Wall clock time and date at job start Sat Apr 11 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21282 * 120.00601 * 2 1 4 4 N 1.34774 * 119.99834 * 179.97438 * 2 1 3 5 5 C 1.46509 * 120.00058 * 175.56741 * 4 2 1 6 6 H 1.08999 * 109.47192 * 32.73724 * 5 4 2 7 7 C 1.52998 * 109.47266 * 152.73988 * 5 4 2 8 8 C 1.50705 * 109.47030 * 294.56352 * 7 5 4 9 9 O 1.21279 * 119.99746 * 2.87112 * 8 7 5 10 10 N 1.34774 * 119.99992 * 182.87924 * 8 7 5 11 11 C 1.47429 * 125.64658 * 5.96076 * 10 8 7 12 12 C 1.55131 * 104.71807 * 155.82108 * 11 10 8 13 13 C 1.55162 * 101.48931 * 37.29754 * 12 11 10 14 14 C 1.47025 * 125.65019 * 186.27569 * 10 8 7 15 15 H 1.08994 * 109.87952 * 300.43706 * 14 10 8 16 16 C 1.53008 * 109.87983 * 61.44624 * 14 10 8 17 17 N 1.46496 * 109.46682 * 181.70110 * 16 14 10 18 18 C 1.46503 * 119.99943 * 83.88515 * 17 16 14 19 19 C 1.36940 * 120.00114 * 263.88406 * 17 16 14 20 20 H 1.07998 * 120.00152 * 142.20465 * 19 17 16 21 21 C 1.38810 * 120.00005 * 322.20619 * 19 17 16 22 22 N 1.31612 * 119.99978 * 165.15574 * 21 19 17 23 23 Si 1.86801 * 119.99919 * 345.15700 * 21 19 17 24 24 H 1.48502 * 109.47372 * 90.97119 * 23 21 19 25 25 H 1.48501 * 109.47237 * 210.97318 * 23 21 19 26 26 H 1.48504 * 109.47007 * 330.96960 * 23 21 19 27 27 C 1.50702 * 109.46724 * 272.73864 * 5 4 2 28 28 N 1.34779 * 119.99664 * 180.02562 * 27 5 4 29 29 O 1.21280 * 120.00251 * 0.02562 * 27 5 4 30 30 H 1.09002 * 109.47180 * 245.01427 * 1 2 3 31 31 H 1.09005 * 109.46926 * 5.01259 * 1 2 3 32 32 H 1.08995 * 109.46826 * 125.01110 * 1 2 3 33 33 H 0.97003 * 120.00420 * 355.56440 * 4 2 1 34 34 H 1.09001 * 109.47238 * 54.55964 * 7 5 4 35 35 H 1.09002 * 109.47342 * 174.56175 * 7 5 4 36 36 H 1.08994 * 110.36949 * 274.75141 * 11 10 8 37 37 H 1.08991 * 110.36707 * 37.07619 * 11 10 8 38 38 H 1.09001 * 111.19371 * 279.19338 * 12 11 10 39 39 H 1.09010 * 110.93653 * 155.29067 * 12 11 10 40 40 H 1.08998 * 110.71912 * 205.96716 * 13 12 11 41 41 H 1.09002 * 110.86652 * 82.76265 * 13 12 11 42 42 H 1.08998 * 109.46990 * 301.70258 * 16 14 10 43 43 H 1.09002 * 109.46799 * 61.70458 * 16 14 10 44 44 H 1.09007 * 109.46579 * 95.03609 * 18 17 16 45 45 H 1.08998 * 109.47147 * 215.03213 * 18 17 16 46 46 H 1.08995 * 109.47488 * 335.03657 * 18 17 16 47 47 H 0.97008 * 119.99909 * 179.97438 * 22 21 19 48 48 H 0.96996 * 119.99944 * 359.97438 * 28 27 5 49 49 H 0.97000 * 119.99964 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6426 -1.1692 -0.0975 6 1 4.0413 -0.2842 0.3984 7 6 4.1974 -2.4253 0.5772 8 6 3.9063 -2.3720 2.0549 9 8 3.2683 -1.4485 2.5143 10 7 4.3550 -3.3505 2.8658 11 6 5.2412 -4.4588 2.4661 12 6 5.9399 -4.8982 3.7796 13 6 4.7908 -4.7368 4.8098 14 6 4.0366 -3.4931 4.2941 15 1 4.3665 -2.6077 4.8375 16 6 2.5291 -3.6827 4.4747 17 7 2.2173 -3.7831 5.9025 18 6 2.0416 -2.5675 6.7012 19 6 2.0899 -5.0132 6.4907 20 1 2.4577 -5.1729 7.4935 21 6 1.4882 -6.0548 5.7981 22 7 1.6202 -7.2924 6.2258 23 14 0.4910 -5.6998 4.2589 24 1 1.3749 -5.7757 3.0679 25 1 -0.5975 -6.7019 4.1321 26 1 -0.0971 -4.3394 4.3529 27 6 4.0487 -1.1575 -1.5488 28 7 5.3543 -1.1577 -1.8832 29 8 3.2006 -1.1480 -2.4157 30 1 -0.3633 -0.4341 0.9315 31 1 -0.3633 1.0238 -0.0898 32 1 -0.3633 -0.5896 -0.8417 33 1 1.6980 -2.0060 0.0659 34 1 3.7255 -3.3081 0.1456 35 1 5.2749 -2.4761 0.4207 36 1 4.6576 -5.2804 2.0509 37 1 5.9788 -4.1125 1.7422 38 1 6.7755 -4.2411 4.0204 39 1 6.2668 -5.9363 3.7185 40 1 5.1902 -4.5591 5.8083 41 1 4.1403 -5.6114 4.8060 42 1 2.0019 -2.8301 4.0466 43 1 2.2146 -4.5957 3.9690 44 1 0.9820 -2.3174 6.7539 45 1 2.4258 -2.7352 7.7074 46 1 2.5863 -1.7456 6.2366 47 1 1.1993 -8.0203 5.7420 48 1 6.0325 -1.1650 -1.1898 49 1 5.6157 -1.1506 -2.8173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755210719.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:15 Heat of formation + Delta-G solvation = -76.705772 kcal Electronic energy + Delta-G solvation = -31848.643111 eV Core-core repulsion = 27618.814297 eV Total energy + Delta-G solvation = -4229.828814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.78217 -39.76482 -38.81428 -37.53943 -35.54975 -34.98090 -34.03985 -32.02073 -31.67885 -31.09726 -29.81714 -28.94442 -26.34557 -25.68374 -25.21616 -22.69936 -21.32768 -21.19978 -20.54671 -20.34959 -18.95733 -18.14572 -17.42327 -17.10266 -16.90951 -16.53938 -16.02401 -15.91560 -15.37591 -15.01551 -14.99127 -14.63091 -14.37710 -14.01238 -13.74119 -13.52960 -13.49684 -13.10825 -12.95395 -12.88841 -12.56315 -12.39193 -12.27071 -12.17645 -12.13471 -11.88935 -11.81138 -11.47243 -10.97929 -10.91790 -10.57054 -10.53416 -10.47889 -10.23806 -10.03792 -9.92273 -9.89032 -9.65963 -9.50789 -9.13086 -8.69049 -8.44196 -6.84199 -6.04078 -3.49486 2.26489 2.59922 2.65243 2.94665 3.04390 3.18596 3.39434 3.44526 3.45775 4.23378 4.32045 4.43534 4.68898 4.71710 4.74448 4.86219 4.98315 5.09015 5.12769 5.21015 5.25317 5.30637 5.39590 5.42086 5.49910 5.59485 5.78013 5.81564 5.90029 6.01614 6.21076 6.22236 6.28107 6.33514 6.41187 6.44073 6.52605 6.66499 6.74503 6.82565 6.94712 6.96062 7.42294 7.67705 7.91435 8.00087 8.22914 8.24561 8.31151 8.91871 9.64088 10.06384 11.11236 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.003917 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.097672 B = 7146.403343 C = 8012.001842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.529 3.471 3 O -0.550 6.550 4 N -0.700 5.700 5 C 0.145 3.855 6 H 0.126 0.874 7 C -0.146 4.146 8 C 0.522 3.478 9 O -0.524 6.524 10 N -0.611 5.611 11 C 0.097 3.903 12 C -0.137 4.137 13 C -0.108 4.108 14 C 0.120 3.880 15 H 0.067 0.933 16 C 0.128 3.872 17 N -0.610 5.610 18 C 0.126 3.874 19 C -0.261 4.261 20 H 0.082 0.918 21 C 0.033 3.967 22 N -0.906 5.906 23 Si 0.887 3.113 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.271 1.271 27 C 0.509 3.491 28 N -0.854 5.854 29 O -0.530 6.530 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.404 0.596 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.010 0.990 45 H 0.039 0.961 46 H 0.032 0.968 47 H 0.263 0.737 48 H 0.402 0.598 49 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.862 6.799 -13.917 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.317 3.683 3 O -0.427 6.427 4 N -0.351 5.351 5 C 0.035 3.965 6 H 0.144 0.856 7 C -0.186 4.186 8 C 0.309 3.691 9 O -0.400 6.400 10 N -0.346 5.346 11 C -0.026 4.026 12 C -0.175 4.175 13 C -0.146 4.146 14 C 0.015 3.985 15 H 0.085 0.915 16 C 0.001 3.999 17 N -0.334 5.334 18 C -0.019 4.019 19 C -0.390 4.390 20 H 0.099 0.901 21 C -0.167 4.167 22 N -0.549 5.549 23 Si 0.719 3.281 24 H -0.217 1.217 25 H -0.232 1.232 26 H -0.196 1.196 27 C 0.291 3.709 28 N -0.419 5.419 29 O -0.405 6.405 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.239 0.761 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.028 0.972 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.073 0.927 48 H 0.230 0.770 49 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 9.128 7.981 -14.119 18.611 hybrid contribution -0.195 -0.561 -0.961 1.129 sum 8.932 7.420 -15.080 19.033 Atomic orbital electron populations 1.21887 0.91465 1.05405 1.04491 1.20656 0.90621 0.83042 0.73981 1.90675 1.70834 1.31432 1.49735 1.45407 1.05050 1.09573 1.75094 1.20472 0.83703 1.00831 0.91507 0.85645 1.21971 1.03709 0.98893 0.94073 1.19830 0.80193 0.81685 0.87407 1.90774 1.39781 1.33008 1.76388 1.48747 1.48622 1.25868 1.11390 1.22408 0.92580 0.89657 0.97966 1.22865 0.98264 1.01696 0.94648 1.22559 0.95671 0.98495 0.97906 1.22515 0.98931 0.98453 0.78555 0.91459 1.21548 0.91721 0.99778 0.86839 1.43982 1.81602 1.03087 1.04731 1.21062 0.97584 0.88102 0.95147 1.18837 1.33206 0.85267 1.01675 0.90063 1.25440 0.97509 0.95446 0.98264 1.69783 1.45582 0.98416 1.41069 0.86861 0.80245 0.77730 0.83243 1.21689 1.23229 1.19636 1.21144 0.82769 0.75042 0.91931 1.43848 1.07429 1.78374 1.12209 1.90742 1.50426 1.48370 1.50982 0.88993 0.89004 0.89450 0.76108 0.87667 0.87367 0.91292 0.91177 0.91199 0.90075 0.90327 0.88682 0.93498 0.92383 0.97190 0.94225 0.94887 0.92709 0.76991 0.76659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.32 36.01 0.37 -1.52 16 2 C 0.53 7.85 7.87 -10.99 -0.09 7.76 16 3 O -0.55 -10.15 16.68 5.56 0.09 -10.06 16 4 N -0.70 -9.09 3.66 -54.93 -0.20 -9.29 16 5 C 0.15 1.66 2.01 -69.08 -0.14 1.53 16 6 H 0.13 1.64 7.29 -51.93 -0.38 1.27 16 7 C -0.15 -1.36 4.36 -27.88 -0.12 -1.48 16 8 C 0.52 7.35 7.45 -10.98 -0.08 7.27 16 9 O -0.52 -9.40 14.57 5.56 0.08 -9.32 16 10 N -0.61 -8.82 3.06 -162.88 -0.50 -9.32 16 11 C 0.10 1.07 6.65 -2.41 -0.02 1.05 16 12 C -0.14 -1.61 7.10 -24.46 -0.17 -1.79 16 13 C -0.11 -1.81 5.73 -24.89 -0.14 -1.96 16 14 C 0.12 2.13 3.10 -66.95 -0.21 1.92 16 15 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 16 C 0.13 2.74 3.58 -4.04 -0.01 2.73 16 17 N -0.61 -14.19 2.37 -181.11 -0.43 -14.62 16 18 C 0.13 2.58 10.72 59.85 0.64 3.23 16 19 C -0.26 -6.92 8.84 -15.06 -0.13 -7.05 16 20 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 21 C 0.03 0.91 5.27 -17.43 -0.09 0.82 16 22 N -0.91 -26.24 13.97 55.49 0.78 -25.46 16 23 Si 0.89 21.91 24.70 -169.99 -4.20 17.71 16 24 H -0.29 -6.75 6.59 56.52 0.37 -6.37 16 25 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 26 H -0.27 -6.83 7.08 56.52 0.40 -6.43 16 27 C 0.51 5.65 7.48 -10.98 -0.08 5.57 16 28 N -0.85 -5.48 8.73 31.22 0.27 -5.20 16 29 O -0.53 -8.04 17.23 5.56 0.10 -7.95 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 0.96 8.12 -51.93 -0.42 0.54 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.40 4.58 8.63 -40.82 -0.35 4.23 16 34 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.11 0.61 6.90 -51.93 -0.36 0.25 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.52 7.43 -51.93 -0.39 0.13 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.09 1.94 7.12 -51.93 -0.37 1.57 16 42 H 0.05 1.05 6.97 -51.93 -0.36 0.69 16 43 H 0.06 1.35 2.89 -51.93 -0.15 1.20 16 44 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 46 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.40 1.40 8.18 -40.82 -0.33 1.07 16 49 H 0.40 2.15 8.93 -40.82 -0.36 1.78 16 LS Contribution 394.44 15.07 5.94 5.94 Total: -1.00 -37.43 394.44 -6.05 -43.49 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.71 Total: 6.01 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: -0.28 Total: 18.08 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -0.08 Total: -63.91 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: 0.27 Total: -27.32 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.20 Total: 17.71 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.43 -6.05 -43.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755210719.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.220 kcal (2) G-P(sol) polarization free energy of solvation -37.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds