Wall clock time and date at job start Sat Apr 11 2020 06:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 119.99988 * 2 1 4 4 N 1.34777 * 119.99963 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99979 * 179.97438 * 4 2 1 6 6 C 1.50697 * 109.46997 * 179.97438 * 5 4 2 7 7 O 1.21275 * 120.00322 * 0.02562 * 6 5 4 8 8 N 1.34784 * 120.00000 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00030 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47010 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00164 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99963 * 180.02562 * 10 9 8 13 13 C 1.46932 * 120.62883 * 180.02562 * 12 10 9 14 14 C 1.53192 * 108.77844 * 126.36628 * 13 12 10 15 15 C 1.53045 * 109.30943 * 54.63390 * 14 13 12 16 16 C 1.53003 * 109.45779 * 178.62811 * 15 14 13 17 17 N 1.46490 * 109.46384 * 58.65283 * 15 14 13 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46685 * 269.99637 * 22 20 18 24 24 H 1.48494 * 109.47357 * 29.99716 * 22 20 18 25 25 H 1.48502 * 109.47120 * 150.00435 * 22 20 18 26 26 C 1.53044 * 109.52582 * 298.63661 * 15 14 13 27 27 C 1.46920 * 120.63159 * 359.96999 * 12 10 9 28 28 H 1.09003 * 109.47086 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46979 * 299.99113 * 1 2 3 30 30 H 1.09002 * 109.47279 * 59.99669 * 1 2 3 31 31 H 0.97003 * 120.00025 * 359.97438 * 4 2 1 32 32 H 1.08998 * 109.47252 * 60.00071 * 5 4 2 33 33 H 1.08997 * 109.47071 * 299.99672 * 5 4 2 34 34 H 0.97003 * 119.99699 * 0.02562 * 8 6 5 35 35 H 1.08994 * 109.47518 * 60.00166 * 9 8 6 36 36 H 1.09009 * 109.46985 * 299.99341 * 9 8 6 37 37 H 1.08996 * 109.58846 * 6.57565 * 13 12 10 38 38 H 1.09005 * 109.69444 * 246.22254 * 13 12 10 39 39 H 1.08995 * 109.49437 * 294.68286 * 14 13 12 40 40 H 1.08996 * 109.52274 * 174.59662 * 14 13 12 41 41 H 1.08997 * 109.46965 * 300.02851 * 16 15 14 42 42 H 1.09002 * 109.46920 * 60.02578 * 16 15 14 43 43 H 1.08994 * 109.46997 * 180.02562 * 16 15 14 44 44 H 0.97000 * 120.00577 * 359.97352 * 17 15 14 45 45 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 46 46 H 1.09000 * 109.49970 * 181.31217 * 26 15 14 47 47 H 1.09001 * 109.50257 * 301.41366 * 26 15 14 48 48 H 1.08998 * 109.58779 * 353.42447 * 27 12 10 49 49 H 1.09004 * 109.58787 * 113.70161 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1482 -2.5880 -0.0010 7 8 3.3601 -3.5098 -0.0009 8 7 5.4733 -2.8343 -0.0019 9 6 5.9616 -4.2155 -0.0024 10 6 7.4686 -4.2155 -0.0029 11 8 8.0751 -3.1652 -0.0023 12 7 8.1425 -5.3827 -0.0038 13 6 9.6117 -5.3988 -0.0037 14 6 10.0953 -6.2652 1.1635 15 6 9.4515 -7.6503 1.0663 16 6 9.9586 -8.5295 2.2112 17 7 9.8066 -8.2648 -0.2152 18 6 9.3423 -9.5147 -0.5271 19 1 8.7140 -10.0473 0.1714 20 6 9.6792 -10.0974 -1.7412 21 7 10.4454 -9.4485 -2.5924 22 14 9.0452 -11.8021 -2.1670 23 1 10.0131 -12.8231 -1.6915 24 1 7.7320 -12.0205 -1.5091 25 1 8.8868 -11.9180 -3.6390 26 6 7.9301 -7.5151 1.1627 27 6 7.4220 -6.6631 -0.0038 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 1.6959 -2.0073 -0.0005 32 1 4.0096 -0.6536 0.8889 33 1 4.0089 -0.6532 -0.8911 34 1 6.1037 -2.0970 -0.0024 35 1 5.5977 -4.7293 -0.8921 36 1 5.5990 -4.7294 0.8880 37 1 9.9883 -4.3829 0.1148 38 1 9.9746 -5.8158 -0.9432 39 1 9.8112 -5.7972 2.1059 40 1 11.1798 -6.3643 1.1187 41 1 11.0421 -8.6262 2.1425 42 1 9.6944 -8.0723 3.1648 43 1 9.5006 -9.5161 2.1419 44 1 10.3706 -7.7864 -0.8428 45 1 10.7743 -8.5631 -2.3714 46 1 7.4733 -8.5037 1.1169 47 1 7.6664 -7.0353 2.1053 48 1 6.3538 -6.4813 0.1147 49 1 7.6018 -7.1836 -0.9445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755130283.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:59 Heat of formation + Delta-G solvation = -94.189807 kcal Electronic energy + Delta-G solvation = -29975.215563 eV Core-core repulsion = 25744.628584 eV Total energy + Delta-G solvation = -4230.586979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.75599 -40.15151 -39.31874 -38.07144 -35.07629 -34.82780 -34.63556 -32.72127 -31.27981 -30.87788 -29.25896 -28.68302 -27.79279 -26.30359 -23.84639 -23.10253 -22.72337 -21.06902 -20.97939 -20.05568 -18.73707 -18.04939 -17.14976 -17.10620 -16.94041 -16.53798 -16.25513 -15.87188 -15.86014 -15.21006 -15.04438 -14.82155 -14.26264 -14.02337 -13.86353 -13.73226 -13.61915 -13.52866 -13.26040 -13.10309 -12.98588 -12.70722 -12.57554 -12.33380 -12.29208 -11.68805 -11.48948 -11.37558 -10.92564 -10.84962 -10.64724 -10.46061 -10.38859 -10.36948 -10.06449 -10.00861 -9.82163 -9.65945 -9.50472 -9.16661 -9.02422 -8.48059 -7.11141 -6.15393 -3.16833 2.11505 2.24561 2.29701 2.48709 2.92279 3.23587 3.46658 3.50119 3.64152 4.20653 4.32663 4.47491 4.59588 4.78462 4.85258 4.96568 5.00841 5.02157 5.08118 5.13893 5.14955 5.21630 5.39011 5.39895 5.45055 5.58849 5.61048 5.80578 5.86328 5.87378 5.92627 5.96237 6.07216 6.23067 6.26127 6.34340 6.41972 6.52905 6.67040 6.83927 6.91795 7.03286 7.08144 7.43105 7.71003 7.75348 7.79211 8.03196 8.68833 9.14489 10.01228 10.16506 11.32111 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.002124 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.801765 B =13176.877772 C =13962.011192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.719 5.719 5 C 0.100 3.900 6 C 0.512 3.488 7 O -0.539 6.539 8 N -0.710 5.710 9 C 0.101 3.899 10 C 0.507 3.493 11 O -0.553 6.553 12 N -0.591 5.591 13 C 0.117 3.883 14 C -0.131 4.131 15 C 0.202 3.798 16 C -0.149 4.149 17 N -0.728 5.728 18 C -0.324 4.324 19 H 0.066 0.934 20 C -0.044 4.044 21 N -0.943 5.943 22 Si 1.078 2.922 23 H -0.297 1.297 24 H -0.295 1.295 25 H -0.289 1.289 26 C -0.134 4.134 27 C 0.111 3.889 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.413 0.587 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.415 0.585 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.036 0.964 43 H 0.057 0.943 44 H 0.366 0.634 45 H 0.254 0.746 46 H 0.079 0.921 47 H 0.050 0.950 48 H 0.071 0.929 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.278 13.834 7.832 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.300 3.700 3 O -0.427 6.427 4 N -0.375 5.375 5 C -0.028 4.028 6 C 0.297 3.703 7 O -0.416 6.416 8 N -0.365 5.365 9 C -0.026 4.026 10 C 0.294 3.706 11 O -0.433 6.433 12 N -0.323 5.323 13 C -0.005 4.005 14 C -0.169 4.169 15 C 0.111 3.889 16 C -0.208 4.208 17 N -0.371 5.371 18 C -0.455 4.455 19 H 0.084 0.916 20 C -0.242 4.242 21 N -0.589 5.589 22 Si 0.909 3.091 23 H -0.225 1.225 24 H -0.222 1.222 25 H -0.215 1.215 26 C -0.174 4.174 27 C -0.011 4.011 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.251 0.749 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.253 0.747 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.201 0.799 45 H 0.066 0.934 46 H 0.097 0.903 47 H 0.068 0.932 48 H 0.089 0.911 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.196 13.108 6.791 20.481 hybrid contribution 0.355 0.896 1.054 1.428 sum -13.841 14.004 7.846 21.195 Atomic orbital electron populations 1.21831 0.91019 1.04561 1.05469 1.20861 0.90826 0.82974 0.75313 1.90743 1.70748 1.31403 1.49809 1.45884 1.05873 1.10089 1.75683 1.21025 0.82572 0.93888 1.05305 1.20469 0.82352 0.91262 0.76176 1.90719 1.55139 1.45863 1.49903 1.45610 1.07123 1.09019 1.74762 1.21155 0.91949 0.84392 1.05085 1.20327 0.89421 0.83997 0.76813 1.90661 1.69774 1.30953 1.51890 1.48059 1.07553 1.05860 1.70797 1.21593 0.78446 1.00942 0.99558 1.22112 1.00866 0.96019 0.97921 1.19469 0.91505 0.90121 0.87836 1.22193 1.01063 1.00749 0.96819 1.42514 1.60884 1.18064 1.15679 1.19932 1.28587 0.93744 1.03263 0.91642 1.25668 0.99901 1.05476 0.93150 1.70868 1.36294 1.14401 1.37318 0.83251 0.75067 0.74765 0.75989 1.22470 1.22188 1.21524 1.22281 0.99196 0.99947 0.95994 1.21840 0.94447 0.82816 1.02012 0.90296 0.88524 0.88509 0.74854 0.88033 0.87992 0.74669 0.87998 0.88103 0.89608 0.90702 0.91712 0.90727 0.93230 0.94523 0.92390 0.79948 0.93421 0.90289 0.93173 0.91052 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.39 36.01 0.37 -0.42 16 2 C 0.51 4.49 7.94 -10.99 -0.09 4.40 16 3 O -0.55 -7.07 17.10 5.56 0.10 -6.97 16 4 N -0.72 -5.76 5.53 -61.47 -0.34 -6.10 16 5 C 0.10 0.81 6.15 -5.19 -0.03 0.78 16 6 C 0.51 5.08 7.90 -10.98 -0.09 5.00 16 7 O -0.54 -6.76 15.67 5.56 0.09 -6.67 16 8 N -0.71 -7.08 5.53 -61.48 -0.34 -7.42 16 9 C 0.10 1.13 4.50 -5.20 -0.02 1.10 16 10 C 0.51 6.97 7.77 -10.99 -0.09 6.88 16 11 O -0.55 -8.75 15.08 5.55 0.08 -8.67 16 12 N -0.59 -8.55 2.97 -172.80 -0.51 -9.07 16 13 C 0.12 1.78 6.16 -3.71 -0.02 1.75 16 14 C -0.13 -1.95 4.96 -26.61 -0.13 -2.08 16 15 C 0.20 3.47 0.74 -131.78 -0.10 3.38 16 16 C -0.15 -2.50 8.44 37.16 0.31 -2.19 16 17 N -0.73 -15.67 4.14 -47.19 -0.20 -15.86 16 18 C -0.32 -8.04 8.68 -15.06 -0.13 -8.17 16 19 H 0.07 1.61 6.70 -52.49 -0.35 1.26 16 20 C -0.04 -1.19 5.50 -17.43 -0.10 -1.28 16 21 N -0.94 -27.38 13.70 55.49 0.76 -26.62 16 22 Si 1.08 24.62 29.92 -169.99 -5.09 19.54 16 23 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.30 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 C -0.13 -2.08 4.70 -26.64 -0.13 -2.20 16 27 C 0.11 1.63 6.08 -3.75 -0.02 1.61 16 28 H 0.08 0.23 7.91 -51.93 -0.41 -0.19 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.41 2.98 7.27 -40.82 -0.30 2.69 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.42 3.89 7.44 -40.82 -0.30 3.59 16 35 H 0.10 1.13 7.94 -51.93 -0.41 0.71 16 36 H 0.10 1.06 7.69 -51.92 -0.40 0.66 16 37 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 38 H 0.07 1.26 6.94 -51.93 -0.36 0.90 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 1.06 7.27 -51.93 -0.38 0.68 16 44 H 0.37 8.38 5.30 -40.82 -0.22 8.17 16 45 H 0.25 7.25 6.77 -40.82 -0.28 6.98 16 46 H 0.08 1.33 7.31 -51.93 -0.38 0.95 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 49 H 0.09 1.67 7.75 -51.93 -0.40 1.26 16 LS Contribution 393.37 15.07 5.93 5.93 Total: -1.00 -33.07 393.37 -7.23 -40.30 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -7.46 Total: 13.08 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -0.25 Total: 8.55 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -0.63 Total: -65.08 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: 0.27 Total: -22.32 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.09 Total: 19.54 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.07 -7.23 -40.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755130283.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.887 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds