Wall clock time and date at job start Sat Apr 11 2020 06:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21277 * 119.99810 * 2 1 4 4 N 1.34774 * 119.99936 * 179.97438 * 2 1 3 5 5 C 1.46494 * 120.00140 * 180.02562 * 4 2 1 6 6 C 1.50699 * 109.47293 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99956 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00001 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00340 * 180.02562 * 8 6 5 10 10 C 1.50693 * 109.47748 * 179.97438 * 9 8 6 11 11 O 1.21290 * 119.99756 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00561 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00140 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.43709 * 325.70235 * 13 12 10 15 15 C 1.54892 * 110.59868 * 88.32010 * 13 12 10 16 16 C 1.54888 * 102.74611 * 156.67242 * 15 13 12 17 17 C 1.54265 * 104.19721 * 322.05788 * 16 15 13 18 18 H 1.08997 * 110.07567 * 264.30049 * 17 16 15 19 19 C 1.53010 * 110.02884 * 142.89561 * 17 16 15 20 20 N 1.46495 * 109.47237 * 67.83345 * 19 17 16 21 21 C 1.36935 * 120.00144 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00025 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00338 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99760 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00259 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46915 * 60.00218 * 25 23 21 27 27 H 1.48496 * 109.47284 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47271 * 300.00544 * 25 23 21 29 29 C 1.53873 * 106.59997 * 23.61451 * 17 16 15 30 30 H 1.08995 * 109.47295 * 239.99998 * 1 2 3 31 31 H 1.09011 * 109.47083 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47452 * 119.99843 * 1 2 3 33 33 H 0.97001 * 119.99944 * 359.97438 * 4 2 1 34 34 H 1.09005 * 109.47154 * 59.99791 * 5 4 2 35 35 H 1.09004 * 109.47014 * 300.00125 * 5 4 2 36 36 H 0.97007 * 120.00134 * 359.97438 * 8 6 5 37 37 H 1.08999 * 109.46724 * 59.99435 * 9 8 6 38 38 H 1.09004 * 109.47016 * 300.00141 * 9 8 6 39 39 H 0.97001 * 119.99638 * 0.02562 * 12 10 9 40 40 H 1.08992 * 110.75663 * 274.99104 * 15 13 12 41 41 H 1.09000 * 110.75339 * 38.36128 * 15 13 12 42 42 H 1.09007 * 110.48520 * 203.37936 * 16 15 13 43 43 H 1.08998 * 110.59686 * 80.79466 * 16 15 13 44 44 H 1.08997 * 109.46752 * 187.83501 * 19 17 16 45 45 H 1.09004 * 109.46715 * 307.83387 * 19 17 16 46 46 H 0.97001 * 119.99840 * 0.02562 * 20 19 17 47 47 H 0.97000 * 120.00053 * 179.97438 * 24 23 21 48 48 H 1.09002 * 110.03017 * 240.71676 * 29 17 16 49 49 H 1.08992 * 110.03600 * 119.28231 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0011 6 6 4.1482 -2.5880 0.0022 7 8 3.3601 -3.5098 0.0030 8 7 5.4732 -2.8343 0.0024 9 6 5.9616 -4.2155 0.0029 10 6 7.4685 -4.2156 0.0024 11 8 8.0750 -3.1652 0.0021 12 7 8.1425 -5.3828 0.0033 13 6 9.6075 -5.3828 0.0033 14 1 9.9881 -4.5394 -0.5729 15 6 10.1524 -5.3392 1.4525 16 6 11.5712 -5.9421 1.3024 17 6 11.3959 -7.0675 0.2620 18 1 11.2507 -8.0233 0.7654 19 6 12.6242 -7.1361 -0.6478 20 7 13.7811 -7.5910 0.1272 21 6 15.0004 -7.7303 -0.4803 22 1 15.1092 -7.5044 -1.5309 23 6 16.0967 -8.1608 0.2541 24 7 15.9643 -8.4357 1.5345 25 14 17.7598 -8.3515 -0.5749 26 1 18.1902 -7.0422 -1.1279 27 1 18.7578 -8.8204 0.4197 28 1 17.6535 -9.3428 -1.6755 29 6 10.1474 -6.7118 -0.5641 30 1 -0.3633 -0.5138 0.8899 31 1 -0.3634 1.0278 -0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 1.6959 -2.0072 0.0013 34 1 4.0089 -0.6532 0.8911 35 1 4.0095 -0.6536 -0.8889 36 1 6.1036 -2.0970 0.0014 37 1 5.5982 -4.7297 -0.8868 38 1 5.5982 -4.7290 0.8931 39 1 7.6575 -6.2228 0.0039 40 1 10.2053 -4.3125 1.8146 41 1 9.5401 -5.9521 2.1140 42 1 11.9143 -6.3513 2.2528 43 1 12.2707 -5.1903 0.9371 44 1 12.4346 -7.8354 -1.4621 45 1 12.8280 -6.1470 -1.0582 46 1 13.6833 -7.7943 1.0706 47 1 16.7303 -8.7369 2.0477 48 1 9.3958 -7.4945 -0.4608 49 1 10.4164 -6.5881 -1.6131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755736913.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:57 Heat of formation + Delta-G solvation = -112.053498 kcal Electronic energy + Delta-G solvation = -28112.268920 eV Core-core repulsion = 23880.907313 eV Total energy + Delta-G solvation = -4231.361606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90852 -40.21619 -39.44677 -38.20344 -35.29727 -34.96604 -34.77635 -33.56517 -31.28569 -31.03777 -29.45186 -28.85325 -27.75453 -26.28245 -24.34430 -22.20311 -21.43599 -21.14521 -21.10723 -20.63562 -19.56468 -18.67210 -17.35351 -17.22918 -17.02516 -16.73063 -16.59853 -16.23113 -15.96683 -15.61157 -15.16983 -14.94989 -14.54924 -14.33016 -13.99899 -13.79688 -13.66896 -13.49029 -13.35695 -13.27909 -13.06732 -12.96045 -12.78109 -12.51178 -12.26435 -11.80286 -11.50218 -11.11312 -10.85856 -10.76412 -10.70244 -10.66970 -10.49100 -10.38358 -10.30789 -10.20467 -9.94976 -9.85805 -9.69271 -9.67460 -9.28333 -8.86123 -6.91290 -5.76323 -3.04631 1.90796 2.07944 2.12274 2.17306 2.73706 3.04794 3.44134 3.48523 3.49514 4.00745 4.22180 4.34111 4.56396 4.62746 4.68268 4.73505 4.73760 4.80839 4.81106 4.83958 4.87812 4.97454 5.32120 5.44406 5.49189 5.50496 5.55940 5.59426 5.65113 5.73234 5.80356 5.83614 6.01968 6.08671 6.22956 6.24453 6.37076 6.50716 6.60310 6.78416 6.80634 6.90880 6.94287 7.09712 7.48689 7.67137 7.69601 7.77389 8.42949 9.54043 10.12609 10.47250 11.46574 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.044640 B = 0.001324 C = 0.001313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.093100 B =21137.802431 C =21312.065735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.547 6.547 4 N -0.721 5.721 5 C 0.099 3.901 6 C 0.514 3.486 7 O -0.540 6.540 8 N -0.711 5.711 9 C 0.099 3.901 10 C 0.507 3.493 11 O -0.536 6.536 12 N -0.714 5.714 13 C 0.138 3.862 14 H 0.096 0.904 15 C -0.133 4.133 16 C -0.111 4.111 17 C -0.096 4.096 18 H 0.075 0.925 19 C 0.159 3.841 20 N -0.732 5.732 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.121 4.121 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.413 0.587 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.417 0.583 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.402 0.598 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.017 0.983 45 H 0.019 0.981 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.067 0.933 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.772 10.814 -2.151 33.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.424 6.424 4 N -0.378 5.378 5 C -0.028 4.028 6 C 0.300 3.700 7 O -0.417 6.417 8 N -0.367 5.367 9 C -0.028 4.028 10 C 0.292 3.708 11 O -0.413 6.413 12 N -0.365 5.365 13 C 0.035 3.965 14 H 0.114 0.886 15 C -0.172 4.172 16 C -0.149 4.149 17 C -0.115 4.115 18 H 0.093 0.907 19 C 0.031 3.969 20 N -0.376 5.376 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.159 4.159 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.251 0.749 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.255 0.745 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.237 0.763 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.034 0.966 45 H 0.037 0.963 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.086 0.914 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -31.297 11.650 -2.282 33.473 hybrid contribution 0.915 -0.856 -0.099 1.257 sum -30.382 10.794 -2.381 32.330 Atomic orbital electron populations 1.21905 0.90926 1.05779 1.04608 1.20874 0.90862 0.82936 0.75309 1.90752 1.70858 1.31392 1.49364 1.45786 1.05777 1.10112 1.76106 1.21025 0.82619 0.93730 1.05428 1.20488 0.82256 0.91341 0.75942 1.90715 1.55154 1.45899 1.49922 1.45579 1.07237 1.08878 1.74983 1.21111 0.91534 0.84979 1.05189 1.20429 0.89439 0.84523 0.76384 1.90734 1.69792 1.31127 1.49640 1.46045 1.07935 1.08121 1.74392 1.22031 0.77391 0.99559 0.97556 0.88563 1.22889 0.97364 1.01256 0.95659 1.22321 0.95226 0.97802 0.99543 1.21889 0.94254 0.99080 0.96310 0.90694 1.20796 0.86323 0.96674 0.93080 1.42337 1.04853 1.80456 1.09939 1.19195 0.86497 1.37483 0.93981 0.91313 1.24724 0.98052 1.02347 0.95812 1.69648 1.30180 1.52123 1.06340 0.86274 0.84002 0.77821 0.78130 1.21285 1.21682 1.21301 1.22408 0.97710 0.95260 1.00570 0.89125 0.88691 0.89134 0.74905 0.87937 0.87934 0.74465 0.88023 0.88000 0.76270 0.91415 0.91502 0.91150 0.90802 0.96564 0.96276 0.78264 0.93500 0.91438 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 10.32 36.01 0.37 -0.20 16 2 C 0.51 3.71 7.94 -10.98 -0.09 3.62 16 3 O -0.55 -6.32 17.09 5.56 0.09 -6.22 16 4 N -0.72 -4.40 5.53 -61.47 -0.34 -4.74 16 5 C 0.10 0.60 6.15 -5.20 -0.03 0.57 16 6 C 0.51 3.64 7.90 -10.99 -0.09 3.56 16 7 O -0.54 -5.13 15.67 5.56 0.09 -5.04 16 8 N -0.71 -4.70 5.53 -61.48 -0.34 -5.04 16 9 C 0.10 0.62 6.15 -5.20 -0.03 0.59 16 10 C 0.51 4.42 7.90 -10.99 -0.09 4.33 16 11 O -0.54 -6.61 15.35 5.55 0.09 -6.52 16 12 N -0.71 -5.60 5.17 -52.20 -0.27 -5.88 16 13 C 0.14 1.48 3.18 -66.27 -0.21 1.27 16 14 H 0.10 1.20 7.61 -51.93 -0.40 0.81 16 15 C -0.13 -1.56 6.58 -24.74 -0.16 -1.73 16 16 C -0.11 -1.62 6.08 -25.07 -0.15 -1.77 16 17 C -0.10 -1.42 2.96 -89.50 -0.27 -1.69 16 18 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 19 C 0.16 3.08 5.31 -4.04 -0.02 3.06 16 20 N -0.73 -18.25 5.45 -59.91 -0.33 -18.57 16 21 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 22 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 25 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 C -0.12 -1.33 6.19 -25.61 -0.16 -1.49 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.33 8.12 -51.92 -0.42 -0.09 16 32 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.41 2.12 7.44 -40.82 -0.30 1.82 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.42 2.69 7.44 -40.82 -0.30 2.39 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.40 2.03 8.35 -40.82 -0.34 1.69 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 43 H 0.07 1.21 7.76 -51.93 -0.40 0.81 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.38 8.00 -51.93 -0.42 -0.03 16 46 H 0.38 10.02 7.55 -40.82 -0.31 9.71 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 48 H 0.07 0.60 7.72 -51.93 -0.40 0.20 16 49 H 0.07 0.84 7.67 -51.93 -0.40 0.44 16 LS Contribution 409.23 15.07 6.17 6.17 Total: -1.00 -36.53 409.23 -8.20 -44.73 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -7.89 Total: 8.40 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.17 Total: 2.77 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: -0.55 Total: -61.63 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.27 Total: -17.78 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.53 -8.20 -44.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755736913.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.322 kcal (2) G-P(sol) polarization free energy of solvation -36.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds