Wall clock time and date at job start Sat Apr 11 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 119.99988 * 2 1 4 4 N 1.34777 * 119.99963 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99979 * 179.97438 * 4 2 1 6 6 C 1.50697 * 109.46997 * 179.97438 * 5 4 2 7 7 O 1.21275 * 120.00322 * 0.02562 * 6 5 4 8 8 N 1.34784 * 120.00000 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00030 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47010 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00164 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99963 * 180.02562 * 10 9 8 13 13 C 1.46932 * 120.62883 * 180.02562 * 12 10 9 14 14 C 1.53192 * 108.77844 * 126.36628 * 13 12 10 15 15 C 1.53045 * 109.30943 * 54.63390 * 14 13 12 16 16 C 1.53003 * 109.45779 * 178.62811 * 15 14 13 17 17 N 1.46490 * 109.46384 * 58.65283 * 15 14 13 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46685 * 269.99637 * 22 20 18 24 24 H 1.48494 * 109.47357 * 29.99716 * 22 20 18 25 25 H 1.48502 * 109.47120 * 150.00435 * 22 20 18 26 26 C 1.53044 * 109.52582 * 298.63661 * 15 14 13 27 27 C 1.46920 * 120.63159 * 359.96999 * 12 10 9 28 28 H 1.09003 * 109.47086 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46979 * 299.99113 * 1 2 3 30 30 H 1.09002 * 109.47279 * 59.99669 * 1 2 3 31 31 H 0.97003 * 120.00025 * 359.97438 * 4 2 1 32 32 H 1.08998 * 109.47252 * 60.00071 * 5 4 2 33 33 H 1.08997 * 109.47071 * 299.99672 * 5 4 2 34 34 H 0.97003 * 119.99699 * 0.02562 * 8 6 5 35 35 H 1.08994 * 109.47518 * 60.00166 * 9 8 6 36 36 H 1.09009 * 109.46985 * 299.99341 * 9 8 6 37 37 H 1.08996 * 109.58846 * 6.57565 * 13 12 10 38 38 H 1.09005 * 109.69444 * 246.22254 * 13 12 10 39 39 H 1.08995 * 109.49437 * 294.68286 * 14 13 12 40 40 H 1.08996 * 109.52274 * 174.59662 * 14 13 12 41 41 H 1.08997 * 109.46965 * 300.02851 * 16 15 14 42 42 H 1.09002 * 109.46920 * 60.02578 * 16 15 14 43 43 H 1.08994 * 109.46997 * 180.02562 * 16 15 14 44 44 H 0.97000 * 120.00577 * 359.97352 * 17 15 14 45 45 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 46 46 H 1.09000 * 109.49970 * 181.31217 * 26 15 14 47 47 H 1.09001 * 109.50257 * 301.41366 * 26 15 14 48 48 H 1.08998 * 109.58779 * 353.42447 * 27 12 10 49 49 H 1.09004 * 109.58787 * 113.70161 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1482 -2.5880 -0.0010 7 8 3.3601 -3.5098 -0.0009 8 7 5.4733 -2.8343 -0.0019 9 6 5.9616 -4.2155 -0.0024 10 6 7.4686 -4.2155 -0.0029 11 8 8.0751 -3.1652 -0.0023 12 7 8.1425 -5.3827 -0.0038 13 6 9.6117 -5.3988 -0.0037 14 6 10.0953 -6.2652 1.1635 15 6 9.4515 -7.6503 1.0663 16 6 9.9586 -8.5295 2.2112 17 7 9.8066 -8.2648 -0.2152 18 6 9.3423 -9.5147 -0.5271 19 1 8.7140 -10.0473 0.1714 20 6 9.6792 -10.0974 -1.7412 21 7 10.4454 -9.4485 -2.5924 22 14 9.0452 -11.8021 -2.1670 23 1 10.0131 -12.8231 -1.6915 24 1 7.7320 -12.0205 -1.5091 25 1 8.8868 -11.9180 -3.6390 26 6 7.9301 -7.5151 1.1627 27 6 7.4220 -6.6631 -0.0038 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 1.6959 -2.0073 -0.0005 32 1 4.0096 -0.6536 0.8889 33 1 4.0089 -0.6532 -0.8911 34 1 6.1037 -2.0970 -0.0024 35 1 5.5977 -4.7293 -0.8921 36 1 5.5990 -4.7294 0.8880 37 1 9.9883 -4.3829 0.1148 38 1 9.9746 -5.8158 -0.9432 39 1 9.8112 -5.7972 2.1059 40 1 11.1798 -6.3643 1.1187 41 1 11.0421 -8.6262 2.1425 42 1 9.6944 -8.0723 3.1648 43 1 9.5006 -9.5161 2.1419 44 1 10.3706 -7.7864 -0.8428 45 1 10.7743 -8.5631 -2.3714 46 1 7.4733 -8.5037 1.1169 47 1 7.6664 -7.0353 2.1053 48 1 6.3538 -6.4813 0.1147 49 1 7.6018 -7.1836 -0.9445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755130283.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:58 Heat of formation + Delta-G solvation = -119.757351 kcal Electronic energy + Delta-G solvation = -29976.324255 eV Core-core repulsion = 25744.628584 eV Total energy + Delta-G solvation = -4231.695671 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74481 -41.09582 -40.16553 -39.34754 -36.30522 -35.86704 -35.45677 -34.42946 -32.43278 -31.54669 -30.64594 -29.94793 -28.91657 -27.13786 -25.69461 -24.35403 -24.02235 -21.87260 -21.66547 -21.26789 -19.99682 -19.12735 -18.79992 -18.10048 -17.79935 -17.39005 -17.16698 -16.93840 -16.74143 -16.48046 -16.04443 -15.90986 -15.72903 -15.35380 -15.06144 -14.90396 -14.86973 -14.41663 -14.18679 -14.10457 -14.06453 -13.56684 -13.49250 -13.29792 -13.24891 -12.91803 -12.80666 -12.72306 -12.62219 -12.26976 -12.16192 -11.88906 -11.76533 -11.48218 -11.30950 -11.11533 -11.05939 -10.94406 -10.81053 -10.45153 -10.25009 -9.75102 -8.97972 -8.23813 -5.17834 1.31354 1.39477 1.45998 1.58526 1.61534 1.70068 1.83225 2.00863 2.44981 2.76715 3.23173 3.48246 3.51729 3.68620 3.86993 3.90581 3.94429 4.07378 4.16706 4.20621 4.24854 4.27843 4.32616 4.35078 4.52707 4.56291 4.60196 4.68175 4.71532 4.78739 4.93452 4.95472 4.99535 5.05545 5.07251 5.10614 5.23137 5.24723 5.29288 5.50045 5.58109 5.77567 6.23963 6.29288 6.46127 6.62551 6.87388 6.93536 7.15237 7.21573 8.12756 8.25106 9.27672 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.002124 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.801765 B =13176.877772 C =13962.011192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.509 3.491 3 O -0.596 6.596 4 N -0.715 5.715 5 C 0.101 3.899 6 C 0.519 3.481 7 O -0.564 6.564 8 N -0.707 5.707 9 C 0.107 3.893 10 C 0.510 3.490 11 O -0.573 6.573 12 N -0.593 5.593 13 C 0.120 3.880 14 C -0.120 4.120 15 C 0.190 3.810 16 C -0.143 4.143 17 N -0.735 5.735 18 C -0.296 4.296 19 H 0.070 0.930 20 C -0.110 4.110 21 N -0.984 5.984 22 Si 1.118 2.882 23 H -0.294 1.294 24 H -0.271 1.271 25 H -0.303 1.303 26 C -0.129 4.129 27 C 0.118 3.882 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.419 0.581 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.419 0.581 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.068 0.932 43 H 0.039 0.961 44 H 0.357 0.643 45 H 0.243 0.757 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.104 0.896 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.339 14.283 9.711 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.298 3.702 3 O -0.477 6.477 4 N -0.371 5.371 5 C -0.026 4.026 6 C 0.306 3.694 7 O -0.443 6.443 8 N -0.362 5.362 9 C -0.020 4.020 10 C 0.299 3.701 11 O -0.454 6.454 12 N -0.324 5.324 13 C -0.003 4.003 14 C -0.159 4.159 15 C 0.101 3.899 16 C -0.202 4.202 17 N -0.377 5.377 18 C -0.428 4.428 19 H 0.087 0.913 20 C -0.301 4.301 21 N -0.634 5.634 22 Si 0.946 3.054 23 H -0.222 1.222 24 H -0.196 1.196 25 H -0.230 1.230 26 C -0.169 4.169 27 C -0.004 4.004 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.258 0.742 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.258 0.742 35 H 0.124 0.876 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.189 0.811 45 H 0.053 0.947 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.122 0.878 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.288 13.554 8.733 22.919 hybrid contribution 1.000 0.821 0.557 1.409 sum -15.288 14.375 9.290 22.950 Atomic orbital electron populations 1.21877 0.87810 1.06307 1.06268 1.21584 0.92361 0.82208 0.74019 1.90721 1.71966 1.32921 1.52139 1.45936 1.05843 1.10287 1.75003 1.21047 0.82884 0.92687 1.06026 1.20649 0.81923 0.91580 0.75273 1.90710 1.55656 1.46734 1.51156 1.45589 1.07303 1.08713 1.74581 1.21118 0.89733 0.85265 1.05923 1.20704 0.90415 0.83213 0.75767 1.90656 1.70539 1.31563 1.52639 1.48045 1.07166 1.06137 1.71059 1.21455 0.79255 1.00944 0.98615 1.22024 1.00656 0.94531 0.98662 1.19820 0.93077 0.91160 0.85869 1.22119 1.00097 0.99902 0.98123 1.42685 1.60553 1.17275 1.17223 1.20173 1.26084 0.94327 1.02211 0.91259 1.26772 1.00951 1.08258 0.94092 1.70967 1.39207 1.14543 1.38673 0.82699 0.75761 0.71856 0.75066 1.22206 1.19617 1.22970 1.22205 0.97283 0.99761 0.97643 1.21710 0.96279 0.82529 0.99877 0.88102 0.87591 0.87697 0.74232 0.87164 0.87422 0.74220 0.87645 0.86624 0.89228 0.93174 0.89492 0.90844 0.94389 0.91288 0.94133 0.81051 0.94661 0.91583 0.90265 0.87817 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 10.39 71.24 0.74 -0.45 16 2 C 0.51 8.24 7.94 87.66 0.70 8.94 16 3 O -0.60 -15.04 17.10 -3.02 -0.05 -15.09 16 4 N -0.71 -10.33 5.53 -466.79 -2.58 -12.91 16 5 C 0.10 1.49 6.15 85.63 0.53 2.02 16 6 C 0.52 9.33 7.90 87.65 0.69 10.02 16 7 O -0.56 -13.00 15.67 -3.02 -0.05 -13.05 16 8 N -0.71 -12.69 5.53 -466.80 -2.58 -15.27 16 9 C 0.11 2.12 4.50 85.63 0.39 2.50 16 10 C 0.51 13.08 7.77 87.66 0.68 13.76 16 11 O -0.57 -17.28 15.08 -3.04 -0.05 -17.32 16 12 N -0.59 -16.30 2.97 -819.02 -2.43 -18.74 16 13 C 0.12 3.58 6.16 86.36 0.53 4.11 16 14 C -0.12 -3.40 4.96 30.67 0.15 -3.24 16 15 C 0.19 6.28 0.74 3.64 0.00 6.28 16 16 C -0.14 -4.54 8.44 71.98 0.61 -3.94 16 17 N -0.73 -31.87 4.14 -303.23 -1.25 -33.12 16 18 C -0.30 -14.70 8.68 84.03 0.73 -13.97 16 19 H 0.07 3.36 6.70 -2.91 -0.02 3.34 16 20 C -0.11 -5.97 5.50 84.86 0.47 -5.50 16 21 N -0.98 -58.95 13.70 21.65 0.30 -58.65 16 22 Si 1.12 50.10 29.92 68.60 2.05 52.15 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 26 C -0.13 -3.70 4.70 30.65 0.14 -3.56 16 27 C 0.12 3.29 6.08 86.34 0.52 3.81 16 28 H 0.10 0.28 7.91 -2.39 -0.02 0.27 16 29 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.42 5.26 7.27 -92.71 -0.67 4.58 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.42 7.13 7.44 -92.71 -0.69 6.44 16 35 H 0.11 2.09 7.94 -2.39 -0.02 2.07 16 36 H 0.12 2.02 7.69 -2.38 -0.02 2.00 16 37 H 0.09 2.61 7.00 -2.39 -0.02 2.60 16 38 H 0.05 1.75 6.94 -2.38 -0.02 1.73 16 39 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.04 1.41 7.27 -2.39 -0.02 1.39 16 44 H 0.36 16.87 5.30 -92.71 -0.49 16.38 16 45 H 0.24 14.47 6.77 -92.71 -0.63 13.84 16 46 H 0.07 2.09 7.31 -2.39 -0.02 2.07 16 47 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.10 2.20 5.93 -2.39 -0.01 2.19 16 49 H 0.06 1.99 7.75 -2.38 -0.02 1.97 16 Total: -1.00 -72.57 393.37 -0.48 -73.05 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -0.71 Total: 38.15 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 6.88 Total: 20.80 kcal Atomic # 7 Polarization: -130.14 SS G_CDS: -8.55 Total: -138.70 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -0.14 Total: -45.46 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.05 Total: 52.15 kcal Total: -72.57 -0.48 -73.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755130283.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.705 kcal (2) G-P(sol) polarization free energy of solvation -72.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds