Wall clock time and date at job start Sat Apr 11 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21277 * 120.00222 * 2 1 4 4 N 1.34773 * 119.99778 * 180.02562 * 2 1 3 5 5 C 1.46505 * 120.00054 * 179.97438 * 4 2 1 6 6 C 1.50697 * 109.47141 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00347 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00207 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00317 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47264 * 180.02562 * 9 8 6 11 11 O 1.21286 * 119.99956 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00189 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99927 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.01855 * 326.39092 * 13 12 10 15 15 C 1.53879 * 110.03350 * 87.83153 * 13 12 10 16 16 C 1.54264 * 106.59704 * 119.28187 * 15 13 12 17 17 C 1.54879 * 104.19796 * 23.61244 * 16 15 13 18 18 H 1.09005 * 110.91660 * 80.44331 * 17 16 15 19 19 C 1.53004 * 110.75911 * 203.74149 * 17 16 15 20 20 N 1.46504 * 109.46932 * 288.33040 * 19 17 16 21 21 C 1.36934 * 119.99567 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00537 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99798 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00134 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00229 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47228 * 179.97438 * 25 23 21 27 27 H 1.48501 * 109.46793 * 299.99987 * 25 23 21 28 28 H 1.48500 * 109.47000 * 60.00079 * 25 23 21 29 29 C 1.54266 * 110.03088 * 204.99826 * 13 12 10 30 30 H 1.08998 * 109.47286 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46947 * 299.99893 * 1 2 3 32 32 H 1.09000 * 109.46762 * 59.99473 * 1 2 3 33 33 H 0.97000 * 120.00306 * 359.97438 * 4 2 1 34 34 H 1.08999 * 109.47091 * 59.99592 * 5 4 2 35 35 H 1.08999 * 109.46989 * 299.99321 * 5 4 2 36 36 H 0.97003 * 119.99466 * 0.02562 * 8 6 5 37 37 H 1.08999 * 109.47209 * 60.00078 * 9 8 6 38 38 H 1.09004 * 109.47444 * 300.00029 * 9 8 6 39 39 H 0.96998 * 119.99638 * 359.97438 * 12 10 9 40 40 H 1.08993 * 110.03542 * 238.56767 * 15 13 12 41 41 H 1.09003 * 110.02978 * 359.95329 * 15 13 12 42 42 H 1.09000 * 110.48918 * 264.93042 * 16 15 13 43 43 H 1.09003 * 110.48296 * 142.29398 * 16 15 13 44 44 H 1.08998 * 109.47524 * 168.32684 * 19 17 16 45 45 H 1.08997 * 109.47093 * 48.32585 * 19 17 16 46 46 H 0.97000 * 119.99825 * 359.97438 * 20 19 17 47 47 H 0.97005 * 119.99717 * 0.02562 * 24 23 21 48 48 H 1.08991 * 110.48717 * 98.43005 * 29 13 12 49 49 H 1.08997 * 110.59733 * 335.83422 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 6 4.1482 -2.5881 -0.0010 7 8 3.3600 -3.5099 0.0000 8 7 5.4732 -2.8345 -0.0019 9 6 5.9615 -4.2156 -0.0024 10 6 7.4685 -4.2157 -0.0029 11 8 8.0749 -3.1654 -0.0033 12 7 8.1424 -5.3830 -0.0038 13 6 9.6073 -5.3830 -0.0037 14 1 9.9805 -4.5295 -0.5698 15 6 10.1344 -5.3296 1.4410 16 6 10.9646 -6.6120 1.6549 17 6 11.3909 -7.0312 0.2262 18 1 12.2491 -6.4494 -0.1103 19 6 11.6981 -8.5290 0.1694 20 7 12.9535 -8.7971 0.8754 21 6 13.4331 -10.0771 0.9571 22 1 12.8858 -10.8891 0.5015 23 6 14.6229 -10.3311 1.6255 24 7 15.2903 -9.3416 2.1804 25 14 15.2769 -12.0773 1.7376 26 1 16.5532 -12.0801 2.4968 27 1 14.2840 -12.9339 2.4344 28 1 15.5138 -12.6059 0.3703 29 6 10.1358 -6.6960 -0.6173 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6959 -2.0072 -0.0005 34 1 4.0096 -0.6536 0.8888 35 1 4.0089 -0.6534 -0.8912 36 1 6.1036 -2.0972 -0.0024 37 1 5.5975 -4.7294 -0.8921 38 1 5.5988 -4.7296 0.8878 39 1 7.6573 -6.2229 -0.0039 40 1 10.7640 -4.4502 1.5766 41 1 9.3001 -5.3028 2.1420 42 1 10.3543 -7.3894 2.1145 43 1 11.8408 -6.4013 2.2681 44 1 11.7921 -8.8416 -0.8705 45 1 10.8889 -9.0841 0.6438 46 1 13.4449 -8.0679 1.2849 47 1 14.9505 -8.4348 2.1225 48 1 10.4072 -6.5466 -1.6623 49 1 9.3925 -7.4881 -0.5265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755736911.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:48 Heat of formation + Delta-G solvation = -141.769102 kcal Electronic energy + Delta-G solvation = -28147.561445 eV Core-core repulsion = 23914.911273 eV Total energy + Delta-G solvation = -4232.650172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.57816 -40.96973 -40.13123 -39.26853 -36.81052 -35.81577 -35.44560 -34.97322 -32.94019 -31.61210 -30.20345 -30.03745 -28.68486 -27.00152 -25.85453 -24.20253 -22.26891 -21.77285 -21.67537 -21.50025 -20.75459 -19.39082 -19.20406 -18.00224 -17.86022 -17.47739 -17.26595 -16.96062 -16.76595 -16.63909 -16.43639 -15.95149 -15.75980 -15.66543 -15.07404 -15.01058 -14.87113 -14.53020 -14.27421 -14.24723 -14.05028 -13.64275 -13.53225 -13.30524 -12.97102 -12.92868 -12.79687 -12.67287 -12.57883 -12.08978 -11.88066 -11.81273 -11.71095 -11.54341 -11.31168 -11.21049 -11.13629 -11.06948 -10.90475 -10.44377 -10.26508 -10.13924 -9.09682 -8.40063 -5.33364 1.33089 1.44804 1.50508 1.57602 1.58669 1.68663 1.85107 2.13315 2.49034 2.72000 3.39505 3.41935 3.49475 3.51470 3.65456 3.83112 3.93866 4.00000 4.20823 4.30582 4.32613 4.33168 4.34529 4.42807 4.46413 4.51400 4.52079 4.57638 4.67299 4.68117 4.84954 4.94036 5.02621 5.05238 5.07920 5.09927 5.13792 5.24350 5.28425 5.43412 5.51694 5.58932 6.24498 6.41020 6.45392 6.49494 6.91760 7.08281 7.10477 7.14797 8.01520 8.12232 9.12143 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.045336 B = 0.001326 C = 0.001311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.455793 B =21108.491982 C =21346.772546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.508 3.492 3 O -0.597 6.597 4 N -0.714 5.714 5 C 0.098 3.902 6 C 0.521 3.479 7 O -0.563 6.563 8 N -0.709 5.709 9 C 0.104 3.896 10 C 0.511 3.489 11 O -0.573 6.573 12 N -0.704 5.704 13 C 0.151 3.849 14 H 0.084 0.916 15 C -0.124 4.124 16 C -0.108 4.108 17 C -0.093 4.093 18 H 0.066 0.934 19 C 0.165 3.835 20 N -0.757 5.757 21 C -0.337 4.337 22 H 0.067 0.933 23 C -0.104 4.104 24 N -0.976 5.976 25 Si 1.128 2.872 26 H -0.293 1.293 27 H -0.277 1.277 28 H -0.277 1.277 29 C -0.107 4.107 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.419 0.581 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.418 0.582 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.419 0.581 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.018 0.982 45 H 0.023 0.977 46 H 0.360 0.640 47 H 0.243 0.757 48 H 0.083 0.917 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.950 14.678 -6.530 34.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.298 3.702 3 O -0.478 6.478 4 N -0.370 5.370 5 C -0.030 4.030 6 C 0.307 3.693 7 O -0.442 6.442 8 N -0.364 5.364 9 C -0.023 4.023 10 C 0.297 3.703 11 O -0.452 6.452 12 N -0.356 5.356 13 C 0.046 3.954 14 H 0.102 0.898 15 C -0.163 4.163 16 C -0.146 4.146 17 C -0.113 4.113 18 H 0.084 0.916 19 C 0.039 3.961 20 N -0.402 5.402 21 C -0.468 4.468 22 H 0.085 0.915 23 C -0.296 4.296 24 N -0.624 5.624 25 Si 0.952 3.048 26 H -0.220 1.220 27 H -0.203 1.203 28 H -0.203 1.203 29 C -0.145 4.145 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.258 0.742 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.257 0.743 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.256 0.744 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.041 0.959 46 H 0.192 0.808 47 H 0.054 0.946 48 H 0.102 0.898 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -29.562 14.336 -6.080 33.412 hybrid contribution -0.524 0.809 -0.260 0.998 sum -30.086 15.145 -6.340 34.274 Atomic orbital electron populations 1.21881 0.87862 1.06362 1.06231 1.21581 0.92357 0.82258 0.74016 1.90726 1.71976 1.33010 1.52137 1.45917 1.05898 1.10215 1.75001 1.21068 0.82834 0.93151 1.05899 1.20539 0.82093 0.91335 0.75312 1.90710 1.55684 1.46598 1.51213 1.45590 1.07132 1.09169 1.74534 1.21163 0.89492 0.85044 1.06613 1.20781 0.90331 0.83896 0.75256 1.90720 1.70699 1.32421 1.51379 1.45971 1.06837 1.08960 1.73835 1.21484 0.79216 0.98877 0.95851 0.89801 1.22490 0.99627 0.97403 0.96738 1.22265 0.98922 0.97176 0.96273 1.22169 0.98105 0.94860 0.96129 0.91557 1.20752 0.87034 0.94046 0.94258 1.42594 1.25266 1.05719 1.66588 1.20425 1.07032 0.86958 1.32383 0.91524 1.27217 0.95245 1.09141 0.97948 1.71000 1.41980 1.00047 1.49371 0.82637 0.75506 0.69941 0.76717 1.21958 1.20269 1.20333 1.22518 0.96455 0.96169 0.99403 0.87965 0.87738 0.87700 0.74186 0.87531 0.87422 0.74303 0.86394 0.86681 0.74354 0.91866 0.90857 0.91752 0.93666 0.96417 0.95906 0.80829 0.94644 0.89793 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 10.39 71.24 0.74 -0.07 16 2 C 0.51 6.95 7.94 87.66 0.70 7.64 16 3 O -0.60 -13.78 17.10 -3.02 -0.05 -13.83 16 4 N -0.71 -8.01 5.53 -466.79 -2.58 -10.59 16 5 C 0.10 1.09 6.15 85.63 0.53 1.62 16 6 C 0.52 6.65 7.90 87.66 0.69 7.34 16 7 O -0.56 -9.85 15.67 -3.03 -0.05 -9.90 16 8 N -0.71 -8.17 5.53 -466.80 -2.58 -10.75 16 9 C 0.10 1.06 6.15 85.63 0.53 1.59 16 10 C 0.51 7.73 7.90 87.66 0.69 8.42 16 11 O -0.57 -12.99 15.32 -3.05 -0.05 -13.04 16 12 N -0.70 -9.31 4.98 -439.09 -2.19 -11.50 16 13 C 0.15 2.83 3.25 45.72 0.15 2.98 16 14 H 0.08 1.80 7.56 -2.39 -0.02 1.79 16 15 C -0.12 -2.75 6.59 31.32 0.21 -2.54 16 16 C -0.11 -3.03 6.20 31.66 0.20 -2.83 16 17 C -0.09 -2.70 2.91 -9.50 -0.03 -2.72 16 18 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 19 C 0.17 6.29 5.70 86.38 0.49 6.79 16 20 N -0.76 -38.08 5.52 -343.44 -1.90 -39.97 16 21 C -0.34 -19.00 9.99 84.03 0.84 -18.16 16 22 H 0.07 3.65 7.83 -2.91 -0.02 3.62 16 23 C -0.10 -6.08 5.50 84.86 0.47 -5.61 16 24 N -0.98 -61.39 13.70 21.65 0.30 -61.10 16 25 Si 1.13 51.67 29.92 68.60 2.05 53.72 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 28 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 29 C -0.11 -2.09 5.97 31.67 0.19 -1.90 16 30 H 0.10 0.02 7.91 -2.39 -0.02 0.00 16 31 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.42 3.76 7.27 -92.71 -0.67 3.09 16 34 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.42 4.80 7.44 -92.71 -0.69 4.11 16 37 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.42 3.18 8.36 -92.71 -0.78 2.41 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 1.52 7.92 -2.39 -0.02 1.50 16 42 H 0.06 1.83 7.93 -2.39 -0.02 1.81 16 43 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.02 0.87 7.99 -2.39 -0.02 0.85 16 46 H 0.36 18.86 6.50 -92.71 -0.60 18.26 16 47 H 0.24 15.26 6.77 -92.70 -0.63 14.63 16 48 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.09 1.51 7.65 -2.39 -0.02 1.49 16 Total: -1.00 -81.86 407.82 -2.25 -84.11 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: -1.60 Total: 30.31 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 6.39 Total: 2.53 kcal Atomic # 7 Polarization: -124.96 SS G_CDS: -8.95 Total: -133.91 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.15 Total: -36.77 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.05 Total: 53.72 kcal Total: -81.86 -2.25 -84.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755736911.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.656 kcal (2) G-P(sol) polarization free energy of solvation -81.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds