Wall clock time and date at job start Sat Apr 11 2020 06:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47411 * 89.99586 * 9 7 5 11 11 H 1.48497 * 109.47183 * 209.99666 * 9 7 5 12 12 H 1.48503 * 109.46948 * 330.00085 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.47484 * 110.99773 * 74.03073 * 16 15 13 18 18 C 1.53516 * 87.93162 * 138.70049 * 17 16 15 19 19 C 1.52999 * 114.17147 * 220.32406 * 18 17 16 20 20 N 1.46493 * 109.47321 * 268.84237 * 19 18 17 21 21 C 1.34778 * 120.00049 * 179.97438 * 20 19 18 22 22 O 1.21283 * 119.99942 * 0.02562 * 21 20 19 23 23 C 1.50699 * 119.99924 * 180.02562 * 21 20 19 24 24 C 1.50710 * 109.47116 * 180.02562 * 23 21 20 25 25 N 1.34767 * 120.00080 * 179.97438 * 24 23 21 26 26 O 1.21275 * 119.99457 * 359.97438 * 24 23 21 27 27 C 1.47482 * 110.99764 * 169.99672 * 16 15 13 28 28 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 30 30 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 31 31 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 32 32 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 33 33 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 34 34 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 35 35 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 37 37 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 38 38 H 1.09002 * 113.46980 * 253.46672 * 17 16 15 39 39 H 1.08997 * 113.47937 * 23.93233 * 17 16 15 40 40 H 1.09000 * 114.34380 * 87.63201 * 18 17 16 41 41 H 1.09011 * 109.46740 * 28.84227 * 19 18 17 42 42 H 1.08998 * 109.46933 * 148.83709 * 19 18 17 43 43 H 0.96999 * 120.00445 * 0.02562 * 20 19 18 44 44 H 1.08997 * 109.47156 * 299.99870 * 23 21 20 45 45 H 1.08998 * 109.47760 * 60.00034 * 23 21 20 46 46 H 0.97000 * 120.00363 * 359.97438 * 25 24 23 47 47 H 0.96997 * 119.99997 * 180.02562 * 25 24 23 48 48 H 1.08999 * 113.47954 * 336.06479 * 27 16 15 49 49 H 1.09004 * 113.47420 * 106.52893 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 5.9761 0.8743 -4.2601 11 1 6.3923 3.2626 -4.2008 12 1 6.7735 1.9157 -2.2204 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 1.2733 3.2423 3.7449 18 6 1.3822 3.0440 5.2633 19 6 0.0396 3.0707 5.9964 20 7 -0.2558 4.4402 6.4245 21 6 -1.3952 4.7062 7.0936 22 8 -2.1756 3.8116 7.3418 23 6 -1.6993 6.1151 7.5334 24 6 -3.0218 6.1415 8.2557 25 7 -3.5006 7.3033 8.7426 26 8 -3.6550 5.1171 8.3987 27 6 1.8567 1.6375 4.8718 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 3.6747 3.5148 -4.4447 36 1 0.9443 1.0114 2.5302 37 1 2.6227 0.4186 2.5299 38 1 1.5927 4.2299 3.4119 39 1 0.3049 2.9522 3.3374 40 1 2.1466 3.6555 5.7426 41 1 -0.7469 2.7216 5.3272 42 1 0.0893 2.4199 6.8694 43 1 0.3681 5.1558 6.2257 44 1 -0.9132 6.4645 8.2027 45 1 -1.7488 6.7657 6.6603 46 1 -2.9940 8.1226 8.6285 47 1 -4.3516 7.3202 9.2078 48 1 1.0440 0.9191 4.7651 49 1 2.6705 1.2649 5.4939 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753399113.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:38 Heat of formation + Delta-G solvation = -102.961921 kcal Electronic energy + Delta-G solvation = -29302.405860 eV Core-core repulsion = 25071.438494 eV Total energy + Delta-G solvation = -4230.967366 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.72067 -41.10868 -40.11062 -39.35751 -36.90543 -35.77225 -34.92919 -34.58877 -32.65194 -31.64837 -31.17731 -29.36204 -27.82278 -26.88651 -25.25537 -24.37772 -23.40008 -22.39544 -21.35347 -20.50727 -19.88776 -18.63882 -18.51221 -18.17389 -17.97692 -17.44003 -17.14650 -16.93967 -16.79232 -16.50388 -16.19784 -16.18229 -15.60476 -15.31130 -15.12756 -14.73052 -14.53347 -14.41493 -14.26401 -14.21404 -13.78820 -13.62086 -13.47818 -13.25606 -13.13440 -12.98985 -12.85774 -12.67054 -12.54305 -12.29819 -12.19349 -12.00719 -11.76449 -11.70128 -11.50665 -11.21900 -10.64823 -10.55862 -10.53565 -10.51984 -10.04432 -9.81469 -9.41743 -8.22832 -6.37719 1.35526 1.38602 1.49133 1.67134 1.78617 1.85697 2.03190 2.25955 2.41452 2.82531 3.04928 3.06531 3.34245 3.64283 3.70724 3.76190 4.06399 4.14875 4.18188 4.23632 4.31910 4.35917 4.41926 4.42796 4.47122 4.52347 4.60389 4.62794 4.73959 4.84683 4.88702 4.92631 4.96538 5.03753 5.20201 5.23144 5.32508 5.35995 5.52350 5.57561 5.84696 5.97793 5.99442 6.06584 6.53900 6.63646 6.70390 6.82278 7.28529 7.34141 7.50588 7.52515 8.84067 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.001864 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.581541 B =15016.060805 C =15302.358061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.273 1.273 13 C 0.496 3.504 14 O -0.582 6.582 15 C 0.015 3.985 16 N -0.480 5.480 17 C 0.008 3.992 18 C -0.103 4.103 19 C 0.138 3.862 20 N -0.718 5.718 21 C 0.501 3.499 22 O -0.560 6.560 23 C -0.157 4.157 24 C 0.506 3.494 25 N -0.838 5.838 26 O -0.571 6.571 27 C 0.012 3.988 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.020 0.980 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.124 0.876 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.417 0.583 44 H 0.165 0.835 45 H 0.159 0.841 46 H 0.420 0.580 47 H 0.405 0.595 48 H 0.088 0.912 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.524 3.852 24.843 26.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.581 4.581 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.285 3.715 14 O -0.461 6.461 15 C -0.116 4.116 16 N -0.203 5.203 17 C -0.121 4.121 18 C -0.122 4.122 19 C 0.013 3.987 20 N -0.372 5.372 21 C 0.287 3.713 22 O -0.437 6.437 23 C -0.199 4.199 24 C 0.290 3.710 25 N -0.403 5.403 26 O -0.448 6.448 27 C -0.117 4.117 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.038 0.962 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.138 0.862 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.141 0.859 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.255 0.745 44 H 0.183 0.817 45 H 0.177 0.823 46 H 0.252 0.748 47 H 0.236 0.764 48 H 0.106 0.894 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.436 3.297 24.684 26.293 hybrid contribution 0.077 0.564 -1.047 1.192 sum -8.359 3.861 23.636 25.367 Atomic orbital electron populations 1.22149 0.94718 1.03475 1.01487 1.21734 0.95149 0.81468 1.03926 1.48300 1.64196 1.15101 1.06246 1.18654 0.95197 0.91404 0.80454 1.21712 0.97906 1.31959 1.06480 0.92982 1.25876 1.02472 0.94475 0.96448 1.70055 1.37777 1.34271 1.14741 0.85402 0.78929 0.78219 0.78172 1.18777 1.20572 1.19833 1.21145 0.77422 0.86719 0.86255 1.90625 1.47128 1.20506 1.87871 1.22638 1.02731 0.97198 0.89034 1.68873 1.41473 1.08524 1.01400 1.23840 0.93997 0.98106 0.96127 1.22862 0.97049 0.98711 0.93581 1.21194 0.95013 0.83889 0.98576 1.45884 1.22433 1.11127 1.57785 1.20744 0.81063 0.91516 0.77946 1.90861 1.48334 1.48894 1.55633 1.21665 0.97436 0.95447 1.05361 1.20600 0.87865 0.83588 0.78932 1.43700 1.26519 1.10015 1.60105 1.90902 1.60847 1.34760 1.58325 1.23931 1.00756 0.96126 0.90870 0.88591 0.92411 0.94370 0.90998 0.88189 0.96222 0.98724 0.92424 0.89047 0.86244 0.91491 0.91774 0.85851 0.92797 0.90891 0.74529 0.81714 0.82346 0.74804 0.76361 0.89393 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 10.24 71.98 0.74 -3.24 16 2 C 0.10 3.03 5.93 86.38 0.51 3.54 16 3 N -0.61 -25.90 2.46 -826.16 -2.03 -27.93 16 4 C 0.26 14.53 5.16 85.64 0.44 14.97 16 5 C -0.54 -31.80 9.39 25.60 0.24 -31.56 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 9 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.50 20.77 7.51 87.66 0.66 21.43 16 14 O -0.58 -30.45 15.34 -3.03 -0.05 -30.50 16 15 C 0.02 0.42 3.86 85.56 0.33 0.75 16 16 N -0.48 -12.82 6.06 -932.44 -5.65 -18.48 16 17 C 0.01 0.20 6.28 83.57 0.53 0.73 16 18 C -0.10 -1.60 4.09 -10.45 -0.04 -1.65 16 19 C 0.14 2.20 5.58 86.38 0.48 2.68 16 20 N -0.72 -9.53 5.56 -463.06 -2.57 -12.10 16 21 C 0.50 9.30 7.82 87.66 0.69 9.99 16 22 O -0.56 -17.66 14.18 20.40 0.29 -17.37 16 23 C -0.16 -1.23 6.19 29.10 0.18 -1.05 16 24 C 0.51 7.98 8.09 87.66 0.71 8.69 16 25 N -0.84 -4.82 8.87 -173.54 -1.54 -6.36 16 26 O -0.57 -17.29 15.02 20.43 0.31 -16.98 16 27 C 0.01 0.20 7.29 83.57 0.61 0.81 16 28 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 2.34 8.07 -2.38 -0.02 2.32 16 32 H 0.10 2.31 6.44 -2.39 -0.02 2.29 16 33 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 34 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.09 2.03 6.61 -2.39 -0.02 2.02 16 37 H 0.12 2.86 7.40 -2.39 -0.02 2.84 16 38 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 39 H 0.06 1.57 7.43 -2.39 -0.02 1.55 16 40 H 0.12 1.63 8.14 -2.39 -0.02 1.62 16 41 H 0.05 1.06 7.81 -2.38 -0.02 1.04 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.42 2.82 8.47 -92.71 -0.79 2.04 16 44 H 0.17 -0.11 8.14 -2.39 -0.02 -0.13 16 45 H 0.16 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.42 -1.07 8.83 -92.71 -0.82 -1.89 16 47 H 0.41 2.36 8.93 -92.71 -0.83 1.53 16 48 H 0.09 1.21 7.73 -2.39 -0.02 1.19 16 49 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -99.55 406.22 -3.84 -103.39 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -1.44 Total: 8.48 kcal Atomic # 6 Polarization: 20.36 SS G_CDS: 6.53 Total: 26.89 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -11.51 Total: -121.41 kcal Atomic # 8 Polarization: -65.40 SS G_CDS: 0.55 Total: -64.85 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -99.55 -3.84 -103.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753399113.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.424 kcal (2) G-P(sol) polarization free energy of solvation -99.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds