Wall clock time and date at job start Sat Apr 11 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21277 * 120.00222 * 2 1 4 4 N 1.34773 * 119.99778 * 180.02562 * 2 1 3 5 5 C 1.46505 * 120.00054 * 179.97438 * 4 2 1 6 6 C 1.50697 * 109.47141 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00347 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00207 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00317 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47264 * 180.02562 * 9 8 6 11 11 O 1.21286 * 119.99956 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00189 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99927 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.01855 * 326.39092 * 13 12 10 15 15 C 1.53879 * 110.03350 * 87.83153 * 13 12 10 16 16 C 1.54264 * 106.59704 * 119.28187 * 15 13 12 17 17 C 1.54879 * 104.19796 * 23.61244 * 16 15 13 18 18 H 1.09005 * 110.91660 * 80.44331 * 17 16 15 19 19 C 1.53004 * 110.75911 * 203.74149 * 17 16 15 20 20 N 1.46504 * 109.46932 * 288.33040 * 19 17 16 21 21 C 1.36934 * 119.99567 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00537 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99798 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00134 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00229 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47228 * 179.97438 * 25 23 21 27 27 H 1.48501 * 109.46793 * 299.99987 * 25 23 21 28 28 H 1.48500 * 109.47000 * 60.00079 * 25 23 21 29 29 C 1.54266 * 110.03088 * 204.99826 * 13 12 10 30 30 H 1.08998 * 109.47286 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46947 * 299.99893 * 1 2 3 32 32 H 1.09000 * 109.46762 * 59.99473 * 1 2 3 33 33 H 0.97000 * 120.00306 * 359.97438 * 4 2 1 34 34 H 1.08999 * 109.47091 * 59.99592 * 5 4 2 35 35 H 1.08999 * 109.46989 * 299.99321 * 5 4 2 36 36 H 0.97003 * 119.99466 * 0.02562 * 8 6 5 37 37 H 1.08999 * 109.47209 * 60.00078 * 9 8 6 38 38 H 1.09004 * 109.47444 * 300.00029 * 9 8 6 39 39 H 0.96998 * 119.99638 * 359.97438 * 12 10 9 40 40 H 1.08993 * 110.03542 * 238.56767 * 15 13 12 41 41 H 1.09003 * 110.02978 * 359.95329 * 15 13 12 42 42 H 1.09000 * 110.48918 * 264.93042 * 16 15 13 43 43 H 1.09003 * 110.48296 * 142.29398 * 16 15 13 44 44 H 1.08998 * 109.47524 * 168.32684 * 19 17 16 45 45 H 1.08997 * 109.47093 * 48.32585 * 19 17 16 46 46 H 0.97000 * 119.99825 * 359.97438 * 20 19 17 47 47 H 0.97005 * 119.99717 * 0.02562 * 24 23 21 48 48 H 1.08991 * 110.48717 * 98.43005 * 29 13 12 49 49 H 1.08997 * 110.59733 * 335.83422 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 6 4.1482 -2.5881 -0.0010 7 8 3.3600 -3.5099 0.0000 8 7 5.4732 -2.8345 -0.0019 9 6 5.9615 -4.2156 -0.0024 10 6 7.4685 -4.2157 -0.0029 11 8 8.0749 -3.1654 -0.0033 12 7 8.1424 -5.3830 -0.0038 13 6 9.6073 -5.3830 -0.0037 14 1 9.9805 -4.5295 -0.5698 15 6 10.1344 -5.3296 1.4410 16 6 10.9646 -6.6120 1.6549 17 6 11.3909 -7.0312 0.2262 18 1 12.2491 -6.4494 -0.1103 19 6 11.6981 -8.5290 0.1694 20 7 12.9535 -8.7971 0.8754 21 6 13.4331 -10.0771 0.9571 22 1 12.8858 -10.8891 0.5015 23 6 14.6229 -10.3311 1.6255 24 7 15.2903 -9.3416 2.1804 25 14 15.2769 -12.0773 1.7376 26 1 16.5532 -12.0801 2.4968 27 1 14.2840 -12.9339 2.4344 28 1 15.5138 -12.6059 0.3703 29 6 10.1358 -6.6960 -0.6173 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6959 -2.0072 -0.0005 34 1 4.0096 -0.6536 0.8888 35 1 4.0089 -0.6534 -0.8912 36 1 6.1036 -2.0972 -0.0024 37 1 5.5975 -4.7294 -0.8921 38 1 5.5988 -4.7296 0.8878 39 1 7.6573 -6.2229 -0.0039 40 1 10.7640 -4.4502 1.5766 41 1 9.3001 -5.3028 2.1420 42 1 10.3543 -7.3894 2.1145 43 1 11.8408 -6.4013 2.2681 44 1 11.7921 -8.8416 -0.8705 45 1 10.8889 -9.0841 0.6438 46 1 13.4449 -8.0679 1.2849 47 1 14.9505 -8.4348 2.1225 48 1 10.4072 -6.5466 -1.6623 49 1 9.3925 -7.4881 -0.5265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755736911.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:48 Heat of formation + Delta-G solvation = -111.019852 kcal Electronic energy + Delta-G solvation = -28146.228057 eV Core-core repulsion = 23914.911273 eV Total energy + Delta-G solvation = -4231.316784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.94270 -40.27189 -39.47730 -38.24469 -35.36365 -35.07745 -34.82381 -33.75420 -31.33364 -31.05966 -29.45970 -28.82678 -27.75460 -26.28729 -24.14395 -22.46022 -21.52720 -21.19442 -21.14045 -20.53890 -19.62637 -18.69653 -17.37372 -17.28016 -17.18917 -16.78935 -16.58193 -16.25723 -16.03722 -15.72392 -15.41128 -15.07880 -14.74001 -14.30497 -13.86201 -13.76443 -13.71934 -13.56295 -13.47615 -13.30016 -13.16784 -13.10571 -12.99780 -12.49551 -12.32668 -11.83508 -11.76737 -11.01997 -10.82174 -10.70782 -10.68679 -10.58709 -10.50726 -10.40754 -10.33592 -10.30961 -9.98388 -9.87925 -9.71209 -9.37938 -9.17005 -8.88720 -7.00803 -6.11406 -3.10785 1.88936 2.05675 2.10550 2.13159 2.71360 3.02262 3.50483 3.54066 3.71704 3.98380 4.18638 4.33742 4.52439 4.58495 4.65976 4.66774 4.69480 4.78547 4.79570 4.81012 4.88824 4.90037 5.28570 5.29724 5.41779 5.49154 5.49884 5.59177 5.62651 5.69468 5.71330 5.75149 5.89423 5.97973 6.03357 6.15551 6.26689 6.41418 6.42419 6.67634 6.78349 6.79512 6.92934 7.04985 7.46714 7.65431 7.72694 7.79317 8.75164 9.22787 10.09153 10.24314 11.37281 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.045336 B = 0.001326 C = 0.001311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.455793 B =21108.491982 C =21346.772546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.513 3.487 3 O -0.548 6.548 4 N -0.720 5.720 5 C 0.099 3.901 6 C 0.514 3.486 7 O -0.539 6.539 8 N -0.711 5.711 9 C 0.099 3.901 10 C 0.507 3.493 11 O -0.538 6.538 12 N -0.714 5.714 13 C 0.141 3.859 14 H 0.092 0.908 15 C -0.133 4.133 16 C -0.112 4.112 17 C -0.098 4.098 18 H 0.078 0.922 19 C 0.167 3.833 20 N -0.743 5.743 21 C -0.333 4.333 22 H 0.063 0.937 23 C -0.045 4.045 24 N -0.944 5.944 25 Si 1.080 2.920 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.295 1.295 29 C -0.121 4.121 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.413 0.587 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.416 0.584 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.404 0.596 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.018 0.982 45 H 0.019 0.981 46 H 0.367 0.633 47 H 0.254 0.746 48 H 0.072 0.928 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.659 15.561 -5.736 33.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.301 3.699 3 O -0.425 6.425 4 N -0.377 5.377 5 C -0.028 4.028 6 C 0.299 3.701 7 O -0.416 6.416 8 N -0.367 5.367 9 C -0.028 4.028 10 C 0.293 3.707 11 O -0.415 6.415 12 N -0.366 5.366 13 C 0.037 3.963 14 H 0.110 0.890 15 C -0.172 4.172 16 C -0.150 4.150 17 C -0.117 4.117 18 H 0.096 0.904 19 C 0.040 3.960 20 N -0.388 5.388 21 C -0.464 4.464 22 H 0.081 0.919 23 C -0.243 4.243 24 N -0.590 5.590 25 Si 0.910 3.090 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.223 1.223 29 C -0.159 4.159 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.251 0.749 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.255 0.745 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.239 0.761 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.036 0.964 45 H 0.037 0.963 46 H 0.200 0.800 47 H 0.066 0.934 48 H 0.091 0.909 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.205 15.258 -5.255 31.631 hybrid contribution -1.209 0.539 -0.487 1.411 sum -28.414 15.797 -5.742 33.013 Atomic orbital electron populations 1.21835 0.90935 1.04571 1.05563 1.20877 0.90855 0.82947 0.75270 1.90751 1.70730 1.31393 1.49659 1.45880 1.05785 1.10108 1.75879 1.21027 0.82687 0.93713 1.05414 1.20495 0.82253 0.91352 0.75954 1.90720 1.55145 1.45889 1.49844 1.45572 1.07239 1.08839 1.75049 1.21114 0.91468 0.84996 1.05263 1.20445 0.89489 0.84493 0.76314 1.90723 1.69822 1.31148 1.49793 1.46145 1.07880 1.08205 1.74322 1.21781 0.77777 0.99588 0.97176 0.88951 1.22584 0.99893 0.99206 0.95486 1.22353 0.99541 0.95991 0.97121 1.22295 0.96522 0.98198 0.94663 0.90370 1.20565 0.89326 0.90878 0.95253 1.42346 1.23546 1.06858 1.66092 1.20034 1.07186 0.85521 1.33612 0.91853 1.25770 0.94403 1.06199 0.97897 1.70889 1.40918 1.00011 1.47148 0.83247 0.76153 0.73705 0.75850 1.21006 1.22288 1.22279 1.22624 0.98163 0.95465 0.99675 0.90295 0.88452 0.88465 0.74882 0.87933 0.87941 0.74504 0.87971 0.87960 0.76132 0.91241 0.91689 0.91420 0.91258 0.96399 0.96287 0.79998 0.93433 0.90878 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 10.39 36.01 0.37 -0.19 16 2 C 0.51 3.69 7.94 -10.99 -0.09 3.60 16 3 O -0.55 -6.28 17.10 5.56 0.10 -6.18 16 4 N -0.72 -4.41 5.53 -61.47 -0.34 -4.75 16 5 C 0.10 0.59 6.15 -5.19 -0.03 0.56 16 6 C 0.51 3.65 7.90 -10.99 -0.09 3.56 16 7 O -0.54 -5.18 15.67 5.56 0.09 -5.09 16 8 N -0.71 -4.68 5.53 -61.48 -0.34 -5.02 16 9 C 0.10 0.63 6.15 -5.20 -0.03 0.59 16 10 C 0.51 4.38 7.90 -10.98 -0.09 4.29 16 11 O -0.54 -6.45 15.32 5.55 0.09 -6.37 16 12 N -0.71 -5.66 4.98 -52.72 -0.26 -5.92 16 13 C 0.14 1.45 3.25 -66.81 -0.22 1.24 16 14 H 0.09 1.06 7.56 -51.93 -0.39 0.67 16 15 C -0.13 -1.54 6.59 -25.61 -0.17 -1.71 16 16 C -0.11 -1.58 6.20 -25.08 -0.16 -1.73 16 17 C -0.10 -1.44 2.91 -88.63 -0.26 -1.70 16 18 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 19 C 0.17 3.23 5.70 -4.04 -0.02 3.21 16 20 N -0.74 -18.47 5.52 -59.91 -0.33 -18.80 16 21 C -0.33 -9.38 9.99 -15.06 -0.15 -9.53 16 22 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.05 -1.31 5.50 -17.43 -0.10 -1.41 16 24 N -0.94 -29.16 13.70 55.49 0.76 -28.40 16 25 Si 1.08 25.81 29.92 -169.99 -5.09 20.72 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 29 C -0.12 -1.32 5.97 -25.07 -0.15 -1.47 16 30 H 0.08 0.11 7.91 -51.93 -0.41 -0.30 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.41 2.15 7.27 -40.82 -0.30 1.86 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.42 2.63 7.44 -40.82 -0.30 2.33 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.40 2.22 8.36 -40.82 -0.34 1.88 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16 42 H 0.07 0.98 7.93 -51.93 -0.41 0.57 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.02 0.38 7.99 -51.93 -0.41 -0.04 16 46 H 0.37 9.32 6.50 -40.82 -0.27 9.05 16 47 H 0.25 7.72 6.77 -40.82 -0.28 7.45 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.07 0.73 7.65 -51.93 -0.40 0.33 16 LS Contribution 407.82 15.07 6.15 6.15 Total: -1.00 -37.53 407.82 -8.13 -45.67 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.78 Total: 8.67 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.17 Total: -0.68 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.51 Total: -62.89 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.27 Total: -17.64 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.09 Total: 20.72 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.53 -8.13 -45.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755736911.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.352 kcal (2) G-P(sol) polarization free energy of solvation -37.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds