17 47 47 H 0.96995 * 120.00057 * 179.97438 * 24 23 21 48 48 H 1.08995 * 109.47453 * 180.02562 * 29 11 10 49 49 H 1.09007 * 109.47105 * 300.00313 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1390 -1.1671 0.0005 5 8 1.5359 -2.2157 -0.0874 6 6 3.6420 -1.1693 0.1103 7 1 4.0608 -0.4792 -0.6221 8 6 4.0512 -0.7297 1.5175 9 6 5.5771 -0.7313 1.6288 10 6 6.1065 -2.1416 1.3610 11 6 5.6972 -2.5812 -0.0462 12 1 6.0740 -3.5862 -0.2369 13 7 6.2597 -1.6534 -1.0306 14 6 7.5176 -1.8299 -1.4812 15 8 8.1854 -2.7595 -1.0710 16 7 8.0352 -0.9761 -2.3864 17 6 9.4023 -1.1683 -2.8766 18 6 9.7354 -0.0875 -3.8726 19 8 8.9117 0.7597 -4.1464 20 7 10.9487 -0.0623 -4.4591 21 6 11.2515 0.9207 -5.3656 22 1 10.5177 1.6745 -5.6100 23 6 12.5021 0.9464 -5.9707 24 7 12.7922 1.8882 -6.8399 25 14 13.7710 -0.3579 -5.5483 26 1 13.6225 -1.5106 -6.4727 27 1 15.1342 0.2147 -5.6861 28 1 13.5649 -0.8147 -4.1504 29 6 4.1714 -2.5796 -0.1576 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8899 33 1 2.4826 1.5236 -1.0207 34 1 1.5617 2.0553 0.4066 35 1 3.0928 1.1716 0.6140 36 1 3.6324 -1.4198 2.2499 37 1 3.6744 0.2752 1.7082 38 1 5.8686 -0.4176 2.6312 39 1 5.9956 -0.0409 0.8964 40 1 5.6880 -2.8319 2.0933 41 1 7.1936 -2.1427 1.4398 42 1 5.7268 -0.9120 -1.3581 43 1 7.5023 -0.2347 -2.7139 44 1 10.0987 -1.1186 -2.0396 45 1 9.4820 -2.1428 -3.3582 46 1 11.6075 -0.7395 -4.2398 47 1 13.6654 1.9063 -7.2620 48 1 3.8798 -2.8932 -1.1599 49 1 3.7529 -3.2700 0.5749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358275811.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:00 Heat of formation + Delta-G solvation = -100.728784 kcal Electronic energy + Delta-G solvation = -30017.006286 eV Core-core repulsion = 25786.135756 eV Total energy + Delta-G solvation = -4230.870530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.02665 -39.91502 -38.61716 -37.77045 -35.99096 -34.49669 -33.81188 -33.70353 -31.80952 -31.51070 -30.23970 -28.35895 -27.45956 -26.69426 -24.36126 -23.39103 -22.86550 -21.24367 -19.99323 -19.67831 -19.23376 -18.75293 -18.24448 -17.23660 -16.66009 -16.13085 -16.03222 -15.62131 -15.59902 -15.45598 -14.98427 -14.65014 -14.50906 -14.32474 -13.95580 -13.89645 -13.46589 -13.21355 -13.15479 -13.12034 -12.88003 -12.63532 -12.56655 -12.51317 -12.43084 -12.16585 -12.09853 -12.02570 -11.62427 -11.23976 -11.09716 -10.82309 -10.64577 -10.54169 -10.09482 -10.05748 -9.96176 -9.70312 -9.18144 -9.10421 -8.77294 -8.68294 -8.31017 -6.41491 -3.94009 2.25193 2.58633 2.76924 2.99489 3.04309 3.12455 3.34497 3.57533 3.98251 4.03092 4.24636 4.30184 4.35829 4.55634 4.61898 4.68283 4.76608 4.82104 4.89885 4.92072 4.99810 5.07124 5.13459 5.13874 5.18952 5.30283 5.36080 5.38331 5.53618 5.65596 5.66123 5.76635 5.79020 5.83862 5.86292 5.91211 6.00060 6.03274 6.06599 6.53956 6.64895 6.90385 7.03915 7.44471 7.78640 7.99664 8.18012 8.43869 8.75018 8.81097 9.29336 9.63065 10.70656 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018378 B = 0.002118 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.228780 B =13217.381721 C =14091.691201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.623 5.623 3 C 0.064 3.936 4 C 0.518 3.482 5 O -0.536 6.536 6 C -0.107 4.107 7 H 0.093 0.907 8 C -0.114 4.114 9 C -0.116 4.116 10 C -0.133 4.133 11 C 0.167 3.833 12 H 0.093 0.907 13 N -0.742 5.742 14 C 0.706 3.294 15 O -0.597 6.597 16 N -0.726 5.726 17 C 0.126 3.874 18 C 0.439 3.561 19 O -0.580 6.580 20 N -0.577 5.577 21 C -0.310 4.310 22 H 0.121 0.879 23 C 0.045 3.955 24 N -0.875 5.875 25 Si 0.879 3.121 26 H -0.269 1.269 27 H -0.275 1.275 28 H -0.267 1.267 29 C -0.106 4.106 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.393 0.607 43 H 0.407 0.593 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.375 0.625 47 H 0.275 0.725 48 H 0.076 0.924 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.932 -3.973 18.201 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.358 5.358 3 C -0.079 4.079 4 C 0.306 3.694 5 O -0.412 6.412 6 C -0.128 4.128 7 H 0.111 0.889 8 C -0.151 4.151 9 C -0.154 4.154 10 C -0.172 4.172 11 C 0.061 3.939 12 H 0.111 0.889 13 N -0.399 5.399 14 C 0.406 3.594 15 O -0.476 6.476 16 N -0.383 5.383 17 C -0.002 4.002 18 C 0.225 3.775 19 O -0.465 6.465 20 N -0.214 5.214 21 C -0.438 4.438 22 H 0.139 0.861 23 C -0.159 4.159 24 N -0.514 5.514 25 Si 0.705 3.295 26 H -0.194 1.194 27 H -0.200 1.200 28 H -0.192 1.192 29 C -0.145 4.145 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.227 0.773 43 H 0.244 0.756 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.208 0.792 47 H 0.086 0.914 48 H 0.094 0.906 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.016 -4.704 18.160 27.433 hybrid contribution 0.635 0.023 -0.217 0.671 sum -19.382 -4.681 17.943 26.824 Atomic orbital electron populations 1.21633 0.79164 1.02249 1.02348 1.47774 1.07072 1.06560 1.74352 1.22160 0.98022 0.85010 1.02663 1.20709 0.90062 0.83000 0.75591 1.90704 1.70450 1.31191 1.48867 1.21350 0.91355 1.00218 0.99878 0.88877 1.21686 0.97158 1.01754 0.94516 1.21491 0.93917 0.97827 1.02117 1.21978 1.02060 0.96702 0.96475 1.20774 0.91727 0.94064 0.87304 0.88850 1.45202 1.14114 1.33349 1.47201 1.15860 0.81674 0.82471 0.79443 1.90900 1.60418 1.33428 1.62845 1.44759 1.16046 1.32229 1.45314 1.20789 0.83197 0.98754 0.97481 1.19673 0.83780 0.88286 0.85796 1.90527 1.48323 1.41375 1.66227 1.42122 1.12667 1.27575 1.39067 1.19432 1.00868 1.06755 1.16771 0.86111 1.25071 0.97356 0.97286 0.96233 1.69613 1.22798 1.32169 1.26773 0.86671 0.81900 0.81878 0.79052 1.19383 1.19998 1.19190 1.21671 0.93662 0.95167 1.03969 0.92237 0.90684 0.92070 0.92101 0.90656 0.89977 0.91119 0.90873 0.91467 0.91418 0.91029 0.90809 0.77286 0.75605 0.89925 0.89928 0.79225 0.91390 0.90553 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.17 59.84 0.61 1.16 16 2 N -0.62 -4.47 3.27 -189.51 -0.62 -5.09 16 3 C 0.06 0.27 9.84 59.85 0.59 0.86 16 4 C 0.52 4.89 6.93 -10.99 -0.08 4.81 16 5 O -0.54 -7.07 15.99 5.55 0.09 -6.98 16 6 C -0.11 -0.78 1.54 -91.77 -0.14 -0.92 16 7 H 0.09 0.58 6.04 -51.93 -0.31 0.27 16 8 C -0.11 -0.69 4.90 -26.73 -0.13 -0.82 16 9 C -0.12 -0.81 5.77 -26.73 -0.15 -0.96 16 10 C -0.13 -1.16 5.60 -26.73 -0.15 -1.31 16 11 C 0.17 1.61 2.78 -67.93 -0.19 1.42 16 12 H 0.09 1.07 7.58 -51.92 -0.39 0.68 16 13 N -0.74 -7.96 4.24 -58.68 -0.25 -8.21 16 14 C 0.71 10.48 8.53 -86.92 -0.74 9.74 16 15 O -0.60 -10.79 16.01 5.29 0.08 -10.71 16 16 N -0.73 -11.25 5.53 -66.42 -0.37 -11.62 16 17 C 0.13 2.17 6.15 -5.19 -0.03 2.14 16 18 C 0.44 9.50 7.85 -10.98 -0.09 9.41 16 19 O -0.58 -14.35 15.24 5.55 0.08 -14.27 16 20 N -0.58 -13.28 5.09 -10.96 -0.06 -13.33 16 21 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 22 H 0.12 3.75 7.39 -52.48 -0.39 3.37 16 23 C 0.04 1.19 5.50 -17.47 -0.10 1.10 16 24 N -0.87 -24.82 13.96 55.50 0.77 -24.05 16 25 Si 0.88 18.91 27.74 -169.99 -4.71 14.20 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 28 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 29 C -0.11 -0.91 4.24 -26.73 -0.11 -1.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.27 7.71 -51.93 -0.40 -0.13 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.20 7.78 -51.93 -0.40 -0.20 16 35 H 0.08 0.30 4.36 -51.93 -0.23 0.07 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.35 5.45 -51.93 -0.28 0.07 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.51 7.60 -51.93 -0.39 0.12 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.39 3.43 6.88 -40.82 -0.28 3.15 16 43 H 0.41 6.13 7.45 -40.82 -0.30 5.82 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 46 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 47 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.09 0.79 7.99 -51.93 -0.42 0.37 16 LS Contribution 389.49 15.07 5.87 5.87 Total: -1.00 -35.13 389.49 -7.40 -42.53 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -7.43 Total: 14.67 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: -0.86 Total: 16.99 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -0.52 Total: -62.29 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: 0.26 Total: -31.96 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.20 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.13 -7.40 -42.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358275811.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.197 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds